Wall clock time and date at job start Tue Mar 31 2020 17:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47173 * 2 1 4 4 C 1.53004 * 109.46983 * 240.00190 * 2 1 3 5 5 N 1.46903 * 109.47071 * 184.99893 * 4 2 1 6 6 C 1.46894 * 111.00047 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47067 * 179.97438 * 6 5 4 8 8 O 1.21292 * 120.00109 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99888 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99810 * 180.02562 * 9 7 6 11 11 H 1.08000 * 119.99928 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99414 * 180.02562 * 10 9 7 13 13 N 1.31419 * 119.99683 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00480 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47004 * 90.00021 * 14 12 10 16 16 H 1.48497 * 109.47230 * 209.99862 * 14 12 10 17 17 H 1.48496 * 109.46920 * 330.00090 * 14 12 10 18 18 N 1.46501 * 109.47546 * 119.99787 * 2 1 3 19 19 C 1.34770 * 120.00182 * 275.00087 * 18 2 1 20 20 O 1.21281 * 120.00049 * 359.97438 * 19 18 2 21 21 C 1.50699 * 120.00075 * 179.97438 * 19 18 2 22 22 C 1.53006 * 112.85147 * 309.66802 * 21 19 18 23 23 C 1.53781 * 113.61400 * 80.86331 * 21 19 18 24 24 C 1.53957 * 87.01759 * 89.23274 * 23 21 19 25 25 F 1.39905 * 113.53506 * 270.81037 * 24 23 21 26 26 F 1.39896 * 113.74324 * 139.94505 * 24 23 21 27 27 C 1.53783 * 87.11454 * 25.36149 * 24 23 21 28 28 H 1.09001 * 109.47173 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46921 * 299.99866 * 1 2 3 30 30 H 1.08994 * 109.47255 * 60.00202 * 1 2 3 31 31 H 1.09002 * 109.46838 * 304.99388 * 4 2 1 32 32 H 1.09001 * 109.47122 * 64.99826 * 4 2 1 33 33 H 1.00906 * 111.00145 * 303.95251 * 5 4 2 34 34 H 1.08999 * 109.47289 * 299.99780 * 6 5 4 35 35 H 1.09007 * 109.47000 * 60.00208 * 6 5 4 36 36 H 0.96996 * 120.00333 * 0.02562 * 9 7 6 37 37 H 0.96992 * 120.00231 * 179.97438 * 13 12 10 38 38 H 0.97000 * 119.99725 * 94.99949 * 18 2 1 39 39 H 1.09001 * 109.47002 * 50.33006 * 22 21 19 40 40 H 1.08993 * 109.46955 * 170.33444 * 22 21 19 41 41 H 1.09000 * 109.47050 * 290.33272 * 22 21 19 42 42 H 1.08998 * 113.61545 * 203.74792 * 23 21 19 43 43 H 1.08993 * 113.61303 * 334.65249 * 23 21 19 44 44 H 1.08997 * 113.61737 * 220.09125 * 27 24 23 45 45 H 1.09000 * 113.61138 * 89.18266 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1905 6 6 4.0302 -1.5158 -2.3762 7 6 5.5316 -1.6042 -2.2808 8 8 6.1066 -1.1393 -1.3194 9 7 6.2353 -2.2009 -3.2634 10 6 7.6012 -2.2818 -3.1763 11 1 8.1132 -1.8678 -2.3203 12 6 8.3266 -2.8964 -4.1896 13 7 9.6358 -2.9744 -4.1059 14 14 7.4411 -3.6118 -5.6706 15 1 7.3219 -2.5732 -6.7254 16 1 8.2115 -4.7666 -6.1979 17 1 6.0858 -4.0642 -5.2660 18 7 2.0184 -0.6906 1.1962 19 6 2.1472 -0.0182 2.3571 20 8 1.8591 1.1586 2.4114 21 6 2.6491 -0.7287 3.5876 22 6 1.9012 -2.0341 3.8666 23 6 4.1793 -0.8734 3.6344 24 6 4.2060 0.4903 4.3484 25 9 4.2882 1.5781 3.4725 26 9 5.1351 0.5616 5.3919 27 6 2.7740 0.1847 4.8185 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9280 0.0826 -1.0825 34 1 3.6095 -2.5199 -2.4295 35 1 3.7556 -0.9587 -3.2720 36 1 5.7755 -2.5730 -4.0321 37 1 10.1422 -3.4038 -4.8130 38 1 2.2491 -1.6317 1.1526 39 1 1.8757 -2.6390 2.9602 40 1 2.4128 -2.5842 4.6563 41 1 0.8824 -1.8089 4.1820 42 1 4.5210 -1.6995 4.2580 43 1 4.6492 -0.8617 2.6510 44 1 2.1111 1.0494 4.7896 45 1 2.7308 -0.3517 5.7664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669446233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:21 Heat of formation + Delta-G solvation = -175.492591 kcal Electronic energy + Delta-G solvation = -29515.953877 eV Core-core repulsion = 25010.805256 eV Total energy + Delta-G solvation = -4505.148621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.82997 -48.18516 -41.49934 -40.28961 -38.70869 -37.44246 -36.05822 -35.14992 -33.73365 -32.23837 -30.20575 -29.07544 -27.30592 -26.63674 -25.22522 -24.36317 -23.03884 -21.81942 -21.24432 -20.43070 -20.19668 -18.48462 -18.02232 -17.75510 -17.62584 -17.38991 -17.23279 -16.77473 -16.43693 -16.01594 -15.62737 -15.50579 -15.20442 -15.00989 -14.85384 -14.71859 -14.45397 -14.37501 -14.24603 -14.19130 -14.01265 -13.57014 -13.39017 -13.31889 -13.13932 -13.10353 -12.96326 -12.79711 -12.66568 -12.40636 -11.99835 -11.97470 -11.91094 -11.77493 -11.50489 -11.44732 -10.78440 -10.43234 -10.24216 -9.98747 -9.34771 -8.40738 -6.01938 1.30534 1.36560 1.45590 1.58524 1.97838 2.16322 2.23845 2.48728 2.72281 2.78918 3.16024 3.17764 3.24270 3.36107 3.44984 3.79746 3.89373 4.14077 4.21508 4.25048 4.34642 4.39176 4.45253 4.49117 4.58583 4.60797 4.67098 4.68640 4.78073 4.82137 4.93338 4.94173 4.99097 5.09409 5.29644 5.31705 5.53015 5.59663 5.90130 6.03842 6.27948 6.60374 6.62084 6.89289 7.30332 7.41047 7.98582 8.77130 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.002882 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.839255 B = 9714.297090 C =11093.117552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.056 0.944 4 C 0.055 3.945 5 N -0.682 5.682 6 C 0.064 3.936 7 C 0.447 3.553 8 O -0.615 6.615 9 N -0.591 5.591 10 C -0.329 4.329 11 H 0.052 0.948 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.276 1.276 17 H -0.227 1.227 18 N -0.693 5.693 19 C 0.527 3.473 20 O -0.574 6.574 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.144 4.144 24 C 0.226 3.774 25 F -0.197 7.197 26 F -0.200 7.200 27 C -0.129 4.129 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.338 0.662 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.413 0.587 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.152 0.848 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.090 -2.199 10.462 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.074 0.926 4 C -0.074 4.074 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.500 6.500 9 N -0.233 5.233 10 C -0.458 4.458 11 H 0.070 0.930 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.184 1.184 16 H -0.202 1.202 17 H -0.150 1.150 18 N -0.344 5.344 19 C 0.313 3.687 20 O -0.454 6.454 21 C -0.101 4.101 22 C -0.182 4.182 23 C -0.182 4.182 24 C 0.190 3.810 25 F -0.178 7.178 26 F -0.181 7.181 27 C -0.167 4.167 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.170 0.830 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.706 -1.658 11.415 27.266 hybrid contribution 0.995 0.613 -1.546 1.938 sum -23.711 -1.045 9.869 25.704 Atomic orbital electron populations 1.22035 0.92914 1.03422 1.02492 1.20990 0.95038 0.96096 0.84076 0.92565 1.22392 0.86581 1.02391 0.96009 1.60067 1.05548 1.26274 1.39511 1.21644 0.89213 1.02604 0.93395 1.21094 0.90930 0.81471 0.83044 1.90564 1.73010 1.51886 1.34522 1.42024 1.06020 1.53889 1.21334 1.18992 0.82047 1.37436 1.07338 0.92969 1.26155 0.96187 0.97317 1.01866 1.69815 1.07605 1.44497 1.35803 0.85337 0.79838 0.78719 0.77422 1.18377 1.20159 1.14985 1.45725 1.65669 1.14665 1.08368 1.20204 0.76944 0.86433 0.85151 1.90691 1.51793 1.17277 1.85628 1.21696 0.96101 0.99185 0.93089 1.21719 1.00543 0.91891 1.04072 1.24307 0.95177 0.95541 1.03148 1.22756 0.90788 0.86311 0.81149 1.93028 1.96892 1.58162 1.69730 1.92975 1.69465 1.96940 1.58705 1.24107 0.91351 1.01216 1.00030 0.90276 0.93660 0.90206 0.87785 0.91974 0.84475 0.86016 0.90589 0.77411 0.91187 0.74978 0.90571 0.88723 0.90466 0.82983 0.90247 0.89050 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.48 71.98 0.68 -1.42 16 2 C 0.14 2.69 2.81 44.99 0.13 2.82 16 3 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 4 C 0.06 0.90 5.24 86.30 0.45 1.35 16 5 N -0.68 -17.64 5.85 -517.92 -3.03 -20.66 16 6 C 0.06 1.71 6.17 85.56 0.53 2.24 16 7 C 0.45 19.32 7.82 87.66 0.69 20.01 16 8 O -0.62 -33.54 15.78 -3.07 -0.05 -33.59 16 9 N -0.59 -26.97 5.09 -306.97 -1.56 -28.54 16 10 C -0.33 -19.10 10.16 84.04 0.85 -18.24 16 11 H 0.05 3.65 7.39 -2.91 -0.02 3.62 16 12 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 13 N -0.94 -56.39 13.96 21.66 0.30 -56.09 16 14 Si 0.97 37.92 27.74 68.60 1.90 39.82 16 15 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 16 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 18 N -0.69 -13.56 4.69 -442.54 -2.08 -15.63 16 19 C 0.53 12.63 6.29 87.66 0.55 13.18 16 20 O -0.57 -18.48 14.47 -3.03 -0.04 -18.53 16 21 C -0.10 -1.70 1.25 -52.40 -0.07 -1.76 16 22 C -0.13 -1.12 9.09 71.98 0.65 -0.47 16 23 C -0.14 -2.94 7.02 31.18 0.22 -2.72 16 24 C 0.23 5.80 3.26 31.18 0.10 5.90 16 25 F -0.20 -6.87 15.76 44.97 0.71 -6.16 16 26 F -0.20 -5.36 17.41 44.97 0.78 -4.58 16 27 C -0.13 -2.32 6.82 31.12 0.21 -2.11 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.34 10.61 8.43 -89.69 -0.76 9.85 16 34 H 0.12 2.54 8.14 -2.39 -0.02 2.53 16 35 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.39 14.49 5.76 -92.71 -0.53 13.95 16 37 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.41 6.68 7.59 -92.71 -0.70 5.98 16 39 H 0.08 0.58 7.11 -2.39 -0.02 0.57 16 40 H 0.09 0.49 7.98 -2.39 -0.02 0.47 16 41 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.15 2.10 7.99 -2.39 -0.02 2.08 16 43 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 44 H 0.09 1.95 7.41 -2.39 -0.02 1.93 16 45 H 0.15 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -85.48 379.28 1.40 -84.08 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -1.01 Total: 41.56 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 5.47 Total: 18.32 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -6.36 Total: -120.93 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.09 Total: -52.12 kcal Atomic # 9 Polarization: -12.23 SS G_CDS: 1.49 Total: -10.74 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.90 Total: 39.82 kcal Total: -85.48 1.40 -84.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669446233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.412 kcal (2) G-P(sol) polarization free energy of solvation -85.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds