Wall clock time and date at job start Tue Mar 31 2020 17:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46893 * 109.47087 * 2 1 4 4 C 1.46899 * 111.00503 * 76.02812 * 3 2 1 5 5 C 1.52998 * 109.47544 * 199.54687 * 4 3 2 6 6 C 1.52990 * 109.47468 * 174.88860 * 5 4 3 7 7 N 1.46501 * 109.47365 * 179.97438 * 6 5 4 8 8 C 1.34780 * 120.00264 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99891 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00030 * 179.97438 * 8 7 6 11 11 H 1.08994 * 115.55142 * 325.67009 * 10 8 7 12 12 C 1.53004 * 117.49703 * 180.02562 * 10 8 7 13 13 C 1.52997 * 117.49747 * 111.38134 * 10 8 7 14 14 F 1.39906 * 117.49714 * 214.97721 * 13 10 8 15 15 F 1.39896 * 117.49974 * 359.97438 * 13 10 8 16 16 C 1.46899 * 110.99775 * 199.97939 * 3 2 1 17 17 C 1.50698 * 109.47296 * 66.04663 * 16 3 2 18 18 O 1.21299 * 119.99828 * 359.97438 * 17 16 3 19 19 N 1.34774 * 120.00263 * 180.02562 * 17 16 3 20 20 C 1.37101 * 120.00029 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00241 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99926 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99849 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00287 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.46802 * 90.00106 * 24 22 20 26 26 H 1.48495 * 109.46997 * 210.00348 * 24 22 20 27 27 H 1.48506 * 109.46656 * 330.00341 * 24 22 20 28 28 H 1.08994 * 109.46836 * 174.87519 * 1 2 3 29 29 H 1.08998 * 109.46697 * 294.87655 * 1 2 3 30 30 H 1.08998 * 109.46849 * 54.87309 * 1 2 3 31 31 H 1.08994 * 109.46908 * 239.99415 * 2 1 3 32 32 H 1.09000 * 109.46635 * 119.99550 * 2 1 3 33 33 H 1.09000 * 109.47217 * 79.54062 * 4 3 2 34 34 H 1.09002 * 109.46996 * 319.54491 * 4 3 2 35 35 H 1.09006 * 109.47029 * 54.88827 * 5 4 3 36 36 H 1.09007 * 109.46876 * 294.89114 * 5 4 3 37 37 H 1.09001 * 109.47666 * 299.99843 * 6 5 4 38 38 H 1.09006 * 109.47022 * 59.99963 * 6 5 4 39 39 H 0.96996 * 119.99773 * 0.02562 * 7 6 5 40 40 H 1.08995 * 117.49868 * 359.97438 * 12 10 8 41 41 H 1.08999 * 117.49889 * 145.02449 * 12 10 8 42 42 H 1.09006 * 109.47205 * 186.04452 * 16 3 2 43 43 H 1.08994 * 109.47507 * 306.04826 * 16 3 2 44 44 H 0.96997 * 120.00019 * 359.97438 * 19 17 16 45 45 H 0.97001 * 120.00252 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9279 3.5158 1.2036 6 6 1.6586 4.1498 2.5696 7 7 1.7022 5.6091 2.4478 8 6 1.4925 6.3824 3.5317 9 8 1.2681 5.8701 4.6078 10 6 1.5379 7.8834 3.4065 11 1 2.2555 8.2735 2.6848 12 6 1.2923 8.7057 4.6732 13 6 0.2233 8.6468 3.5796 14 9 0.0341 9.7924 2.7991 15 9 -0.9289 7.8979 3.8413 16 6 3.4104 1.4516 -0.4686 17 6 3.4713 1.0498 -1.9197 18 8 2.4561 0.7380 -2.5059 19 7 4.6539 1.0358 -2.5661 20 6 4.7092 0.6707 -3.8864 21 1 3.8052 0.3940 -4.4085 22 6 5.9285 0.6558 -4.5526 23 7 5.9816 0.3054 -5.8180 24 14 7.4923 1.1338 -3.6494 25 1 8.0965 -0.0743 -3.0326 26 1 8.4541 1.7338 -4.6086 27 1 7.1690 2.1220 -2.5891 28 1 -0.3633 -1.0235 -0.0918 29 1 -0.3633 0.4323 0.9323 30 1 -0.3633 0.5913 -0.8405 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.7006 1.6561 1.9689 34 1 0.9320 1.6918 1.7709 35 1 1.1677 3.8437 0.4945 36 1 2.9121 3.8219 0.8486 37 1 0.6745 3.8438 2.9246 38 1 2.4188 3.8218 3.2786 39 1 1.8820 6.0188 1.5872 40 1 1.0975 8.1609 5.5969 41 1 1.8478 9.6369 4.7843 42 1 3.7828 2.4700 -0.3577 43 1 4.0258 0.7733 0.1223 44 1 5.4657 1.2847 -2.0973 45 1 6.8327 0.2954 -6.2832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752180694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:47 Heat of formation + Delta-G solvation = -158.160254 kcal Electronic energy + Delta-G solvation = -28046.539560 eV Core-core repulsion = 23542.142526 eV Total energy + Delta-G solvation = -4504.397034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.80385 -48.49465 -40.99003 -40.54616 -38.49859 -36.90622 -36.21172 -35.83980 -33.74394 -33.03473 -31.62285 -28.78319 -27.00884 -25.71840 -24.54740 -23.59979 -22.70145 -22.09917 -21.32778 -21.08003 -20.14761 -19.35119 -18.37031 -17.92121 -17.47324 -17.13472 -17.05333 -16.77582 -16.58685 -16.24251 -16.04964 -15.56413 -15.27198 -15.20163 -15.12546 -14.96536 -14.74171 -14.69334 -14.60945 -14.35452 -14.07795 -13.55148 -13.35484 -13.29613 -13.04813 -12.88878 -12.76940 -12.45536 -12.39899 -12.31014 -12.24236 -11.96698 -11.86147 -11.53337 -11.42075 -11.38040 -11.01021 -10.31814 -10.20139 -10.17829 -9.17711 -8.39219 -5.99683 1.01991 1.30699 1.36612 1.45419 1.86315 1.99842 2.02650 2.24438 2.30107 2.66289 3.13931 3.17139 3.21025 3.36244 3.48177 3.81604 3.91669 4.02810 4.15857 4.23524 4.26128 4.37745 4.45786 4.49904 4.54641 4.60268 4.61205 4.69093 4.74516 4.77416 4.80457 4.95293 5.14582 5.20452 5.26879 5.38862 5.40910 5.55874 5.93778 6.08992 6.26703 6.39285 6.62669 6.91599 7.06133 7.43241 8.01263 8.78532 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.002131 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.835812 B =13137.858229 C =14355.877849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.051 3.949 3 N -0.536 5.536 4 C 0.059 3.941 5 C -0.118 4.118 6 C 0.127 3.873 7 N -0.711 5.711 8 C 0.536 3.464 9 O -0.568 6.568 10 C -0.186 4.186 11 H 0.186 0.814 12 C -0.121 4.121 13 C 0.198 3.802 14 F -0.158 7.158 15 F -0.174 7.174 16 C 0.053 3.947 17 C 0.451 3.549 18 O -0.604 6.604 19 N -0.594 5.594 20 C -0.324 4.324 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.277 1.277 27 H -0.228 1.228 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.418 0.582 40 H 0.127 0.873 41 H 0.168 0.832 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.389 0.611 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 16.713 24.856 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.076 4.076 3 N -0.261 5.261 4 C -0.069 4.069 5 C -0.157 4.157 6 C 0.003 3.997 7 N -0.362 5.362 8 C 0.322 3.678 9 O -0.447 6.447 10 C -0.208 4.208 11 H 0.203 0.797 12 C -0.159 4.159 13 C 0.161 3.839 14 F -0.139 7.139 15 F -0.154 7.154 16 C -0.078 4.078 17 C 0.239 3.761 18 O -0.487 6.487 19 N -0.237 5.237 20 C -0.454 4.454 21 H 0.072 0.928 22 C -0.216 4.216 23 N -0.578 5.578 24 Si 0.784 3.216 25 H -0.184 1.184 26 H -0.202 1.202 27 H -0.152 1.152 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.255 0.745 40 H 0.145 0.855 41 H 0.185 0.815 42 H 0.139 0.861 43 H 0.094 0.906 44 H 0.224 0.776 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.575 16.341 24.681 29.952 hybrid contribution 1.032 -0.430 -0.617 1.277 sum -3.543 15.911 24.064 29.065 Atomic orbital electron populations 1.21627 0.94223 1.01453 1.01707 1.22075 0.97026 0.88399 1.00128 1.61516 1.18746 1.19472 1.26333 1.22087 1.02606 0.94055 0.88155 1.21672 1.03603 0.94685 0.95691 1.21276 1.02086 0.78564 0.97817 1.45871 1.71216 1.07321 1.11797 1.19651 0.76137 0.88118 0.83914 1.90724 1.49732 1.75626 1.28640 1.23855 0.99160 0.91767 1.06018 0.79688 1.24472 0.94636 1.03299 0.93468 1.20025 0.79839 0.83302 1.00757 1.93062 1.95901 1.48963 1.75926 1.93037 1.52458 1.75812 1.94112 1.21875 0.91196 1.03981 0.90798 1.20939 0.82908 0.81955 0.90308 1.90544 1.35442 1.52812 1.69928 1.42056 1.08633 1.62645 1.10322 1.18975 0.95669 1.44116 0.86600 0.92768 1.26119 1.02201 0.96791 0.96459 1.69810 1.28118 1.48504 1.11330 0.85372 0.77041 0.79974 0.79171 1.18378 1.20180 1.15162 0.92017 0.91320 0.94091 0.93077 0.93542 0.92696 0.89631 0.90977 0.90170 0.92039 0.90956 0.74545 0.85487 0.81465 0.86126 0.90633 0.77589 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.96 71.98 0.72 -2.76 16 2 C 0.05 1.51 5.18 86.31 0.45 1.96 16 3 N -0.54 -14.82 4.10 -900.82 -3.70 -18.51 16 4 C 0.06 1.08 4.81 86.30 0.41 1.49 16 5 C -0.12 -1.82 5.36 30.59 0.16 -1.65 16 6 C 0.13 1.87 5.67 86.38 0.49 2.36 16 7 N -0.71 -9.49 5.56 -463.06 -2.57 -12.06 16 8 C 0.54 8.97 7.25 87.66 0.64 9.61 16 9 O -0.57 -14.03 16.26 -3.03 -0.05 -14.08 16 10 C -0.19 -1.85 6.17 -11.54 -0.07 -1.92 16 11 H 0.19 0.49 8.14 -2.39 -0.02 0.47 16 12 C -0.12 -0.99 10.02 30.61 0.31 -0.69 16 13 C 0.20 2.77 5.20 30.61 0.16 2.93 16 14 F -0.16 -2.35 17.60 44.97 0.79 -1.55 16 15 F -0.17 -3.64 17.13 44.97 0.77 -2.87 16 16 C 0.05 1.51 5.27 85.56 0.45 1.97 16 17 C 0.45 19.71 7.29 87.66 0.64 20.35 16 18 O -0.60 -32.56 14.12 -3.09 -0.04 -32.61 16 19 N -0.59 -27.30 5.09 -306.98 -1.56 -28.87 16 20 C -0.32 -18.74 10.16 84.04 0.85 -17.88 16 21 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 22 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 23 N -0.94 -56.18 13.96 21.66 0.30 -55.88 16 24 Si 0.96 38.00 27.74 68.60 1.90 39.90 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 26 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 27 H -0.23 -7.42 6.52 99.48 0.65 -6.77 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.44 6.91 -2.39 -0.02 1.42 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.96 5.85 -2.39 -0.01 1.95 16 32 H 0.05 1.13 7.99 -2.39 -0.02 1.11 16 33 H 0.05 0.85 8.00 -2.39 -0.02 0.83 16 34 H 0.09 1.48 6.58 -2.39 -0.02 1.46 16 35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.08 1.10 6.95 -2.38 -0.02 1.09 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.42 3.51 8.47 -92.71 -0.79 2.72 16 40 H 0.13 1.35 7.67 -2.39 -0.02 1.33 16 41 H 0.17 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.12 2.74 6.71 -2.38 -0.02 2.72 16 43 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 44 H 0.39 14.65 5.76 -92.71 -0.53 14.11 16 45 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -82.91 381.84 1.18 -81.73 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.34 Total: 29.54 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 5.67 Total: 15.26 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -7.53 Total: -115.32 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.09 Total: -46.69 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 1.56 Total: -4.42 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.90 Total: 39.90 kcal Total: -82.91 1.18 -81.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752180694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.430 kcal (2) G-P(sol) polarization free energy of solvation -82.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds