Wall clock time and date at job start Tue Mar 31 2020 17:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46859 * 2 1 4 4 C 1.50698 * 109.47335 * 240.00441 * 2 1 3 5 5 O 1.21281 * 119.99924 * 266.43051 * 4 2 1 6 6 N 1.34776 * 120.00259 * 86.42601 * 4 2 1 7 7 C 1.47425 * 125.65216 * 174.82247 * 6 4 2 8 8 C 1.54909 * 104.83181 * 204.16581 * 7 6 4 9 9 C 1.55150 * 101.58150 * 322.98560 * 8 7 6 10 10 H 1.09002 * 110.72417 * 277.14368 * 9 8 7 11 11 N 1.46903 * 110.72198 * 153.86888 * 9 8 7 12 12 C 1.46892 * 111.00167 * 91.47520 * 11 9 8 13 13 C 1.50701 * 109.47312 * 180.02562 * 12 11 9 14 14 O 1.21298 * 119.99842 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00069 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99656 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00216 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99950 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99531 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00231 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47071 * 90.00113 * 20 18 16 22 22 H 1.48499 * 109.47182 * 210.00128 * 20 18 16 23 23 H 1.48496 * 109.47074 * 330.00149 * 20 18 16 24 24 C 1.47029 * 125.64882 * 354.85840 * 6 4 2 25 25 C 1.52998 * 109.47433 * 120.00042 * 2 1 3 26 26 C 1.53002 * 109.47347 * 295.00179 * 25 2 1 27 27 F 1.39904 * 109.46863 * 55.00371 * 25 2 1 28 28 F 1.39900 * 109.47274 * 175.00053 * 25 2 1 29 29 H 1.09003 * 109.46981 * 305.92979 * 1 2 3 30 30 H 1.09001 * 109.47078 * 65.93276 * 1 2 3 31 31 H 1.09003 * 109.47127 * 185.93203 * 1 2 3 32 32 H 1.08998 * 110.36109 * 322.99960 * 7 6 4 33 33 H 1.09000 * 110.36858 * 85.21059 * 7 6 4 34 34 H 1.09001 * 111.00508 * 81.06148 * 8 7 6 35 35 H 1.09001 * 111.00220 * 204.91064 * 8 7 6 36 36 H 1.00906 * 110.99454 * 327.52161 * 11 9 8 37 37 H 1.09001 * 109.47695 * 300.00621 * 12 11 9 38 38 H 1.09000 * 109.47368 * 60.00384 * 12 11 9 39 39 H 0.96993 * 120.00095 * 0.02562 * 15 13 12 40 40 H 0.97006 * 119.99862 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.88464 * 298.32979 * 24 6 4 42 42 H 1.09006 * 109.87656 * 59.48765 * 24 6 4 43 43 H 1.09004 * 109.47090 * 59.99466 * 26 25 2 44 44 H 1.08997 * 109.46874 * 179.97438 * 26 25 2 45 45 H 1.09001 * 109.46937 * 300.00170 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.2962 -1.8931 -1.1827 6 7 2.1884 -0.0312 -2.3841 7 6 2.7691 -0.5708 -3.6271 8 6 3.2909 0.6707 -4.3927 9 6 2.1987 1.7220 -4.0625 10 1 1.3434 1.6120 -4.7291 11 7 2.7471 3.0827 -4.1385 12 6 2.5717 3.6466 -5.4834 13 6 3.1456 5.0395 -5.5229 14 8 3.6514 5.5155 -4.5284 15 7 3.0968 5.7564 -6.6632 16 6 3.6193 7.0234 -6.6992 17 1 4.0704 7.4469 -5.8139 18 6 3.5686 7.7627 -7.8746 19 7 3.0192 7.2476 -8.9515 20 14 4.2811 9.4888 -7.9238 21 1 5.7109 9.4229 -8.3196 22 1 3.5313 10.3059 -8.9114 23 1 4.1677 10.1096 -6.5797 24 6 1.8084 1.3709 -2.6113 25 6 2.0400 -0.7212 1.2492 26 6 1.6353 0.0689 2.4953 27 9 1.4823 -2.0029 1.3080 28 9 3.4343 -0.8216 1.1931 29 1 -0.3633 0.6030 0.8322 30 1 -0.3633 0.4191 -0.9383 31 1 -0.3633 -1.0222 0.1062 32 1 3.5915 -1.2487 -3.3984 33 1 2.0055 -1.0852 -4.2105 34 1 4.2629 0.9844 -4.0121 35 1 3.3364 0.4780 -5.4646 36 1 3.7180 3.0970 -3.8641 37 1 3.0888 3.0203 -6.2104 38 1 1.5098 3.6838 -5.7262 39 1 2.6920 5.3760 -7.4583 40 1 2.9841 7.7636 -9.7722 41 1 0.7333 1.4899 -2.4774 42 1 2.3445 2.0174 -1.9165 43 1 0.5490 0.1471 2.5390 44 1 1.9983 -0.4452 3.3853 45 1 2.0699 1.0675 2.4494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661346252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:34 Heat of formation + Delta-G solvation = -170.366529 kcal Electronic energy + Delta-G solvation = -28947.458786 eV Core-core repulsion = 24442.532448 eV Total energy + Delta-G solvation = -4504.926338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 5.80 seconds Orbital eigenvalues (eV) -49.13155 -47.10309 -40.44159 -38.58890 -37.76712 -35.09082 -34.74779 -33.83659 -31.34594 -31.09163 -29.90171 -28.97918 -26.32269 -25.88595 -24.11991 -23.50639 -21.60329 -21.11268 -19.59366 -19.35654 -18.00320 -17.95635 -17.51424 -17.11549 -16.48241 -16.36506 -15.96586 -15.37242 -15.04068 -14.92096 -14.57179 -14.17077 -13.99188 -13.82238 -13.69618 -13.61468 -13.44303 -13.26656 -13.18253 -13.07423 -12.76310 -12.65667 -12.49257 -12.46252 -12.28253 -12.09525 -12.01896 -11.70228 -11.54387 -11.48566 -11.18852 -11.08743 -10.99475 -10.43457 -10.27033 -10.03812 -9.56504 -8.91210 -8.57459 -8.19360 -8.02260 -6.47148 -3.88160 2.28220 2.55424 3.14050 3.23370 3.28950 3.38246 3.65928 3.80075 3.84169 4.03380 4.04595 4.19122 4.32564 4.46578 4.55162 4.62205 4.66868 4.86040 4.99794 5.04235 5.05218 5.11457 5.16062 5.20805 5.21953 5.27976 5.40243 5.44169 5.51849 5.55034 5.63737 5.68405 5.75082 5.80380 5.87338 6.00220 6.18754 7.03795 7.18319 7.46926 7.50181 7.83692 8.00189 8.54721 9.12188 9.47852 9.98704 10.70406 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.002012 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.199245 B =13916.535594 C =14449.363299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.154 4.154 3 H 0.122 0.878 4 C 0.536 3.464 5 O -0.526 6.526 6 N -0.616 5.616 7 C 0.110 3.890 8 C -0.167 4.167 9 C 0.080 3.920 10 H 0.096 0.904 11 N -0.658 5.658 12 C 0.051 3.949 13 C 0.439 3.561 14 O -0.584 6.584 15 N -0.562 5.562 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.104 3.896 25 C 0.307 3.693 26 C -0.196 4.196 27 F -0.188 7.188 28 F -0.197 7.197 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.354 0.646 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -15.415 14.603 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 H 0.140 0.860 4 C 0.323 3.677 5 O -0.401 6.401 6 N -0.351 5.351 7 C -0.012 4.012 8 C -0.207 4.207 9 C -0.032 4.032 10 H 0.114 0.886 11 N -0.290 5.290 12 C -0.081 4.081 13 C 0.224 3.776 14 O -0.468 6.468 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.019 4.019 25 C 0.270 3.730 26 C -0.253 4.253 27 F -0.169 7.169 28 F -0.178 7.178 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.175 0.825 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.516 -15.396 15.425 22.747 hybrid contribution 0.862 0.125 -1.288 1.554 sum -5.655 -15.272 14.137 21.565 Atomic orbital electron populations 1.21781 0.90088 1.04232 1.04079 1.22440 1.00515 1.02343 0.92319 0.86003 1.19771 0.78056 0.86760 0.83115 1.90775 1.50334 1.14795 1.84214 1.48437 1.61915 1.13415 1.11334 1.22166 0.98197 0.96409 0.84445 1.23608 0.99880 0.95944 1.01261 1.22583 0.97544 0.87824 0.95236 0.88602 1.59988 1.25555 1.17415 1.26027 1.21702 1.01709 0.95282 0.89413 1.19770 0.85789 0.87359 0.84648 1.90532 1.49731 1.72004 1.34564 1.41862 1.52511 1.14754 1.10733 1.19700 1.34873 0.90152 0.98244 0.87892 1.25274 0.97424 1.00312 0.94913 1.69612 1.44404 1.38578 1.01620 0.85851 0.78705 0.81445 0.78264 1.20398 1.20897 1.19375 1.22131 1.00543 0.81113 0.98129 1.20689 0.75035 0.80898 0.96372 1.22837 1.04732 1.01754 0.96016 1.93038 1.84768 1.41765 1.97310 1.93038 1.30770 1.96500 1.97459 0.90276 0.90592 0.90728 0.90373 0.91158 0.90056 0.89420 0.82485 0.93567 0.89408 0.77440 0.91820 0.90662 0.89978 0.88858 0.89634 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.70 37.16 0.32 -0.62 16 2 C -0.15 -1.37 1.90 -91.77 -0.17 -1.55 16 3 H 0.12 0.86 7.22 -51.92 -0.37 0.49 16 4 C 0.54 6.57 6.60 -10.99 -0.07 6.50 16 5 O -0.53 -8.50 15.62 5.56 0.09 -8.41 16 6 N -0.62 -6.56 3.33 -170.52 -0.57 -7.13 16 7 C 0.11 1.10 6.89 -2.53 -0.02 1.08 16 8 C -0.17 -1.54 6.67 -24.59 -0.16 -1.71 16 9 C 0.08 0.81 3.27 -65.88 -0.22 0.59 16 10 H 0.10 0.89 7.83 -51.93 -0.41 0.48 16 11 N -0.66 -9.08 5.93 -106.06 -0.63 -9.71 16 12 C 0.05 0.80 6.03 -4.98 -0.03 0.77 16 13 C 0.44 9.75 7.82 -10.98 -0.09 9.66 16 14 O -0.58 -15.10 15.78 5.54 0.09 -15.01 16 15 N -0.56 -13.64 5.29 -10.96 -0.06 -13.70 16 16 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 17 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 18 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 19 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 20 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 C 0.10 0.97 6.06 -3.06 -0.02 0.96 16 25 C 0.31 3.06 1.54 -26.73 -0.04 3.02 16 26 C -0.20 -1.14 9.14 37.16 0.34 -0.80 16 27 F -0.19 -2.33 15.18 2.25 0.03 -2.30 16 28 F -0.20 -2.52 16.49 2.25 0.04 -2.48 16 29 H 0.08 0.33 6.86 -51.93 -0.36 -0.03 16 30 H 0.08 0.46 7.28 -51.93 -0.38 0.08 16 31 H 0.07 0.57 7.50 -51.93 -0.39 0.19 16 32 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.81 7.77 -51.93 -0.40 0.40 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.35 5.20 7.91 -39.29 -0.31 4.89 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 39 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.08 0.60 7.28 -51.93 -0.38 0.22 16 42 H 0.08 0.80 7.56 -51.93 -0.39 0.41 16 43 H 0.09 0.37 6.70 -51.93 -0.35 0.03 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -33.98 375.50 -6.57 -40.55 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.52 Total: 10.04 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.40 Total: 10.13 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.53 Total: -53.71 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.17 Total: -23.42 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.07 Total: -4.78 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.98 -6.57 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661346252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.812 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.80 seconds