Wall clock time and date at job start Tue Mar 31 2020 18:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99487 * 2 1 4 4 C 1.52993 * 109.47538 * 90.00323 * 3 2 1 5 5 C 1.52995 * 109.47774 * 179.97438 * 4 3 2 6 6 N 1.46893 * 109.47292 * 180.02562 * 5 4 3 7 7 C 1.46904 * 110.99904 * 179.97438 * 6 5 4 8 8 C 1.50708 * 109.47016 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99534 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99602 * 179.97438 * 10 8 7 12 12 H 1.08005 * 120.00076 * 0.02562 * 11 10 8 13 13 C 1.38950 * 119.99958 * 179.97438 * 11 10 8 14 14 N 1.31415 * 120.00104 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00026 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46867 * 90.00173 * 15 13 11 17 17 H 1.48503 * 109.47245 * 210.00448 * 15 13 11 18 18 H 1.48497 * 109.47115 * 330.00439 * 15 13 11 19 19 C 1.34777 * 120.00232 * 179.97438 * 2 1 3 20 20 O 1.21276 * 119.99674 * 185.15191 * 19 2 1 21 21 C 1.50699 * 120.00130 * 5.15521 * 19 2 1 22 22 C 1.53005 * 115.54867 * 66.06472 * 21 19 2 23 23 F 1.39903 * 109.46683 * 62.91971 * 22 21 19 24 24 F 1.39900 * 109.46937 * 182.91345 * 22 21 19 25 25 C 1.52999 * 117.49866 * 280.40200 * 21 19 2 26 26 C 1.52996 * 117.49995 * 211.73820 * 21 19 2 27 27 H 1.08995 * 109.47216 * 85.87822 * 1 2 3 28 28 H 1.09008 * 109.47000 * 205.87026 * 1 2 3 29 29 H 1.08996 * 109.47440 * 325.87152 * 1 2 3 30 30 H 1.08996 * 109.47659 * 329.99823 * 3 2 1 31 31 H 1.09004 * 109.46735 * 210.00483 * 3 2 1 32 32 H 1.09004 * 109.47239 * 299.99852 * 4 3 2 33 33 H 1.09005 * 109.46855 * 59.99017 * 4 3 2 34 34 H 1.08999 * 109.46886 * 299.99814 * 5 4 3 35 35 H 1.08999 * 109.47017 * 59.99725 * 5 4 3 36 36 H 1.00902 * 111.00694 * 56.04377 * 6 5 4 37 37 H 1.09002 * 109.47179 * 299.99525 * 7 6 5 38 38 H 1.08996 * 109.47304 * 59.99821 * 7 6 5 39 39 H 0.97003 * 120.00417 * 359.97438 * 10 8 7 40 40 H 0.96996 * 120.00197 * 179.97438 * 14 13 11 41 41 H 1.08989 * 109.47830 * 302.92058 * 22 21 19 42 42 H 1.08999 * 117.49871 * 359.97438 * 25 21 19 43 43 H 1.09003 * 117.49901 * 145.02045 * 25 21 19 44 44 H 1.09001 * 117.49763 * 214.97786 * 26 21 19 45 45 H 1.08997 * 117.49887 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4424 5 6 3.2179 3.0352 1.4425 6 7 3.4632 3.4589 2.8274 7 6 4.1985 4.7301 2.8666 8 6 4.4306 5.1322 4.3004 9 8 4.0240 4.4287 5.2009 10 7 5.0909 6.2729 4.5818 11 6 5.3016 6.6389 5.8861 12 1 4.9389 6.0130 6.6880 13 6 5.9828 7.8147 6.1764 14 7 6.4246 8.5761 5.2007 15 14 6.2706 8.3131 7.9535 16 1 7.5582 7.7432 8.4251 17 1 6.3196 9.7941 8.0506 18 1 5.1627 7.7981 8.7976 19 6 2.1389 -1.1672 0.0005 20 8 3.3480 -1.1691 0.0948 21 6 1.3901 -2.4697 -0.1162 22 6 0.6763 -2.7034 -1.4492 23 9 1.6205 -2.7597 -2.4800 24 9 -0.0281 -3.9110 -1.3956 25 6 0.7234 -3.0170 1.1475 26 6 1.9810 -3.6903 0.5923 27 1 -0.3633 0.0739 -1.0250 28 1 -0.3633 -0.9247 0.4484 29 1 -0.3634 0.8506 0.5765 30 1 1.6083 2.0284 -0.5138 31 1 3.1498 1.1385 -0.5139 32 1 1.5000 1.8408 1.9563 33 1 3.0415 0.9508 1.9562 34 1 4.1703 2.9045 0.9287 35 1 2.6291 3.7950 0.9285 36 1 3.9521 2.7428 3.3435 37 1 5.1575 4.6109 2.3625 38 1 3.6167 5.5020 2.3628 39 1 5.4170 6.8350 3.8616 40 1 6.8998 9.3971 5.4033 41 1 -0.0188 -1.8853 -1.6375 42 1 0.8268 -2.4351 2.0634 43 1 -0.2234 -3.5439 1.0292 44 1 1.8610 -4.6598 0.1089 45 1 2.9117 -3.5512 1.1424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754370561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:12 Heat of formation + Delta-G solvation = -144.639167 kcal Electronic energy + Delta-G solvation = -28048.952763 eV Core-core repulsion = 23545.142047 eV Total energy + Delta-G solvation = -4503.810716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.52988 -47.51854 -40.71639 -38.31272 -37.37893 -36.49789 -35.50606 -33.87478 -31.94701 -31.16775 -28.40111 -27.67051 -26.88168 -25.23349 -23.76993 -23.17940 -22.39694 -21.48142 -19.65263 -19.20028 -18.22970 -17.90140 -17.86726 -17.64082 -16.74509 -16.34221 -16.02479 -15.69817 -15.52497 -15.01941 -14.62189 -14.35474 -14.33924 -14.18802 -14.12753 -13.86576 -13.58737 -13.51178 -13.37331 -13.22816 -12.87301 -12.67345 -12.27957 -12.14248 -12.11431 -11.93208 -11.67773 -11.47990 -11.38193 -11.22712 -11.05113 -10.98428 -10.79449 -10.38810 -10.24543 -10.20851 -9.50246 -9.14763 -8.45433 -8.05090 -7.94982 -6.40899 -3.81717 1.96180 2.36999 2.74576 3.18475 3.23386 3.26923 3.33060 3.58210 3.70820 3.88757 3.92063 4.05429 4.10969 4.33488 4.45166 4.57636 4.59804 4.73582 4.82631 4.95319 5.00415 5.08817 5.10413 5.16941 5.19591 5.26193 5.31676 5.32298 5.49744 5.51737 5.65148 5.80819 5.91956 5.98829 6.04875 6.19682 6.28673 6.84453 7.23170 7.55974 7.66289 7.67387 8.07287 8.62296 9.18697 9.55282 10.06860 10.76878 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.033364 B = 0.001633 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.038987 B =17140.109662 C =17417.603875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.610 5.610 3 C 0.117 3.883 4 C -0.131 4.131 5 C 0.062 3.938 6 N -0.670 5.670 7 C 0.050 3.950 8 C 0.441 3.559 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.556 3.444 20 O -0.514 6.514 21 C -0.236 4.236 22 C 0.308 3.692 23 F -0.194 7.194 24 F -0.196 7.196 25 C -0.139 4.139 26 C -0.125 4.125 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.349 0.651 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.683 -20.602 -16.718 30.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.343 5.343 3 C -0.005 4.005 4 C -0.170 4.170 5 C -0.068 4.068 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.342 3.658 20 O -0.389 6.389 21 C -0.240 4.240 22 C 0.254 3.746 23 F -0.176 7.176 24 F -0.177 7.177 25 C -0.176 4.176 26 C -0.162 4.162 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.807 -20.599 -16.008 29.997 hybrid contribution 1.203 0.455 -0.036 1.287 sum -13.603 -20.145 -16.044 29.125 Atomic orbital electron populations 1.21992 0.79267 1.04243 1.02033 1.47783 1.07186 1.05904 1.73458 1.21536 0.97698 0.83583 0.97710 1.21879 1.01820 0.97162 0.96158 1.21847 0.98426 0.96006 0.90515 1.60078 1.53055 1.05370 1.11715 1.21673 0.96741 0.93007 0.96800 1.19824 0.83968 0.83817 0.89769 1.90518 1.54721 1.53954 1.47597 1.41867 1.49437 1.19990 1.08784 1.19709 1.33479 1.05686 0.84005 0.87927 1.25270 0.96922 0.96040 0.99779 1.69613 1.38441 1.14365 1.31924 0.85847 0.78889 0.77474 0.82013 1.20432 1.20921 1.19412 1.18967 0.86997 0.83251 0.76601 1.90750 1.13614 1.86538 1.47955 1.22521 1.08600 0.97461 0.95429 1.20985 0.84845 0.85087 0.83701 1.93040 1.67124 1.96819 1.60572 1.92993 1.79024 1.49141 1.96578 1.23218 0.98594 1.01925 0.93826 1.23106 0.98569 0.94143 1.00411 0.92385 0.90514 0.89920 0.89898 0.89712 0.90724 0.91474 0.95353 0.91033 0.83149 0.93845 0.89606 0.77443 0.91884 0.86449 0.86937 0.86599 0.86985 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 9.15 59.85 0.55 0.84 16 2 N -0.61 -4.86 2.87 -181.58 -0.52 -5.38 16 3 C 0.12 1.01 5.39 -4.05 -0.02 0.99 16 4 C -0.13 -1.40 5.80 -26.74 -0.16 -1.55 16 5 C 0.06 0.76 5.68 -3.83 -0.02 0.74 16 6 N -0.67 -11.10 6.13 -115.06 -0.70 -11.80 16 7 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 8 C 0.44 10.63 7.82 -10.98 -0.09 10.54 16 9 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 10 N -0.56 -14.52 5.29 -10.96 -0.06 -14.58 16 11 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 12 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 15 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.56 5.68 6.87 -10.99 -0.08 5.60 16 20 O -0.51 -7.42 16.34 5.56 0.09 -7.33 16 21 C -0.24 -1.77 1.13 -155.66 -0.18 -1.95 16 22 C 0.31 2.06 5.13 37.16 0.19 2.25 16 23 F -0.19 -1.89 17.28 2.25 0.04 -1.85 16 24 F -0.20 -1.38 15.91 2.25 0.04 -1.34 16 25 C -0.14 -0.73 8.40 -26.69 -0.22 -0.96 16 26 C -0.13 -0.90 9.51 -26.69 -0.25 -1.15 16 27 H 0.06 0.15 7.46 -51.93 -0.39 -0.24 16 28 H 0.08 0.24 5.73 -51.92 -0.30 -0.06 16 29 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 30 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 31 H 0.08 0.86 7.50 -51.93 -0.39 0.47 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.35 6.12 8.43 -39.29 -0.33 5.79 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.12 0.44 6.21 -51.94 -0.32 0.12 16 42 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.12 0.42 7.69 -51.93 -0.40 0.02 16 44 H 0.11 0.70 7.87 -51.93 -0.41 0.29 16 45 H 0.12 0.95 8.01 -51.93 -0.42 0.54 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -35.01 385.19 -6.66 -41.67 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.58 Total: 10.60 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.55 Total: 8.12 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.56 Total: -55.77 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.18 Total: -23.42 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.07 Total: -3.19 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.01 -6.66 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754370561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.974 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds