Wall clock time and date at job start Tue Mar 31 2020 17:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47173 * 2 1 4 4 C 1.53004 * 109.46983 * 240.00190 * 2 1 3 5 5 N 1.46903 * 109.47071 * 184.99893 * 4 2 1 6 6 C 1.46894 * 111.00047 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47067 * 179.97438 * 6 5 4 8 8 O 1.21292 * 120.00109 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99888 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99810 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99928 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99414 * 180.02562 * 10 9 7 13 13 N 1.31419 * 119.99683 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00480 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47004 * 90.00021 * 14 12 10 16 16 H 1.48497 * 109.47230 * 209.99862 * 14 12 10 17 17 H 1.48496 * 109.46920 * 330.00090 * 14 12 10 18 18 N 1.46501 * 109.47546 * 119.99787 * 2 1 3 19 19 C 1.34770 * 120.00182 * 275.00087 * 18 2 1 20 20 O 1.21281 * 120.00049 * 359.97438 * 19 18 2 21 21 C 1.50699 * 120.00075 * 179.97438 * 19 18 2 22 22 C 1.53006 * 112.85147 * 309.66802 * 21 19 18 23 23 C 1.53781 * 113.61400 * 80.86331 * 21 19 18 24 24 C 1.53957 * 87.01759 * 89.23274 * 23 21 19 25 25 F 1.39905 * 113.53506 * 270.81037 * 24 23 21 26 26 F 1.39896 * 113.74324 * 139.94505 * 24 23 21 27 27 C 1.53783 * 87.11454 * 25.36149 * 24 23 21 28 28 H 1.09001 * 109.47173 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46921 * 299.99866 * 1 2 3 30 30 H 1.08994 * 109.47255 * 60.00202 * 1 2 3 31 31 H 1.09002 * 109.46838 * 304.99388 * 4 2 1 32 32 H 1.09001 * 109.47122 * 64.99826 * 4 2 1 33 33 H 1.00906 * 111.00145 * 303.95251 * 5 4 2 34 34 H 1.08999 * 109.47289 * 299.99780 * 6 5 4 35 35 H 1.09007 * 109.47000 * 60.00208 * 6 5 4 36 36 H 0.96996 * 120.00333 * 0.02562 * 9 7 6 37 37 H 0.96992 * 120.00231 * 179.97438 * 13 12 10 38 38 H 0.97000 * 119.99725 * 94.99949 * 18 2 1 39 39 H 1.09001 * 109.47002 * 50.33006 * 22 21 19 40 40 H 1.08993 * 109.46955 * 170.33444 * 22 21 19 41 41 H 1.09000 * 109.47050 * 290.33272 * 22 21 19 42 42 H 1.08998 * 113.61545 * 203.74792 * 23 21 19 43 43 H 1.08993 * 113.61303 * 334.65249 * 23 21 19 44 44 H 1.08997 * 113.61737 * 220.09125 * 27 24 23 45 45 H 1.09000 * 113.61138 * 89.18266 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1905 6 6 4.0302 -1.5158 -2.3762 7 6 5.5316 -1.6042 -2.2808 8 8 6.1066 -1.1393 -1.3194 9 7 6.2353 -2.2009 -3.2634 10 6 7.6012 -2.2818 -3.1763 11 1 8.1132 -1.8678 -2.3203 12 6 8.3266 -2.8964 -4.1896 13 7 9.6358 -2.9744 -4.1059 14 14 7.4411 -3.6118 -5.6706 15 1 7.3219 -2.5732 -6.7254 16 1 8.2115 -4.7666 -6.1979 17 1 6.0858 -4.0642 -5.2660 18 7 2.0184 -0.6906 1.1962 19 6 2.1472 -0.0182 2.3571 20 8 1.8591 1.1586 2.4114 21 6 2.6491 -0.7287 3.5876 22 6 1.9012 -2.0341 3.8666 23 6 4.1793 -0.8734 3.6344 24 6 4.2060 0.4903 4.3484 25 9 4.2882 1.5781 3.4725 26 9 5.1351 0.5616 5.3919 27 6 2.7740 0.1847 4.8185 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9280 0.0826 -1.0825 34 1 3.6095 -2.5199 -2.4295 35 1 3.7556 -0.9587 -3.2720 36 1 5.7755 -2.5730 -4.0321 37 1 10.1422 -3.4038 -4.8130 38 1 2.2491 -1.6317 1.1526 39 1 1.8757 -2.6390 2.9602 40 1 2.4128 -2.5842 4.6563 41 1 0.8824 -1.8089 4.1820 42 1 4.5210 -1.6995 4.2580 43 1 4.6492 -0.8617 2.6510 44 1 2.1111 1.0494 4.7896 45 1 2.7308 -0.3517 5.7664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669446233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:22 Heat of formation + Delta-G solvation = -147.438662 kcal Electronic energy + Delta-G solvation = -29514.737367 eV Core-core repulsion = 25010.805256 eV Total energy + Delta-G solvation = -4503.932111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.77473 -47.10198 -40.62289 -38.60421 -37.78015 -36.41819 -34.40198 -33.76321 -31.70822 -31.36844 -29.55714 -27.80604 -26.50097 -25.15918 -24.31323 -23.13446 -22.12782 -20.94604 -19.56332 -19.37132 -18.37599 -17.48947 -16.93550 -16.84242 -16.59985 -16.25765 -15.92446 -15.37561 -15.06282 -14.89416 -14.45043 -14.31482 -14.11517 -13.92897 -13.63375 -13.49645 -13.35950 -13.30480 -13.20544 -12.85078 -12.73928 -12.73346 -12.56236 -12.30770 -12.26147 -12.12341 -11.76559 -11.72681 -11.23957 -11.19266 -11.16101 -10.99327 -10.62695 -10.55551 -10.00407 -9.85174 -9.60308 -9.11905 -8.64665 -8.26415 -8.19827 -6.33658 -3.85373 2.48953 2.96447 2.99308 3.03849 3.12467 3.37570 3.63280 3.70273 3.96456 3.98414 4.07548 4.09268 4.24387 4.58065 4.69537 4.79402 4.94401 4.98829 5.08247 5.15352 5.15737 5.20750 5.27967 5.33470 5.39376 5.46724 5.49197 5.51809 5.56724 5.62814 5.70187 5.74717 5.79367 5.86903 5.87471 5.97714 6.42263 6.97330 