Wall clock time and date at job start Tue Mar 31 2020 17:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47131 * 2 1 4 4 O 1.45199 * 109.47601 * 120.00169 * 2 1 3 5 5 C 1.34225 * 116.99869 * 89.99408 * 4 2 1 6 6 O 1.20829 * 120.00437 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99884 * 180.02562 * 5 4 2 8 8 H 1.08991 * 109.47177 * 60.00399 * 7 5 4 9 9 C 1.52995 * 109.47006 * 300.00236 * 7 5 4 10 10 C 1.52999 * 109.46987 * 180.02562 * 7 5 4 11 11 N 1.46498 * 109.47144 * 184.99893 * 10 7 5 12 12 C 1.34776 * 120.00287 * 179.97438 * 11 10 7 13 13 O 1.21276 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00086 * 180.02562 * 12 11 10 15 15 H 1.08999 * 109.46645 * 299.99912 * 14 12 11 16 16 C 1.50700 * 109.47233 * 59.99636 * 14 12 11 17 17 H 1.07993 * 119.99891 * 235.34208 * 16 14 12 18 18 C 1.37879 * 119.99973 * 55.34539 * 16 14 12 19 19 N 1.31518 * 119.99917 * 1.98288 * 18 16 14 20 20 Si 1.86791 * 119.99880 * 181.97500 * 18 16 14 21 21 H 1.48502 * 109.47303 * 60.00336 * 20 18 16 22 22 H 1.48501 * 109.47006 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47386 * 300.00123 * 20 18 16 24 24 C 1.50700 * 109.47047 * 180.02562 * 14 12 11 25 25 C 1.38238 * 119.99738 * 226.94470 * 24 14 12 26 26 C 1.38241 * 119.99549 * 179.78850 * 25 24 14 27 27 C 1.38228 * 120.00135 * 0.43795 * 26 25 24 28 28 C 1.38237 * 120.00224 * 359.81259 * 27 26 25 29 29 C 1.38235 * 119.99975 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46603 * 299.99796 * 1 2 3 32 32 H 1.08995 * 109.47505 * 59.99458 * 1 2 3 33 33 H 1.09004 * 109.47030 * 240.00354 * 2 1 3 34 34 H 1.09002 * 109.46954 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46911 * 300.00381 * 3 2 1 36 36 H 1.08999 * 109.47211 * 60.00576 * 3 2 1 37 37 H 1.09000 * 109.47568 * 300.00083 * 9 7 5 38 38 H 1.08994 * 109.47533 * 60.00070 * 9 7 5 39 39 H 1.09007 * 109.47367 * 179.97438 * 9 7 5 40 40 H 1.09001 * 109.47519 * 65.00249 * 10 7 5 41 41 H 1.08999 * 109.47349 * 304.99781 * 10 7 5 42 42 H 0.97007 * 120.00083 * 359.72632 * 11 10 7 43 43 H 0.96994 * 119.99990 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.00152 * 359.97438 * 25 24 14 45 45 H 1.07999 * 119.99430 * 180.27231 * 26 25 24 46 46 H 1.08004 * 120.00229 * 179.83585 * 27 26 25 47 47 H 1.07998 * 120.00073 * 180.02562 * 28 27 26 48 48 H 1.07991 * 120.00193 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2172 -2.0075 1.0850 6 8 1.9981 -2.5748 0.0409 7 6 2.7184 -2.7854 2.2745 8 1 2.0090 -2.6896 3.0964 9 6 4.0784 -2.2345 2.7078 10 6 2.8636 -4.2604 1.8948 11 7 3.2357 -5.0356 3.0809 12 6 3.4190 -6.3674 2.9853 13 8 3.2764 -6.9241 1.9174 14 6 3.8012 -7.1649 4.2056 15 1 4.7487 -6.7961 4.5985 16 6 2.7309 -7.0192 5.2565 17 1 2.9890 -6.6701 6.2453 18 6 1.4221 -7.3316 4.9555 19 7 1.1139 -7.7937 3.7634 20 14 0.0870 -7.0986 6.2409 21 1 0.0313 -5.6703 6.6436 22 1 -1.2235 -7.5045 5.6725 23 1 0.3917 -7.9362 7.4286 24 6 3.9443 -8.6177 3.8317 25 6 3.3563 -9.5940 4.6140 26 6 3.4839 -10.9264 4.2685 27 6 4.2072 -11.2831 3.1458 28 6 4.7996 -10.3072 2.3664 29 6 4.6683 -8.9745 2.7094 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 4.7879 -2.3303 1.8859 38 1 3.9754 -1.1836 2.9781 39 1 4.4407 -2.7968 3.5684 40 1 3.6377 -4.3654 1.1346 41 1 1.9162 -4.6295 1.5021 42 1 3.3536 -4.5898 3.9344 43 1 0.1931 -8.0131 3.5515 44 1 2.7946 -9.3155 5.4935 45 1 3.0208 -11.6888 4.8773 46 1 4.3091 -12.3242 2.8774 47 1 5.3643 -10.5858 1.4890 48 1 5.1308 -8.2120 2.1002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411303480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:44 Heat of formation + Delta-G solvation = -112.413039 kcal Electronic energy + Delta-G solvation = -29062.827064 eV Core-core repulsion = 25082.350557 eV Total energy + Delta-G solvation = -3980.476507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71451 -38.95131 -37.62699 -36.95665 -35.16316 -33.58403 -33.34664 -31.67942 -30.78511 -29.63736 -27.56338 -27.54206 -26.07974 -24.48831 -23.59477 -21.49229 -21.21461 -20.52428 -20.10342 -19.27509 -17.66990 -16.92868 -16.53565 -16.07167 -15.79003 -15.16668 -14.98682 -14.77728 -14.64097 -14.16090 -13.99848 -13.89399 -13.57452 -13.33512 -13.01806 -12.86280 -12.59128 -12.53146 -12.35994 -12.22791 -12.12099 -12.00963 -11.89518 -11.85132 -11.29054 -11.19699 -11.10409 -10.96650 -10.93937 -10.77259 -10.69206 -10.41540 -10.27432 -10.02233 -9.64801 -9.36369 -8.69816 -8.29214 -7.99409 -7.65413 -7.36520 -6.11780 -4.28915 2.21946 2.50603 2.60119 2.65122 3.20571 3.28568 3.29835 4.14334 4.26425 4.40382 4.53527 4.58590 4.65475 4.85665 4.88925 4.93349 5.06798 5.15632 5.21837 5.24356 5.43010 5.49337 5.57703 5.70496 5.74158 5.76355 5.89026 5.89731 6.00531 6.04831 6.09119 6.21024 6.29998 6.42722 6.44832 6.61647 6.71311 6.83933 6.93239 7.16773 7.24977 7.49075 7.59138 7.67621 7.70122 7.76420 7.82189 8.19648 8.30332 8.61233 8.81466 9.37801 9.71856 10.88439 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.003073 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.740503 B = 9108.532192 C =10147.601187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.078 3.922 3 C -0.148 4.148 4 O -0.353 6.353 5 C 0.470 3.530 6 O -0.500 6.500 7 C -0.095 4.095 8 H 0.115 0.885 9 C -0.142 4.142 10 C 0.144 3.856 11 N -0.736 5.736 12 C 0.551 3.449 13 O -0.544 6.544 14 C 0.058 3.942 15 H 0.057 0.943 16 C -0.543 4.543 17 H 0.066 0.934 18 C 0.075 3.925 19 N -0.840 5.840 20 Si 0.886 3.114 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.015 4.015 25 C -0.065 4.065 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.144 4.144 29 C -0.100 4.100 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.395 0.605 43 H 0.266 0.734 44 H 0.128 0.872 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 13.986 -2.167 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 C -0.205 4.205 4 O -0.270 6.270 5 C 0.312 3.688 6 O -0.387 6.387 7 C -0.114 4.114 8 H 0.133 0.867 9 C -0.200 4.200 10 C 0.019 3.981 11 N -0.390 5.390 12 C 0.340 3.660 13 O -0.420 6.420 14 C 0.037 3.963 15 H 0.075 0.925 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.134 4.134 19 N -0.472 5.472 20 Si 0.714 3.286 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.016 4.016 25 C -0.083 4.083 26 C -0.166 4.166 27 C -0.163 4.163 28 C -0.163 4.163 29 C -0.118 4.118 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.229 0.771 43 H 0.076 0.924 44 H 0.146 0.854 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.067 13.342 -3.450 14.118 hybrid contribution -1.302 0.279 0.718 1.513 sum 1.764 13.621 -2.732 14.004 Atomic orbital electron populations 1.22212 0.94354 1.03286 1.02953 1.22720 0.94637 0.93013 0.87320 1.21879 1.02069 0.93530 1.03061 1.86564 1.77075 1.22394 1.40976 1.23624 0.74041 0.81068 0.90034 1.90688 1.47428 1.69832 1.30745 1.21266 1.00231 0.94943 0.95006 0.86717 1.21779 0.94025 1.01568 1.02591 1.20827 1.01764 0.86198 0.89275 1.45767 1.74252 1.08482 1.10544 1.21033 0.74159 0.80349 0.90495 1.90555 1.50988 1.69477 1.30943 1.17864 0.97154 0.88959 0.92325 0.92523 1.20651 0.91221 1.48917 0.97239 0.91538 1.25058 0.98720 0.94300 0.95286 1.70062 1.19213 1.38915 1.19044 0.86740 0.81294 0.78747 0.81847 1.20113 1.21329 1.19972 1.19822 0.92839 0.95967 0.92929 1.21143 0.96135 0.90977 1.00055 1.20985 1.01149 0.96505 0.97973 1.20768 1.00865 0.97808 0.96880 1.20822 1.02243 0.93609 0.99588 1.20977 0.99290 0.94968 0.96607 0.91805 0.91522 0.90796 0.89751 0.91688 0.90502 0.91384 0.92025 0.91347 0.90361 0.91868 0.91388 0.77076 0.92417 0.85448 0.88082 0.88246 0.88126 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.55 37.16 0.35 -1.25 16 2 C 0.08 0.80 3.18 -26.73 -0.09 0.72 16 3 C -0.15 -1.08 9.57 37.16 0.36 -0.72 16 4 O -0.35 -4.34 9.78 -39.25 -0.38 -4.73 16 5 C 0.47 6.76 7.23 36.01 0.26 7.02 16 6 O -0.50 -8.73 15.14 -18.75 -0.28 -9.01 16 7 C -0.09 -1.27 2.87 -91.77 -0.26 -1.54 16 8 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 9 C -0.14 -1.51 9.00 37.16 0.33 -1.18 16 10 C 0.14 2.56 4.41 -4.04 -0.02 2.54 16 11 N -0.74 -14.08 5.19 -60.29 -0.31 -14.39 16 12 C 0.55 12.89 5.45 -10.98 -0.06 12.83 16 13 O -0.54 -14.65 13.95 5.56 0.08 -14.57 16 14 C 0.06 1.35 2.77 -94.07 -0.26 1.09 16 15 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 16 C -0.54 -12.94 7.12 -34.44 -0.25 -13.19 16 17 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 18 C 0.07 1.86 4.01 -17.82 -0.07 1.79 16 19 N -0.84 -22.91 10.90 55.43 0.60 -22.31 16 20 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.01 -0.35 4.51 -104.62 -0.47 -0.82 16 25 C -0.07 -1.53 8.21 -39.58 -0.32 -1.85 16 26 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 27 C -0.15 -2.91 10.05 -39.59 -0.40 -3.31 16 28 C -0.14 -3.01 10.05 -39.58 -0.40 -3.41 16 29 C -0.10 -2.30 8.21 -39.58 -0.33 -2.62 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.96 7.16 -51.93 -0.37 0.59 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 39 H 0.08 0.79 7.18 -51.93 -0.37 0.42 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.43 7.95 -51.93 -0.41 1.02 16 42 H 0.40 6.60 7.54 -40.82 -0.31 6.29 16 43 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.13 3.07 6.04 -52.49 -0.32 2.76 16 45 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 46 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 47 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 48 H 0.11 2.43 7.01 -52.49 -0.37 2.06 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -31.39 394.75 -9.00 -40.39 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.61 Total: 11.51 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.01 Total: -7.42 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.29 Total: -36.69 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.59 Total: -28.31 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.39 -9.00 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411303480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.025 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds