Wall clock time and date at job start Tue Mar 31 2020 17:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46859 * 2 1 4 4 C 1.50698 * 109.47335 * 240.00441 * 2 1 3 5 5 O 1.21281 * 119.99924 * 266.43051 * 4 2 1 6 6 N 1.34776 * 120.00259 * 86.42601 * 4 2 1 7 7 C 1.47425 * 125.65216 * 174.82247 * 6 4 2 8 8 C 1.54909 * 104.83181 * 204.16581 * 7 6 4 9 9 C 1.55150 * 101.58150 * 322.98560 * 8 7 6 10 10 H 1.09002 * 110.72417 * 277.14368 * 9 8 7 11 11 N 1.46903 * 110.72198 * 153.86888 * 9 8 7 12 12 C 1.46892 * 111.00167 * 91.47520 * 11 9 8 13 13 C 1.50701 * 109.47312 * 180.02562 * 12 11 9 14 14 O 1.21298 * 119.99842 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00069 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99656 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00216 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99950 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99531 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00231 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47071 * 90.00113 * 20 18 16 22 22 H 1.48499 * 109.47182 * 210.00128 * 20 18 16 23 23 H 1.48496 * 109.47074 * 330.00149 * 20 18 16 24 24 C 1.47029 * 125.64882 * 354.85840 * 6 4 2 25 25 C 1.52998 * 109.47433 * 120.00042 * 2 1 3 26 26 C 1.53002 * 109.47347 * 295.00179 * 25 2 1 27 27 F 1.39904 * 109.46863 * 55.00371 * 25 2 1 28 28 F 1.39900 * 109.47274 * 175.00053 * 25 2 1 29 29 H 1.09003 * 109.46981 * 305.92979 * 1 2 3 30 30 H 1.09001 * 109.47078 * 65.93276 * 1 2 3 31 31 H 1.09003 * 109.47127 * 185.93203 * 1 2 3 32 32 H 1.08998 * 110.36109 * 322.99960 * 7 6 4 33 33 H 1.09000 * 110.36858 * 85.21059 * 7 6 4 34 34 H 1.09001 * 111.00508 * 81.06148 * 8 7 6 35 35 H 1.09001 * 111.00220 * 204.91064 * 8 7 6 36 36 H 1.00906 * 110.99454 * 327.52161 * 11 9 8 37 37 H 1.09001 * 109.47695 * 300.00621 * 12 11 9 38 38 H 1.09000 * 109.47368 * 60.00384 * 12 11 9 39 39 H 0.96993 * 120.00095 * 0.02562 * 15 13 12 40 40 H 0.97006 * 119.99862 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.88464 * 298.32979 * 24 6 4 42 42 H 1.09006 * 109.87656 * 59.48765 * 24 6 4 43 43 H 1.09004 * 109.47090 * 59.99466 * 26 25 2 44 44 H 1.08997 * 109.46874 * 179.97438 * 26 25 2 45 45 H 1.09001 * 109.46937 * 300.00170 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.2962 -1.8931 -1.1827 6 7 2.1884 -0.0312 -2.3841 7 6 2.7691 -0.5708 -3.6271 8 6 3.2909 0.6707 -4.3927 9 6 2.1987 1.7220 -4.0625 10 1 1.3434 1.6120 -4.7291 11 7 2.7471 3.0827 -4.1385 12 6 2.5717 3.6466 -5.4834 13 6 3.1456 5.0395 -5.5229 14 8 3.6514 5.5155 -4.5284 15 7 3.0968 5.7564 -6.6632 16 6 3.6193 7.0234 -6.6992 17 1 4.0704 7.4469 -5.8139 18 6 3.5686 7.7627 -7.8746 19 7 3.0192 7.2476 -8.9515 20 14 4.2811 9.4888 -7.9238 21 1 5.7109 9.4229 -8.3196 22 1 3.5313 10.3059 -8.9114 23 1 4.1677 10.1096 -6.5797 24 6 1.8084 1.3709 -2.6113 25 6 2.0400 -0.7212 1.2492 26 6 1.6353 0.0689 2.4953 27 9 1.4823 -2.0029 1.3080 28 9 3.4343 -0.8216 1.1931 29 1 -0.3633 0.6030 0.8322 30 1 -0.3633 0.4191 -0.9383 31 1 -0.3633 -1.0222 0.1062 32 1 3.5915 -1.2487 -3.3984 33 1 2.0055 -1.0852 -4.2105 34 1 4.2629 0.9844 -4.0121 35 1 3.3364 0.4780 -5.4646 36 1 3.7180 3.0970 -3.8641 37 1 3.0888 3.0203 -6.2104 38 1 1.5098 3.6838 -5.7262 39 1 2.6920 5.3760 -7.4583 40 1 2.9841 7.7636 -9.7722 41 1 0.7333 1.4899 -2.4774 42 1 2.3445 2.0174 -1.9165 43 1 0.5490 0.1471 2.5390 44 1 1.9983 -0.4452 3.3853 45 1 2.0699 1.0675 2.4494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661346252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:30 Heat of formation + Delta-G solvation = -195.508875 kcal Electronic energy + Delta-G solvation = -28948.549040 eV Core-core repulsion = 24442.532448 eV Total energy + Delta-G solvation = -4506.016592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 4.79 seconds Orbital eigenvalues (eV) -49.96651 -47.97159 -41.32539 -40.13985 -38.92118 -36.16785 -35.80308 -35.45180 -33.24073 -31.97945 -30.57423 -29.88255 -27.74122 -26.62595 -25.62300 -24.38248 -22.34457 -21.95490 -21.10015 -20.37525 -19.90026 -18.78785 -18.32740 -18.03492 -17.70588 -17.28645 -17.06363 -16.67953 -16.31411 -16.00166 -15.93315 -15.61368 -15.18309 -14.89098 -14.76994 -14.42998 -14.31270 -14.13846 -14.02564 -13.88688 -13.65094 -13.59091 -13.52459 -13.43401 -13.15145 -13.03645 -12.96533 -12.94280 -12.68159 -12.65201 -12.40538 -12.35747 -12.10879 -11.91369 -11.74302 -11.48221 -10.95568 -10.32135 -9.98837 -9.78062 -9.32217 -8.44845 -5.92935 1.38935 1.39449 1.43803 1.55828 1.74679 2.08974 2.30621 2.68852 2.81562 3.08312 3.22689 3.23213 3.38515 3.45505 3.58344 3.74766 3.84652 4.04050 4.05985 4.11588 4.25694 4.27015 4.37669 4.54098 4.58319 4.60743 4.66323 4.67877 4.73188 4.76052 4.78179 4.84344 4.92176 5.02411 5.02605 5.19310 5.21344 5.43407 5.90133 6.10858 6.30120 6.37161 6.62664 6.94238 7.15421 7.59880 8.15011 8.72350 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.002012 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.199245 B =13916.535594 C =14449.363299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.150 4.150 3 H 0.143 0.857 4 C 0.526 3.474 5 O -0.575 6.575 6 N -0.614 5.614 7 C 0.107 3.893 8 C -0.157 4.157 9 C 0.083 3.917 10 H 0.114 0.886 11 N -0.667 5.667 12 C 0.067 3.933 13 C 0.437 3.563 14 O -0.624 6.624 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.990 3.010 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.273 1.273 24 C 0.106 3.894 25 C 0.289 3.711 26 C -0.189 4.189 27 F -0.208 7.208 28 F -0.220 7.220 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.347 0.653 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 -14.714 14.563 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 H 0.161 0.839 4 C 0.315 3.685 5 O -0.455 6.455 6 N -0.347 5.347 7 C -0.015 4.015 8 C -0.197 4.197 9 C -0.027 4.027 10 H 0.132 0.868 11 N -0.299 5.299 12 C -0.066 4.066 13 C 0.225 3.775 14 O -0.510 6.510 15 N -0.212 5.212 16 C -0.461 4.461 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.814 3.186 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.198 1.198 24 C -0.017 4.017 25 C 0.252 3.748 26 C -0.246 4.246 27 F -0.189 7.189 28 F -0.201 7.201 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.167 0.833 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.859 -14.696 15.364 22.667 hybrid contribution 1.291 -0.153 -1.253 1.806 sum -6.568 -14.850 14.111 21.512 Atomic orbital electron populations 1.21834 0.88072 1.04025 1.05868 1.22551 1.02056 1.02548 0.90034 0.83901 1.20447 0.77389 0.86432 0.84263 1.90745 1.52673 1.17005 1.85066 1.48526 1.61130 1.13880 1.11212 1.22227 0.98129 0.96655 0.84530 1.23533 0.99116 0.95057 1.01996 1.22640 0.98054 0.85903 0.96149 0.86755 1.59969 1.25301 1.19711 1.24915 1.21569 1.02647 0.91155 0.91179 1.20941 0.84039 0.89338 0.83173 1.90504 1.51107 1.73607 1.35823 1.41938 1.53139 1.14382 1.11699 1.19640 1.36496 0.91971 0.98002 0.90346 1.26000 0.97415 1.03560 0.94310 1.69667 1.44721 1.39782 1.01931 0.84965 0.78266 0.77246 0.78113 1.19790 1.19690 1.19761 1.22196 1.01820 0.80060 0.97616 1.21401 0.73862 0.80590 0.98924 1.22875 1.06298 1.01711 0.93677 1.92993 1.84925 1.43435 1.97517 1.92986 1.32803 1.96598 1.97698 0.87187 0.89759 0.92252 0.91910 0.90048 0.90954 0.87898 0.83275 0.91133 0.87121 0.76911 0.91370 0.88455 0.90171 0.86578 0.89541 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.70 71.98 0.63 -0.89 16 2 C -0.15 -2.45 1.90 -11.54 -0.02 -2.48 16 3 H 0.14 1.67 7.22 -2.38 -0.02 1.65 16 4 C 0.53 12.70 6.60 87.66 0.58 13.28 16 5 O -0.58 -19.19 15.62 -3.03 -0.05 -19.24 16 6 N -0.61 -12.30 3.33 -811.79 -2.70 -15.00 16 7 C 0.11 2.02 6.89 86.85 0.60 2.62 16 8 C -0.16 -2.59 6.67 31.98 0.21 -2.38 16 9 C 0.08 1.44 3.27 46.10 0.15 1.59 16 10 H 0.11 1.64 7.83 -2.39 -0.02 1.62 16 11 N -0.67 -16.92 5.93 -489.47 -2.90 -19.83 16 12 C 0.07 1.92 6.03 85.56 0.52 2.43 16 13 C 0.44 19.17 7.82 87.66 0.69 19.85 16 14 O -0.62 -32.46 15.78 -3.09 -0.05 -32.51 16 15 N -0.57 -27.84 5.29 -306.97 -1.62 -29.47 16 16 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 17 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 18 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 19 N -0.92 -48.19 13.05 21.66 0.28 -47.91 16 20 Si 0.99 41.80 29.55 68.60 2.03 43.83 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 C 0.11 1.71 6.06 86.73 0.53 2.23 16 25 C 0.29 5.59 1.54 30.59 0.05 5.64 16 26 C -0.19 -1.81 9.14 71.98 0.66 -1.15 16 27 F -0.21 -5.25 15.18 44.97 0.68 -4.57 16 28 F -0.22 -5.74 16.49 44.97 0.74 -5.00 16 29 H 0.11 0.50 6.86 -2.39 -0.02 0.48 16 30 H 0.08 0.77 7.28 -2.39 -0.02 0.75 16 31 H 0.06 0.84 7.50 -2.39 -0.02 0.83 16 32 H 0.06 1.38 8.09 -2.39 -0.02 1.36 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.35 7.77 -2.39 -0.02 1.33 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.35 9.74 7.91 -89.69 -0.71 9.03 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.11 2.75 8.08 -2.39 -0.02 2.73 16 39 H 0.40 18.17 7.90 -92.71 -0.73 17.44 16 40 H 0.28 13.62 8.31 -92.70 -0.77 12.85 16 41 H 0.10 1.19 7.28 -2.39 -0.02 1.18 16 42 H 0.08 1.37 7.56 -2.38 -0.02 1.35 16 43 H 0.12 0.56 6.70 -2.38 -0.02 0.54 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.26 375.50 1.86 -74.39 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.40 Total: 32.09 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 5.86 Total: 23.20 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -6.95 Total: -112.20 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.10 Total: -51.75 kcal Atomic # 9 Polarization: -10.99 SS G_CDS: 1.42 Total: -9.56 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -76.26 1.86 -74.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661346252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.114 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.79 seconds