7.44657 7.47145 7.55158 8.11605 8.16522 8.56642 8.92226 9.39410 9.79281 10.79451 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.002882 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.839255 B = 9714.297090 C =11093.117552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.087 0.913 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.590 5.590 10 C -0.306 4.306 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.270 1.270 18 N -0.701 5.701 19 C 0.537 3.463 20 O -0.532 6.532 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.151 4.151 24 C 0.255 3.745 25 F -0.167 7.167 26 F -0.193 7.193 27 C -0.144 4.144 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.353 0.647 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.370 0.630 37 H 0.274 0.726 38 H 0.406 0.594 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.225 0.462 11.885 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.082 4.082 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.352 5.352 19 C 0.322 3.678 20 O -0.408 6.408 21 C -0.109 4.109 22 C -0.187 4.187 23 C -0.189 4.189 24 C 0.219 3.781 25 F -0.148 7.148 26 F -0.173 7.173 27 C -0.182 4.182 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.173 0.827 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.241 0.759 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.140 0.860 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.796 1.032 12.845 24.465 hybrid contribution -0.286 -0.322 -2.101 2.145 sum -21.082 0.710 10.744 23.673 Atomic orbital electron populations 1.22132 0.94909 1.02204 1.02673 1.20958 0.93610 0.97596 0.83861 0.89445 1.22319 0.89404 1.00708 0.95787 1.60054 1.03154 1.27103 1.39675 1.21711 0.95092 0.99990 0.91685 1.19698 0.87918 0.84207 0.84764 1.90578 1.70969 1.50443 1.32516 1.42208 1.07861 1.52912 1.19978 1.19432 0.79511 1.36039 1.08447 0.86291 1.25046 0.95440 0.97631 0.98043 1.69623 1.05088 1.43315 1.34029 0.86665 0.79559 0.79795 0.83303 1.19673 1.20165 1.19509 1.45716 1.66474 1.14407 1.08648 1.19652 0.77481 0.86749 0.83966 1.90712 1.49787 1.15418 1.84871 1.21718 0.96840 0.97851 0.94495 1.21665 1.00332 0.93868 1.02856 1.24253 0.94307 0.95948 1.04418 1.22015 0.88932 0.86276 0.80926 1.93097 1.96643 1.56451 1.68560 1.93000 1.68913 1.96916 1.58505 1.24056 0.94424 1.01372 0.98341 0.92312 0.91856 0.91599 0.90427 0.93802 0.82713 0.89486 0.93724 0.79722 0.91588 0.75896 0.91381 0.90891 0.91447 0.86022 0.87415 0.87641 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.48 37.16 0.35 -0.95 16 2 C 0.14 1.45 2.81 -67.93 -0.19 1.26 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C 0.05 0.47 5.24 -3.82 -0.02 0.45 16 5 N -0.67 -9.23 5.85 -115.06 -0.67 -9.91 16 6 C 0.05 0.73 6.17 -4.98 -0.03 0.70 16 7 C 0.45 9.80 7.82 -10.98 -0.09 9.71 16 8 O -0.56 -14.73 15.78 5.55 0.09 -14.64 16 9 N -0.59 -13.69 5.09 -10.96 -0.06 -13.74 16 10 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 14 Si 0.88 19.04 27.74 -169.99 -4.71 14.33 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 18 N -0.70 -7.19 4.69 -53.81 -0.25 -7.44 16 19 C 0.54 6.40 6.29 -10.99 -0.07 6.33 16 20 O -0.53 -8.16 14.47 5.56 0.08 -8.08 16 21 C -0.11 -0.98 1.25 -154.84 -0.19 -1.17 16 22 C -0.13 -0.79 9.09 37.16 0.34 -0.45 16 23 C -0.15 -1.56 7.02 -25.83 -0.18 -1.74 16 24 C 0.25 3.17 3.26 -25.82 -0.08 3.08 16 25 F -0.17 -2.68 15.76 2.25 0.04 -2.65 16 26 F -0.19 -2.52 17.41 2.25 0.04 -2.49 16 27 C -0.14 -1.35 6.82 -25.92 -0.18 -1.52 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.35 5.53 8.43 -39.29 -0.33 5.20 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 36 H 0.37 7.49 5.76 -40.82 -0.24 7.26 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.41 3.67 7.59 -40.82 -0.31 3.36 16 39 H 0.07 0.38 7.11 -51.93 -0.37 0.01 16 40 H 0.07 0.34 7.98 -51.93 -0.41 -0.07 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.12 0.95 7.99 -51.93 -0.41 0.54 16 43 H 0.11 1.34 8.09 -51.93 -0.42 0.92 16 44 H 0.11 1.11 7.41 -51.93 -0.38 0.72 16 45 H 0.12 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -34.67 379.28 -6.19 -40.85 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -6.63 Total: 14.79 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.59 Total: 8.04 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.21 Total: -55.87 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.17 Total: -22.73 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.07 Total: -5.13 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.67 -6.19 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669446233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.584 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds