Wall clock time and date at job start Tue Mar 31 2020 19:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99576 * 2 1 4 4 O 1.42901 * 112.91361 * 291.47225 * 3 2 1 5 5 C 1.42895 * 113.99941 * 310.83330 * 4 3 2 6 6 C 1.53776 * 113.61288 * 62.72916 * 3 2 1 7 7 C 1.53781 * 87.08474 * 89.11202 * 6 3 2 8 8 C 1.53002 * 113.61652 * 139.98440 * 7 6 3 9 9 N 1.46498 * 109.47177 * 175.00134 * 8 7 6 10 10 C 1.34778 * 119.99894 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00080 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99725 * 179.97438 * 10 9 8 13 13 C 1.50704 * 109.46827 * 180.02562 * 12 10 9 14 14 C 1.37644 * 120.12723 * 265.30891 * 13 12 10 15 15 C 1.38612 * 120.24345 * 180.32566 * 14 13 12 16 16 C 1.38660 * 120.50314 * 359.66474 * 15 14 13 17 17 C 1.37591 * 120.24936 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.12501 * 85.00372 * 13 12 10 19 19 C 1.41396 * 120.24514 * 359.97438 * 18 13 12 20 20 H 1.07994 * 119.99622 * 333.98522 * 19 18 13 21 21 C 1.39949 * 119.99740 * 153.98218 * 19 18 13 22 22 N 1.30814 * 120.00065 * 334.38256 * 21 19 18 23 23 Si 1.86797 * 119.99449 * 154.38499 * 21 19 18 24 24 H 1.48506 * 109.46855 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47164 * 299.99505 * 23 21 19 26 26 H 1.48494 * 109.47234 * 60.00218 * 23 21 19 27 27 C 1.53777 * 87.08091 * 25.43174 * 7 6 3 28 28 H 1.09000 * 109.47444 * 64.33219 * 1 2 3 29 29 H 1.09008 * 109.46606 * 184.32940 * 1 2 3 30 30 H 1.08994 * 109.47092 * 304.32521 * 1 2 3 31 31 H 1.09000 * 109.47267 * 185.14342 * 5 4 3 32 32 H 1.09005 * 109.47197 * 305.14790 * 5 4 3 33 33 H 1.08995 * 109.47553 * 65.14392 * 5 4 3 34 34 H 1.09000 * 113.61600 * 334.56468 * 6 3 2 35 35 H 1.08997 * 113.61928 * 203.66131 * 6 3 2 36 36 H 1.09005 * 113.61065 * 270.80046 * 7 6 3 37 37 H 1.08993 * 109.46972 * 54.99587 * 8 7 6 38 38 H 1.09002 * 109.46745 * 294.99935 * 8 7 6 39 39 H 0.97005 * 119.99856 * 359.97438 * 9 8 7 40 40 H 1.09005 * 109.46654 * 60.00688 * 12 10 9 41 41 H 1.08994 * 109.47817 * 300.00612 * 12 10 9 42 42 H 1.07997 * 119.87973 * 0.02562 * 14 13 12 43 43 H 1.08002 * 119.75105 * 179.69903 * 15 14 13 44 44 H 1.08001 * 119.87420 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.13317 * 180.02562 * 17 16 15 46 46 H 0.97004 * 120.00606 * 353.58738 * 22 21 19 47 47 H 1.09002 * 113.61418 * 89.11471 * 27 7 6 48 48 H 1.09002 * 113.61659 * 220.01995 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 8 1.7962 2.0097 -1.2249 5 6 2.1181 1.2536 -2.3939 6 6 1.6708 2.1308 1.2524 7 6 2.9222 1.5156 1.9008 8 6 3.7266 2.5076 2.7434 9 7 4.8242 1.8036 3.4111 10 6 5.6710 2.4809 4.2115 11 8 5.5241 3.6730 4.3793 12 6 6.7998 1.7566 4.8988 13 6 7.5921 2.7338 5.7286 14 6 8.7198 3.3270 5.2080 15 6 9.4541 4.2210 5.9714 16 6 9.0592 4.5334 7.2634 17 6 7.9318 3.9572 7.8019 18 6 7.1783 3.0480 7.0361 19 6 6.0177 2.4501 7.5789 20 1 5.2310 2.1059 6.9240 21 6 5.8885 2.3043 8.9648 22 7 6.9561 2.2339 9.7174 23 14 4.1914 2.2103 9.7397 24 1 4.3267 2.0571 11.2106 25 1 3.4400 3.4552 9.4383 26 1 3.4585 1.0434 9.1864 27 6 3.4720 1.3289 0.4769 28 1 -0.3634 0.4451 -0.9262 29 1 -0.3633 -1.0248 0.0776 30 1 -0.3633 0.5795 0.8486 31 1 2.0160 1.8864 -3.2755 32 1 3.1443 0.8930 -2.3223 33 1 1.4396 0.4045 -2.4757 34 1 0.7389 1.8325 1.7326 35 1 1.7432 3.2074 1.0988 36 1 2.7279 0.5779 2.4216 37 1 3.0760 2.9595 3.4920 38 1 4.1335 3.2860 2.0980 39 1 4.9414 0.8500 3.2771 40 1 7.4502 1.3040 4.1502 41 1 6.3926 0.9786 5.5445 42 1 9.0363 3.0914 4.2027 43 1 10.3404 4.6781 5.5567 44 1 9.6387 5.2316 7.8491 45 1 7.6256 4.2022 8.8082 46 1 7.8351 2.1889 9.3095 47 1 4.0369 2.1864 0.1110 48 1 3.9942 0.3833 0.3308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262663576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:29 Heat of formation + Delta-G solvation = -117.622798 kcal Electronic energy + Delta-G solvation = -28453.259111 eV Core-core repulsion = 24472.556692 eV Total energy + Delta-G solvation = -3980.702419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.53048 -40.69687 -39.30692 -37.57254 -37.06474 -35.72068 -34.99666 -33.50086 -31.09885 -29.77411 -28.29768 -28.11603 -27.19215 -26.54971 -26.40041 -23.14733 -22.81687 -22.23852 -21.28472 -20.50674 -19.59899 -18.76000 -17.75127 -17.37108 -17.03023 -16.88675 -16.75667 -16.50622 -16.09527 -15.78790 -15.68351 -15.54248 -15.34351 -14.95542 -14.76936 -14.42516 -14.20440 -13.91280 -13.81626 -13.55388 -13.43284 -13.14123 -12.96887 -12.84545 -12.69611 -12.58585 -12.43265 -12.22816 -12.05593 -11.98630 -11.97528 -11.53812 -11.47001 -11.20281 -10.98206 -10.83389 -10.78676 -10.71352 -10.00223 -9.42812 -9.41428 -9.03784 -6.37664 0.92720 1.00178 1.48018 1.63337 1.77442 1.82716 2.29245 2.32920 2.44088 2.65187 2.73673 3.36547 3.46926 3.60461 3.66242 3.94675 4.10496 4.22724 4.31329 4.36477 4.41151 4.42655 4.48944 4.51409 4.52603 4.57797 4.60592 4.66158 4.70163 4.72470 4.75653 4.80463 4.86797 4.94805 4.98892 5.01146 5.09391 5.23158 5.34482 5.51777 5.52341 5.57248 5.81634 5.85869 6.00595 6.06714 6.31284 6.42085 6.46986 6.68175 6.88629 7.04005 7.44341 8.10068 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002634 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.090724 B =10627.401351 C =12096.785505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.385 6.385 3 C 0.234 3.766 4 O -0.402 6.402 5 C 0.030 3.970 6 C -0.134 4.134 7 C -0.100 4.100 8 C 0.135 3.865 9 N -0.721 5.721 10 C 0.515 3.485 11 O -0.577 6.577 12 C -0.070 4.070 13 C -0.190 4.190 14 C -0.081 4.081 15 C -0.252 4.252 16 C -0.098 4.098 17 C -0.245 4.245 18 C 0.085 3.915 19 C -0.541 4.541 20 H 0.069 0.931 21 C 0.004 3.996 22 N -0.820 5.820 23 Si 1.107 2.893 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.251 1.251 27 C -0.131 4.131 28 H 0.045 0.955 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.414 0.586 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.283 0.717 47 H 0.102 0.898 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -8.045 -20.038 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.306 6.306 3 C 0.157 3.843 4 O -0.323 6.323 5 C -0.066 4.066 6 C -0.172 4.172 7 C -0.119 4.119 8 C 0.012 3.988 9 N -0.375 5.375 10 C 0.303 3.697 11 O -0.456 6.456 12 C -0.109 4.109 13 C -0.191 4.191 14 C -0.099 4.099 15 C -0.271 4.271 16 C -0.116 4.116 17 C -0.265 4.265 18 C 0.082 3.918 19 C -0.569 4.569 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.443 5.443 23 Si 0.925 3.075 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.175 1.175 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.251 0.749 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.127 0.873 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.121 0.879 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.727 -7.287 -18.454 23.572 hybrid contribution 1.000 0.052 -1.300 1.641 sum -11.727 -7.235 -19.755 24.086 Atomic orbital electron populations 1.22941 0.79279 1.04066 1.01086 1.87992 1.21885 1.26616 1.94071 1.23937 0.94741 0.81316 0.84333 1.88043 1.88041 1.41145 1.15091 1.22743 0.99905 0.96835 0.87103 1.23550 0.99001 1.01450 0.93240 1.22431 0.95598 0.99442 0.94440 1.21218 0.87796 0.94703 0.95126 1.45867 1.30187 1.13021 1.48426 1.21101 0.83300 0.87313 0.77962 1.90666 1.74129 1.17710 1.63078 1.20276 0.94800 0.97441 0.98400 1.19544 0.98534 1.04599 0.96449 1.20814 0.94816 0.96019 0.98269 1.20720 1.03844 1.06794 0.95693 1.20894 0.96126 0.98636 0.95945 1.21144 1.00672 1.04002 1.00677 1.17795 0.91760 0.89924 0.92292 1.20534 1.03537 1.37972 0.94860 0.91281 1.28223 1.07742 0.90205 0.95001 1.70541 1.01288 1.31621 1.40893 0.83139 0.69566 0.78752 0.76059 1.19506 1.20101 1.17534 1.23591 0.94434 1.04176 0.94618 0.93613 0.87711 0.92708 0.88345 0.93471 0.93510 0.88791 0.88022 0.86734 0.92931 0.92278 0.74906 0.86809 0.88637 0.86255 0.86352 0.87327 0.89956 0.90448 0.87935 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.74 113.37 1.22 1.49 16 2 O -0.39 -6.66 9.78 -126.64 -1.24 -7.90 16 3 C 0.23 4.09 1.04 31.12 0.03 4.12 16 4 O -0.40 -7.68 10.53 -126.64 -1.33 -9.01 16 5 C 0.03 0.42 10.65 113.37 1.21 1.63 16 6 C -0.13 -2.23 7.00 31.12 0.22 -2.01 16 7 C -0.10 -1.73 3.69 -10.27 -0.04 -1.76 16 8 C 0.14 3.29 5.51 86.38 0.48 3.76 16 9 N -0.72 -19.32 5.56 -463.07 -2.57 -21.89 16 10 C 0.52 19.64 7.46 87.66 0.65 20.29 16 11 O -0.58 -28.22 16.03 -3.03 -0.05 -28.27 16 12 C -0.07 -2.63 5.18 29.10 0.15 -2.48 16 13 C -0.19 -9.10 4.43 -19.40 -0.09 -9.19 16 14 C -0.08 -3.62 9.66 22.22 0.21 -3.41 16 15 C -0.25 -11.35 10.05 22.46 0.23 -11.13 16 16 C -0.10 -4.78 10.02 22.22 0.22 -4.56 16 17 C -0.25 -13.55 7.97 22.73 0.18 -13.37 16 18 C 0.08 4.66 5.29 -21.29 -0.11 4.55 16 19 C -0.54 -29.41 8.07 23.46 0.19 -29.22 16 20 H 0.07 3.67 6.74 -2.91 -0.02 3.65 16 21 C 0.00 0.23 4.93 85.26 0.42 0.65 16 22 N -0.82 -45.30 12.31 21.83 0.27 -45.03 16 23 Si 1.11 44.86 30.00 68.60 2.06 46.92 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 25 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 27 C -0.13 -2.15 7.12 31.12 0.22 -1.93 16 28 H 0.05 0.57 8.00 -2.39 -0.02 0.55 16 29 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.05 0.62 6.42 -2.39 -0.02 0.61 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.63 8.02 -2.38 -0.02 0.61 16 33 H 0.05 0.63 7.64 -2.39 -0.02 0.61 16 34 H 0.09 1.36 6.52 -2.39 -0.02 1.34 16 35 H 0.10 1.76 8.10 -2.39 -0.02 1.74 16 36 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.55 7.84 -2.39 -0.02 1.53 16 39 H 0.41 8.13 8.47 -92.70 -0.79 7.35 16 40 H 0.11 3.36 8.06 -2.38 -0.02 3.34 16 41 H 0.10 3.62 7.06 -2.39 -0.02 3.60 16 42 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 43 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 44 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 45 H 0.08 4.77 6.53 -2.91 -0.02 4.75 16 46 H 0.28 16.27 6.75 -92.71 -0.63 15.64 16 47 H 0.10 1.76 7.90 -2.39 -0.02 1.74 16 48 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -72.16 393.28 2.85 -69.31 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: 0.32 Total: 38.45 kcal Atomic # 6 Polarization: -47.97 SS G_CDS: 5.40 Total: -42.57 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -2.30 Total: -66.92 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -2.62 Total: -45.18 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.06 Total: 46.92 kcal Total: -72.16 2.85 -69.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262663576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.317 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds