Wall clock time and date at job start Tue Mar 31 2020 17:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48510 * 109.47031 * 274.88001 * 3 2 1 5 5 H 1.48500 * 109.47497 * 34.88150 * 3 2 1 6 6 H 1.48503 * 109.47557 * 154.88284 * 3 2 1 7 7 C 1.38813 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99488 * 22.80287 * 7 2 1 9 9 N 1.36936 * 120.00248 * 202.80074 * 7 2 1 10 10 C 1.47421 * 125.65016 * 49.19421 * 9 7 2 11 11 C 1.54907 * 104.83221 * 204.17430 * 10 9 7 12 12 C 1.55147 * 101.58405 * 322.99048 * 11 10 9 13 13 C 1.47019 * 125.64600 * 229.24622 * 9 7 2 14 14 H 1.09005 * 110.01226 * 59.40840 * 13 9 7 15 15 C 1.52994 * 109.88507 * 298.31124 * 13 9 7 16 16 H 1.09006 * 109.70171 * 191.47181 * 15 13 9 17 17 C 1.53623 * 109.66371 * 312.06566 * 15 13 9 18 18 C 1.53043 * 109.24167 * 174.54815 * 17 15 13 19 19 C 1.53046 * 109.53780 * 298.51159 * 18 17 15 20 20 C 1.53191 * 109.31219 * 61.36512 * 19 18 17 21 21 N 1.46925 * 109.58795 * 71.11959 * 15 13 9 22 22 C 1.34776 * 120.63068 * 6.62668 * 21 15 13 23 23 O 1.21280 * 119.99845 * 4.78104 * 22 21 15 24 24 C 1.50697 * 120.00492 * 184.78071 * 22 21 15 25 25 C 1.50702 * 109.47472 * 182.54045 * 24 22 21 26 26 C 1.41381 * 128.00295 * 93.77681 * 25 24 22 27 27 N 1.30174 * 106.39318 * 179.97438 * 26 25 24 28 28 O 1.20921 * 111.60542 * 359.97438 * 27 26 25 29 29 C 1.34038 * 111.56911 * 0.02562 * 28 27 26 30 30 H 0.97002 * 120.00169 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36975 * 85.33469 * 10 9 7 32 32 H 1.09007 * 110.46041 * 323.05873 * 10 9 7 33 33 H 1.09000 * 111.00277 * 204.91417 * 11 10 9 34 34 H 1.09008 * 111.03629 * 81.08441 * 11 10 9 35 35 H 1.09005 * 110.72036 * 277.13910 * 12 11 10 36 36 H 1.09000 * 110.72572 * 153.86411 * 12 11 10 37 37 H 1.08997 * 109.63306 * 54.55846 * 17 15 13 38 38 H 1.08996 * 109.43093 * 294.41537 * 17 15 13 39 39 H 1.08996 * 109.46079 * 178.48912 * 18 17 15 40 40 H 1.09008 * 109.46306 * 58.52966 * 18 17 15 41 41 H 1.08995 * 109.49664 * 301.41491 * 19 18 17 42 42 H 1.09007 * 109.49514 * 181.31384 * 19 18 17 43 43 H 1.08997 * 109.58955 * 185.57429 * 20 19 18 44 44 H 1.09004 * 109.70618 * 65.22153 * 20 19 18 45 45 H 1.09002 * 109.46681 * 62.54191 * 24 22 21 46 46 H 1.09000 * 109.46914 * 302.54518 * 24 22 21 47 47 H 1.08001 * 126.80204 * 359.93952 * 26 25 24 48 48 H 1.07995 * 126.78054 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3944 2.1060 -1.3951 5 1 1.5030 2.6207 0.8007 6 1 3.5955 1.4127 0.5943 7 6 2.0103 -1.2021 0.0005 8 1 1.5336 -2.1011 -0.3616 9 7 3.2994 -1.2482 0.4601 10 6 3.7775 -0.6849 1.7358 11 6 5.2898 -0.4318 1.5156 12 6 5.6858 -1.6513 0.6421 13 6 4.4361 -1.8668 -0.2375 14 1 4.5803 -1.3933 -1.2087 15 6 4.1813 -3.3641 -0.4216 16 1 5.0974 -3.8551 -0.7501 17 6 3.7125 -3.9760 0.9072 18 6 3.3307 -5.4407 0.6812 19 6 2.1753 -5.5199 -0.3193 20 6 2.6228 -4.9247 -1.6581 21 7 3.1278 -3.5647 -1.4258 22 6 2.6377 -2.5216 -2.1247 23 8 3.1252 -1.4192 -1.9906 24 6 1.4841 -2.7251 -3.0728 25 6 1.1715 -1.4260 -3.7697 26 6 1.6498 -0.9721 -5.0204 27 7 1.1147 0.1985 -5.2154 28 8 0.3990 0.5198 -4.2953 29 6 0.3666 -0.4235 -3.3435 30 1 -0.4850 0.8401 -0.0004 31 1 3.6263 -1.3982 2.5459 32 1 3.2641 0.2514 1.9551 33 1 5.8290 -0.4381 2.4628 34 1 5.4561 0.5030 0.9800 35 1 5.8750 -2.5261 1.2642 36 1 6.5550 -1.4190 0.0268 37 1 2.8467 -3.4273 1.2777 38 1 4.5197 -3.9189 1.6374 39 1 3.0230 -5.8858 1.6273 40 1 4.1901 -5.9834 0.2872 41 1 1.3240 -4.9567 0.0627 42 1 1.8885 -6.5618 -0.4621 43 1 1.7757 -4.8880 -2.3431 44 1 3.4136 -5.5397 -2.0877 45 1 0.6091 -3.0575 -2.5142 46 1 1.7509 -3.4795 -3.8129 47 1 2.3256 -1.4930 -5.6824 48 1 -0.1910 -0.3906 -2.4192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025261908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:22 Heat of formation + Delta-G solvation = 100.163570 kcal Electronic energy + Delta-G solvation = -32388.393633 eV Core-core repulsion = 28449.427891 eV Total energy + Delta-G solvation = -3938.965743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.26013 -40.22683 -37.21632 -36.58939 -33.95722 -32.49004 -32.29511 -31.57049 -31.04768 -29.72894 -28.24551 -27.27078 -24.59030 -23.94662 -22.81940 -22.22335 -21.37360 -20.43372 -20.24149 -19.37114 -18.22737 -17.17506 -17.06448 -16.74633 -16.18018 -15.47536 -15.23053 -14.66660 -14.39719 -14.25851 -14.02555 -13.65784 -13.29126 -13.22630 -12.99770 -12.86226 -12.50465 -12.41646 -12.19945 -12.12804 -12.03351 -11.40138 -11.12645 -11.05963 -11.00547 -10.80458 -10.63970 -10.56954 -10.48213 -10.40286 -10.22009 -10.14517 -9.83061 -9.75023 -9.73945 -9.35989 -8.75168 -8.28024 -7.90668 -7.70516 -6.22108 -5.88080 -3.32249 2.20440 2.80912 3.52409 3.54933 3.65868 3.71818 3.80142 3.99382 4.73352 4.83327 5.02544 5.13305 5.17796 5.21676 5.29691 5.35957 5.40801 5.47933 5.60720 5.62843 5.66651 5.68124 5.71107 5.81399 5.85435 5.92693 5.96743 6.06264 6.11964 6.20997 6.28324 6.30914 6.34316 6.42060 6.43943 6.47988 6.51849 6.59174 6.62992 6.73516 6.90806 7.01734 7.08700 7.22228 7.56043 8.20994 8.25736 8.47934 8.83140 9.05154 9.28421 9.81937 10.52598 11.23925 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.007401 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.354970 B = 3782.412698 C = 5243.113744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.043 3.957 3 Si 0.869 3.131 4 H -0.293 1.293 5 H -0.308 1.308 6 H -0.256 1.256 7 C -0.196 4.196 8 H 0.071 0.929 9 N -0.586 5.586 10 C 0.130 3.870 11 C -0.134 4.134 12 C -0.133 4.133 13 C 0.127 3.873 14 H 0.102 0.898 15 C 0.150 3.850 16 H 0.049 0.951 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.133 4.133 20 C 0.114 3.886 21 N -0.612 5.612 22 C 0.519 3.481 23 O -0.463 6.463 24 C -0.055 4.055 25 C -0.190 4.190 26 C -0.004 4.004 27 N -0.384 5.384 28 O 0.081 5.919 29 C -0.012 4.012 30 H 0.259 0.741 31 H 0.019 0.981 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.180 0.820 48 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -11.502 -2.506 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.156 4.156 3 Si 0.699 3.301 4 H -0.220 1.220 5 H -0.236 1.236 6 H -0.180 1.180 7 C -0.324 4.324 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.005 3.995 11 C -0.172 4.172 12 C -0.172 4.172 13 C 0.022 3.978 14 H 0.119 0.881 15 C 0.045 3.955 16 H 0.067 0.933 17 C -0.163 4.163 18 C -0.154 4.154 19 C -0.172 4.172 20 C -0.010 4.010 21 N -0.349 5.349 22 C 0.306 3.694 23 O -0.335 6.335 24 C -0.095 4.095 25 C -0.195 4.195 26 C -0.183 4.183 27 N -0.091 5.091 28 O 0.020 5.980 29 C -0.093 4.093 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.104 0.896 47 H 0.197 0.803 48 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.355 -9.828 -3.462 11.715 hybrid contribution 0.530 0.083 0.735 0.910 sum 5.886 -9.745 -2.727 11.706 Atomic orbital electron populations 1.69850 1.05877 1.26412 1.53690 1.25548 0.94842 0.97637 0.97528 0.87002 0.81460 0.84300 0.77356 1.22017 1.23635 1.18049 1.18189 0.84242 0.92784 1.37196 0.91196 1.44483 1.04460 1.67094 1.15163 1.21822 0.91444 0.96489 0.89783 1.22740 0.97877 0.98099 0.98522 1.22719 0.98215 0.97782 0.98468 1.22150 0.87245 0.90054 0.98373 0.88149 1.21793 0.87691 0.99082 0.86905 0.93293 1.21979 1.02765 0.94355 0.97168 1.21499 0.97605 0.97728 0.98540 1.21883 0.99242 1.00119 0.95927 1.21541 0.98509 0.83966 0.97014 1.47798 1.40516 1.06270 1.40297 1.19772 0.84321 0.84138 0.81134 1.90637 1.56952 1.23880 1.62019 1.19858 0.99103 0.93191 0.97371 1.20613 1.02948 0.99764 0.96159 1.24759 1.02544 0.93217 0.97766 1.73758 1.08723 1.15978 1.10659 1.84746 1.50231 1.40451 1.22544 1.26524 1.00890 0.86842 0.95032 0.93144 0.96312 0.94074 0.92609 0.92002 0.92363 0.92590 0.89055 0.92543 0.92685 0.93030 0.91017 0.91958 0.90484 0.92647 0.88280 0.89583 0.80302 0.75376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.04 12.75 55.49 0.71 -24.33 16 2 C 0.04 1.15 5.38 -17.43 -0.09 1.06 16 3 Si 0.87 22.76 26.74 -169.99 -4.55 18.21 16 4 H -0.29 -8.23 7.11 56.52 0.40 -7.83 16 5 H -0.31 -8.28 7.11 56.52 0.40 -7.88 16 6 H -0.26 -6.45 4.42 56.52 0.25 -6.20 16 7 C -0.20 -4.87 5.93 -15.06 -0.09 -4.96 16 8 H 0.07 1.82 5.81 -52.48 -0.31 1.52 16 9 N -0.59 -13.04 1.13 -162.57 -0.18 -13.23 16 10 C 0.13 2.74 5.98 -2.53 -0.02 2.72 16 11 C -0.13 -2.42 6.92 -24.59 -0.17 -2.59 16 12 C -0.13 -2.23 6.33 -24.90 -0.16 -2.38 16 13 C 0.13 2.48 2.31 -66.95 -0.15 2.32 16 14 H 0.10 2.27 5.28 -55.31 -0.29 1.98 16 15 C 0.15 2.48 2.59 -67.38 -0.17 2.31 16 16 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 17 C -0.12 -1.95 4.97 -26.39 -0.13 -2.08 16 18 C -0.12 -1.47 5.88 -26.69 -0.16 -1.63 16 19 C -0.13 -1.62 6.08 -26.61 -0.16 -1.79 16 20 C 0.11 1.39 6.33 -3.71 -0.02 1.37 16 21 N -0.61 -9.88 2.57 -164.97 -0.42 -10.30 16 22 C 0.52 9.63 4.66 -10.99 -0.05 9.58 16 23 O -0.46 -10.47 9.35 5.56 0.05 -10.41 16 24 C -0.05 -0.87 4.66 -29.04 -0.14 -1.00 16 25 C -0.19 -3.47 4.82 -104.42 -0.50 -3.97 16 26 C 0.00 -0.06 12.16 -17.06 -0.21 -0.27 16 27 N -0.38 -7.59 12.07 30.35 0.37 -7.23 16 28 O 0.08 1.68 11.20 17.18 0.19 1.87 16 29 C -0.01 -0.23 12.26 29.74 0.36 0.13 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.96 5.16 -51.93 -0.27 0.69 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.21 7.29 -51.92 -0.38 0.83 16 35 H 0.06 0.88 6.49 -51.93 -0.34 0.54 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.78 6.76 -51.93 -0.35 1.43 16 38 H 0.06 0.84 6.84 -51.93 -0.36 0.49 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.08 0.83 5.92 -51.93 -0.31 0.53 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 1.55 8.00 -51.93 -0.42 1.14 16 46 H 0.09 1.05 7.60 -51.93 -0.39 0.66 16 47 H 0.18 2.48 8.06 -52.49 -0.42 2.05 16 48 H 0.23 4.98 6.77 -52.49 -0.36 4.62 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -29.84 353.28 -7.65 -37.48 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.27 Total: 3.79 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.86 Total: -1.17 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.47 Total: -55.09 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.24 Total: -8.55 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.55 Total: 18.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.84 -7.65 -37.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025261908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.648 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds