Wall clock time and date at job start Tue Mar 31 2020 17:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47131 * 2 1 4 4 O 1.45199 * 109.47601 * 120.00169 * 2 1 3 5 5 C 1.34225 * 116.99869 * 89.99408 * 4 2 1 6 6 O 1.20829 * 120.00437 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99884 * 180.02562 * 5 4 2 8 8 H 1.08991 * 109.47177 * 60.00399 * 7 5 4 9 9 C 1.52995 * 109.47006 * 300.00236 * 7 5 4 10 10 C 1.52999 * 109.46987 * 180.02562 * 7 5 4 11 11 N 1.46498 * 109.47144 * 184.99893 * 10 7 5 12 12 C 1.34776 * 120.00287 * 179.97438 * 11 10 7 13 13 O 1.21276 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00086 * 180.02562 * 12 11 10 15 15 H 1.08999 * 109.46645 * 299.99912 * 14 12 11 16 16 C 1.50700 * 109.47233 * 59.99636 * 14 12 11 17 17 H 1.07993 * 119.99891 * 235.34208 * 16 14 12 18 18 C 1.37879 * 119.99973 * 55.34539 * 16 14 12 19 19 N 1.31518 * 119.99917 * 1.98288 * 18 16 14 20 20 Si 1.86791 * 119.99880 * 181.97500 * 18 16 14 21 21 H 1.48502 * 109.47303 * 60.00336 * 20 18 16 22 22 H 1.48501 * 109.47006 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47386 * 300.00123 * 20 18 16 24 24 C 1.50700 * 109.47047 * 180.02562 * 14 12 11 25 25 C 1.38238 * 119.99738 * 226.94470 * 24 14 12 26 26 C 1.38241 * 119.99549 * 179.78850 * 25 24 14 27 27 C 1.38228 * 120.00135 * 0.43795 * 26 25 24 28 28 C 1.38237 * 120.00224 * 359.81259 * 27 26 25 29 29 C 1.38235 * 119.99975 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46603 * 299.99796 * 1 2 3 32 32 H 1.08995 * 109.47505 * 59.99458 * 1 2 3 33 33 H 1.09004 * 109.47030 * 240.00354 * 2 1 3 34 34 H 1.09002 * 109.46954 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46911 * 300.00381 * 3 2 1 36 36 H 1.08999 * 109.47211 * 60.00576 * 3 2 1 37 37 H 1.09000 * 109.47568 * 300.00083 * 9 7 5 38 38 H 1.08994 * 109.47533 * 60.00070 * 9 7 5 39 39 H 1.09007 * 109.47367 * 179.97438 * 9 7 5 40 40 H 1.09001 * 109.47519 * 65.00249 * 10 7 5 41 41 H 1.08999 * 109.47349 * 304.99781 * 10 7 5 42 42 H 0.97007 * 120.00083 * 359.72632 * 11 10 7 43 43 H 0.96994 * 119.99990 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.00152 * 359.97438 * 25 24 14 45 45 H 1.07999 * 119.99430 * 180.27231 * 26 25 24 46 46 H 1.08004 * 120.00229 * 179.83585 * 27 26 25 47 47 H 1.07998 * 120.00073 * 180.02562 * 28 27 26 48 48 H 1.07991 * 120.00193 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2172 -2.0075 1.0850 6 8 1.9981 -2.5748 0.0409 7 6 2.7184 -2.7854 2.2745 8 1 2.0090 -2.6896 3.0964 9 6 4.0784 -2.2345 2.7078 10 6 2.8636 -4.2604 1.8948 11 7 3.2357 -5.0356 3.0809 12 6 3.4190 -6.3674 2.9853 13 8 3.2764 -6.9241 1.9174 14 6 3.8012 -7.1649 4.2056 15 1 4.7487 -6.7961 4.5985 16 6 2.7309 -7.0192 5.2565 17 1 2.9890 -6.6701 6.2453 18 6 1.4221 -7.3316 4.9555 19 7 1.1139 -7.7937 3.7634 20 14 0.0870 -7.0986 6.2409 21 1 0.0313 -5.6703 6.6436 22 1 -1.2235 -7.5045 5.6725 23 1 0.3917 -7.9362 7.4286 24 6 3.9443 -8.6177 3.8317 25 6 3.3563 -9.5940 4.6140 26 6 3.4839 -10.9264 4.2685 27 6 4.2072 -11.2831 3.1458 28 6 4.7996 -10.3072 2.3664 29 6 4.6683 -8.9745 2.7094 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 4.7879 -2.3303 1.8859 38 1 3.9754 -1.1836 2.9781 39 1 4.4407 -2.7968 3.5684 40 1 3.6377 -4.3654 1.1346 41 1 1.9162 -4.6295 1.5021 42 1 3.3536 -4.5898 3.9344 43 1 0.1931 -8.0131 3.5515 44 1 2.7946 -9.3155 5.4935 45 1 3.0208 -11.6888 4.8773 46 1 4.3091 -12.3242 2.8774 47 1 5.3643 -10.5858 1.4890 48 1 5.1308 -8.2120 2.1002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411303480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:41 Heat of formation + Delta-G solvation = -129.593084 kcal Electronic energy + Delta-G solvation = -29063.572047 eV Core-core repulsion = 25082.350557 eV Total energy + Delta-G solvation = -3981.221490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.84672 -40.69617 -39.21037 -38.15198 -36.58501 -35.45712 -34.26791 -33.08282 -32.57724 -31.33547 -29.22482 -28.23062 -27.40017 -25.93035 -25.15186 -22.95840 -22.53145 -22.01804 -21.32832 -20.97236 -18.88130 -18.61433 -17.72975 -17.57340 -17.08481 -16.92039 -16.63908 -16.32676 -15.98223 -15.53928 -15.33967 -15.16817 -15.03809 -14.62899 -14.40667 -14.10200 -13.95094 -13.91184 -13.65284 -13.49678 -13.32879 -13.18725 -13.11542 -12.99383 -12.75833 -12.68578 -12.57595 -12.42133 -12.23573 -12.17742 -11.91761 -11.76559 -11.63043 -11.41012 -11.38614 -11.16153 -10.61235 -10.17421 -9.70578 -9.36471 -9.08324 -8.04117 -6.24720 0.89126 0.94451 1.07200 1.44909 1.48129 1.48891 1.53821 2.34214 2.48139 2.81220 3.23121 3.36521 3.41772 3.74994 3.78486 3.83369 3.92627 4.11225 4.15896 4.35189 4.36738 4.51474 4.59669 4.62996 4.65702 4.71841 4.72108 4.78860 4.83372 4.86253 4.89391 4.98482 5.02759 5.09482 5.12215 5.19080 5.20123 5.25425 5.44475 5.47337 5.56314 5.72483 5.86643 5.91271 5.97006 6.00634 6.44483 6.54937 6.64541 6.78752 7.09503 7.44887 7.93795 8.94336 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.003073 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.740503 B = 9108.532192 C =10147.601187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.067 3.933 3 C -0.141 4.141 4 O -0.346 6.346 5 C 0.474 3.526 6 O -0.540 6.540 7 C -0.086 4.086 8 H 0.130 0.870 9 C -0.136 4.136 10 C 0.153 3.847 11 N -0.721 5.721 12 C 0.547 3.453 13 O -0.586 6.586 14 C 0.050 3.950 15 H 0.074 0.926 16 C -0.533 4.533 17 H 0.077 0.923 18 C 0.039 3.961 19 N -0.876 5.876 20 Si 0.940 3.060 21 H -0.263 1.263 22 H -0.303 1.303 23 H -0.268 1.268 24 C -0.037 4.037 25 C -0.086 4.086 26 C -0.152 4.152 27 C -0.142 4.142 28 C -0.148 4.148 29 C -0.119 4.119 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.028 0.972 42 H 0.409 0.591 43 H 0.254 0.746 44 H 0.114 0.886 45 H 0.126 0.874 46 H 0.137 0.863 47 H 0.128 0.872 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 15.290 -0.932 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.012 3.988 3 C -0.198 4.198 4 O -0.263 6.263 5 C 0.318 3.682 6 O -0.429 6.429 7 C -0.105 4.105 8 H 0.148 0.852 9 C -0.193 4.193 10 C 0.028 3.972 11 N -0.375 5.375 12 C 0.337 3.663 13 O -0.465 6.465 14 C 0.028 3.972 15 H 0.092 0.908 16 C -0.571 4.571 17 H 0.095 0.905 18 C -0.166 4.166 19 N -0.510 5.510 20 Si 0.766 3.234 21 H -0.188 1.188 22 H -0.229 1.229 23 H -0.193 1.193 24 C -0.038 4.038 25 C -0.104 4.104 26 C -0.170 4.170 27 C -0.160 4.160 28 C -0.166 4.166 29 C -0.137 4.137 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.246 0.754 43 H 0.063 0.937 44 H 0.132 0.868 45 H 0.144 0.856 46 H 0.155 0.845 47 H 0.146 0.854 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.596 14.712 -2.154 15.298 hybrid contribution -1.424 -0.115 0.299 1.459 sum 2.172 14.597 -1.855 14.874 Atomic orbital electron populations 1.22224 0.93696 1.02017 1.04652 1.23068 0.95341 0.94414 0.85934 1.21890 1.02198 0.91155 1.04551 1.86551 1.76664 1.21063 1.42009 1.23739 0.73175 0.81739 0.89551 1.90681 1.49249 1.70716 1.32277 1.21175 1.02567 0.91781 0.94974 0.85185 1.21793 0.91806 1.02984 1.02732 1.20671 0.99162 0.88926 0.88480 1.45571 1.72801 1.07503 1.11613 1.21149 0.73731 0.81453 0.89969 1.90523 1.52969 1.70639 1.32377 1.17995 0.97816 0.89202 0.92150 0.90785 1.20899 0.91203 1.47356 0.97614 0.90466 1.25611 1.00544 0.94088 0.96333 1.70252 1.18490 1.41169 1.21106 0.85882 0.78342 0.79260 0.79883 1.18768 1.22935 1.19272 1.19975 0.93711 0.96361 0.93728 1.21137 0.96971 0.92229 1.00092 1.21317 1.00923 0.96155 0.98624 1.21171 0.99430 0.99548 0.95862 1.21191 1.02043 0.92916 1.00447 1.21047 1.00020 0.96023 0.96636 0.94494 0.90460 0.88496 0.91295 0.91499 0.88333 0.90529 0.92262 0.88910 0.89432 0.93008 0.95369 0.75436 0.93721 0.86846 0.85580 0.84500 0.85422 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.55 71.98 0.69 -2.33 16 2 C 0.07 1.31 3.18 30.60 0.10 1.41 16 3 C -0.14 -1.71 9.57 71.98 0.69 -1.02 16 4 O -0.35 -8.17 9.78 -51.37 -0.50 -8.67 16 5 C 0.47 13.72 7.23 71.24 0.51 14.23 16 6 O -0.54 -19.69 15.14 21.96 0.33 -19.36 16 7 C -0.09 -2.25 2.87 -11.54 -0.03 -2.29 16 8 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 9 C -0.14 -2.63 9.00 71.98 0.65 -1.98 16 10 C 0.15 5.61 4.41 86.38 0.38 6.00 16 11 N -0.72 -27.88 5.19 -463.06 -2.40 -30.28 16 12 C 0.55 26.25 5.45 87.66 0.48 26.73 16 13 O -0.59 -32.88 13.95 -3.02 -0.04 -32.92 16 14 C 0.05 2.31 2.77 -13.03 -0.04 2.27 16 15 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 16 C -0.53 -25.24 7.12 25.60 0.18 -25.06 16 17 H 0.08 3.43 7.81 -2.91 -0.02 3.41 16 18 C 0.04 1.93 4.01 84.65 0.34 2.27 16 19 N -0.88 -48.98 10.90 21.45 0.23 -48.75 16 20 Si 0.94 40.11 29.54 68.60 2.03 42.14 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 C -0.04 -1.78 4.51 -19.86 -0.09 -1.87 16 25 C -0.09 -4.05 8.21 22.27 0.18 -3.87 16 26 C -0.15 -6.24 10.05 22.27 0.22 -6.02 16 27 C -0.14 -5.41 10.05 22.27 0.22 -5.18 16 28 C -0.15 -6.00 10.05 22.27 0.22 -5.78 16 29 C -0.12 -5.52 8.21 22.27 0.18 -5.33 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.58 7.16 -2.38 -0.02 1.56 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.40 8.11 -2.39 -0.02 1.38 16 39 H 0.09 1.55 7.18 -2.38 -0.02 1.53 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.03 1.26 7.95 -2.39 -0.02 1.24 16 42 H 0.41 13.31 7.54 -92.70 -0.70 12.61 16 43 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.11 5.53 6.04 -2.91 -0.02 5.51 16 45 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 46 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 47 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 48 H 0.10 4.62 7.01 -2.92 -0.02 4.60 16 Total: -1.00 -70.49 394.75 4.80 -65.70 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: 0.25 Total: 39.98 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.89 Total: -7.82 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -2.17 Total: -79.03 kcal Atomic # 8 Polarization: -60.74 SS G_CDS: -0.21 Total: -60.96 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -70.49 4.80 -65.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411303480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.895 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds