Wall clock time and date at job start Tue Mar 31 2020 17:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46893 * 109.47087 * 2 1 4 4 C 1.46899 * 111.00503 * 76.02812 * 3 2 1 5 5 C 1.52998 * 109.47544 * 199.54687 * 4 3 2 6 6 C 1.52990 * 109.47468 * 174.88860 * 5 4 3 7 7 N 1.46501 * 109.47365 * 179.97438 * 6 5 4 8 8 C 1.34780 * 120.00264 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99891 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00030 * 179.97438 * 8 7 6 11 11 H 1.08994 * 115.55142 * 325.67009 * 10 8 7 12 12 C 1.53004 * 117.49703 * 180.02562 * 10 8 7 13 13 C 1.52997 * 117.49747 * 111.38134 * 10 8 7 14 14 F 1.39906 * 117.49714 * 214.97721 * 13 10 8 15 15 F 1.39896 * 117.49974 * 359.97438 * 13 10 8 16 16 C 1.46899 * 110.99775 * 199.97939 * 3 2 1 17 17 C 1.50698 * 109.47296 * 66.04663 * 16 3 2 18 18 O 1.21299 * 119.99828 * 359.97438 * 17 16 3 19 19 N 1.34774 * 120.00263 * 180.02562 * 17 16 3 20 20 C 1.37101 * 120.00029 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00241 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99926 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99849 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00287 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.46802 * 90.00106 * 24 22 20 26 26 H 1.48495 * 109.46997 * 210.00348 * 24 22 20 27 27 H 1.48506 * 109.46656 * 330.00341 * 24 22 20 28 28 H 1.08994 * 109.46836 * 174.87519 * 1 2 3 29 29 H 1.08998 * 109.46697 * 294.87655 * 1 2 3 30 30 H 1.08998 * 109.46849 * 54.87309 * 1 2 3 31 31 H 1.08994 * 109.46908 * 239.99415 * 2 1 3 32 32 H 1.09000 * 109.46635 * 119.99550 * 2 1 3 33 33 H 1.09000 * 109.47217 * 79.54062 * 4 3 2 34 34 H 1.09002 * 109.46996 * 319.54491 * 4 3 2 35 35 H 1.09006 * 109.47029 * 54.88827 * 5 4 3 36 36 H 1.09007 * 109.46876 * 294.89114 * 5 4 3 37 37 H 1.09001 * 109.47666 * 299.99843 * 6 5 4 38 38 H 1.09006 * 109.47022 * 59.99963 * 6 5 4 39 39 H 0.96996 * 119.99773 * 0.02562 * 7 6 5 40 40 H 1.08995 * 117.49868 * 359.97438 * 12 10 8 41 41 H 1.08999 * 117.49889 * 145.02449 * 12 10 8 42 42 H 1.09006 * 109.47205 * 186.04452 * 16 3 2 43 43 H 1.08994 * 109.47507 * 306.04826 * 16 3 2 44 44 H 0.96997 * 120.00019 * 359.97438 * 19 17 16 45 45 H 0.97001 * 120.00252 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9279 3.5158 1.2036 6 6 1.6586 4.1498 2.5696 7 7 1.7022 5.6091 2.4478 8 6 1.4925 6.3824 3.5317 9 8 1.2681 5.8701 4.6078 10 6 1.5379 7.8834 3.4065 11 1 2.2555 8.2735 2.6848 12 6 1.2923 8.7057 4.6732 13 6 0.2233 8.6468 3.5796 14 9 0.0341 9.7924 2.7991 15 9 -0.9289 7.8979 3.8413 16 6 3.4104 1.4516 -0.4686 17 6 3.4713 1.0498 -1.9197 18 8 2.4561 0.7380 -2.5059 19 7 4.6539 1.0358 -2.5661 20 6 4.7092 0.6707 -3.8864 21 1 3.8052 0.3940 -4.4085 22 6 5.9285 0.6558 -4.5526 23 7 5.9816 0.3054 -5.8180 24 14 7.4923 1.1338 -3.6494 25 1 8.0965 -0.0743 -3.0326 26 1 8.4541 1.7338 -4.6086 27 1 7.1690 2.1220 -2.5891 28 1 -0.3633 -1.0235 -0.0918 29 1 -0.3633 0.4323 0.9323 30 1 -0.3633 0.5913 -0.8405 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.7006 1.6561 1.9689 34 1 0.9320 1.6918 1.7709 35 1 1.1677 3.8437 0.4945 36 1 2.9121 3.8219 0.8486 37 1 0.6745 3.8438 2.9246 38 1 2.4188 3.8218 3.2786 39 1 1.8820 6.0188 1.5872 40 1 1.0975 8.1609 5.5969 41 1 1.8478 9.6369 4.7843 42 1 3.7828 2.4700 -0.3577 43 1 4.0258 0.7733 0.1223 44 1 5.4657 1.2847 -2.0973 45 1 6.8327 0.2954 -6.2832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752180694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:48 Heat of formation + Delta-G solvation = -131.268169 kcal Electronic energy + Delta-G solvation = -28045.373432 eV Core-core repulsion = 23542.142526 eV Total energy + Delta-G solvation = -4503.230906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.19529 -47.86564 -40.28477 -38.99416 -37.23956 -36.26138 -35.39850 -33.93578 -32.17994 -31.70983 -30.42720 -27.58894 -25.88071 -24.28261 -23.62254 -23.08409 -21.87514 -21.05114 -20.46111 -19.35895 -18.75011 -18.31920 -17.77999 -16.83561 -16.58071 -16.44429 -15.91253 -15.84484 -15.24827 -14.93948 -14.80359 -14.51539 -14.45920 -14.27248 -14.20004 -14.06042 -13.98426 -13.62229 -13.22392 -12.86844 -12.82948 -12.51033 -12.32008 -12.06300 -12.02227 -11.80798 -11.73181 -11.39801 -11.31164 -11.25098 -10.82744 -10.72633 -10.62759 -10.50729 -10.33433 -9.99639 -9.54616 -9.49106 -8.55751 -8.19822 -8.01740 -6.32986 -3.84380 1.64889 2.40328 2.58326 2.86192 2.99581 3.04143 3.12699 3.59551 3.71794 3.80464 3.91250 4.02145 4.07954 4.30892 4.63166 4.75039 4.81252 4.89477 4.97728 5.02664 5.18385 5.21809 5.24840 5.37594 5.41106 5.48687 5.52756 5.72392 5.75554 5.82245 5.85266 5.91475 5.97101 6.03456 6.14120 6.41311 6.54218 6.99921 7.18814 7.31210 7.56873 7.69848 8.12771 8.58434 8.93566 9.40677 9.81790 10.80165 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.002131 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.835812 B =13137.858229 C =14355.877849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.120 3.880 7 N -0.718 5.718 8 C 0.542 3.458 9 O -0.527 6.527 10 C -0.196 4.196 11 H 0.152 0.848 12 C -0.140 4.140 13 C 0.223 3.777 14 F -0.154 7.154 15 F -0.150 7.150 16 C 0.041 3.959 17 C 0.452 3.548 18 O -0.557 6.557 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.023 0.977 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.406 0.594 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 14.767 21.671 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 N -0.240 5.240 4 C -0.071 4.071 5 C -0.168 4.168 6 C -0.003 4.003 7 N -0.369 5.369 8 C 0.327 3.673 9 O -0.403 6.403 10 C -0.218 4.218 11 H 0.169 0.831 12 C -0.178 4.178 13 C 0.185 3.815 14 F -0.134 7.134 15 F -0.130 7.130 16 C -0.091 4.091 17 C 0.237 3.763 18 O -0.438 6.438 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.240 0.760 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.106 0.894 43 H 0.066 0.934 44 H 0.202 0.798 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.887 14.376 21.490 26.756 hybrid contribution 1.926 0.234 0.422 1.985 sum -4.962 14.610 21.911 26.799 Atomic orbital electron populations 1.21685 0.95160 1.01165 1.01617 1.22170 0.96169 0.88032 1.01286 1.61564 1.19300 1.19547 1.23557 1.22004 1.01433 0.93466 0.90185 1.21803 1.03466 0.95754 0.95748 1.21412 1.02547 0.78119 0.98267 1.45897 1.72085 1.07538 1.11410 1.19150 0.77000 0.86786 0.84383 1.90742 1.47835 1.74614 1.27098 1.23756 0.99696 0.93836 1.04520 0.83078 1.24316 0.96511 1.02396 0.94570 1.19652 0.80108 0.82972 0.98740 1.93077 1.95879 1.48816 1.75615 1.93093 1.50967 1.75130 1.93837 1.21938 0.89732 1.01760 0.95648 1.19659 0.84200 0.84481 0.87922 1.90555 1.33701 1.51555 1.68033 1.42231 1.07185 1.61883 1.11915 1.19420 0.97253 1.42239 0.84335 0.86276 1.25039 0.97847 0.97667 0.95649 1.69620 1.26555 1.47119 1.08872 0.86679 0.83821 0.79097 0.79817 1.19687 1.20191 1.19533 0.92819 0.93807 0.91422 0.88635 0.95894 0.94606 0.90329 0.89862 0.91123 0.91034 0.91207 0.75973 0.84559 0.84858 0.89359 0.93425 0.79793 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.96 37.16 0.37 -1.49 16 2 C 0.05 0.77 5.18 -3.82 -0.02 0.75 16 3 N -0.52 -7.66 4.10 -236.08 -0.97 -8.63 16 4 C 0.06 0.63 4.81 -3.83 -0.02 0.61 16 5 C -0.13 -1.20 5.36 -26.74 -0.14 -1.34 16 6 C 0.12 1.04 5.67 -4.05 -0.02 1.01 16 7 N -0.72 -5.66 5.56 -60.30 -0.33 -6.00 16 8 C 0.54 5.05 7.25 -10.99 -0.08 4.97 16 9 O -0.53 -6.78 16.26 5.56 0.09 -6.69 16 10 C -0.20 -1.23 6.17 -91.77 -0.57 -1.79 16 11 H 0.15 0.51 8.14 -51.93 -0.42 0.09 16 12 C -0.14 -0.74 10.02 -26.70 -0.27 -1.01 16 13 C 0.22 1.72 5.20 -26.71 -0.14 1.58 16 14 F -0.15 -1.25 17.60 2.25 0.04 -1.21 16 15 F -0.15 -1.57 17.13 2.25 0.04 -1.54 16 16 C 0.04 0.65 5.27 -4.98 -0.03 0.62 16 17 C 0.45 9.89 7.29 -10.99 -0.08 9.81 16 18 O -0.56 -14.37 14.12 5.54 0.08 -14.29 16 19 N -0.59 -13.74 5.09 -10.96 -0.06 -13.79 16 20 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 21 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 22 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.47 13.96 55.50 0.77 -24.70 16 24 Si 0.88 19.02 27.74 -169.99 -4.71 14.30 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.50 6.91 -51.93 -0.36 0.14 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.79 5.85 -51.93 -0.30 1.49 16 32 H 0.02 0.31 7.99 -51.93 -0.42 -0.11 16 33 H 0.04 0.36 8.00 -51.93 -0.42 -0.05 16 34 H 0.08 0.80 6.58 -51.93 -0.34 0.46 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.64 6.95 -51.92 -0.36 0.28 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.41 2.29 8.47 -40.82 -0.35 1.95 16 40 H 0.14 0.83 7.67 -51.93 -0.40 0.43 16 41 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 1.21 6.71 -51.93 -0.35 0.86 16 43 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 44 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -34.49 381.84 -7.00 -41.49 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.46 Total: 9.16 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.24 Total: 6.15 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.58 Total: -53.12 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.17 Total: -20.98 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.75 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.49 -7.00 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752180694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.782 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds