Wall clock time and date at job start Tue Mar 31 2020 17:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46754 * 167.93711 * 3 2 1 5 5 C 1.53041 * 109.45810 * 184.99554 * 4 3 2 6 6 C 1.53189 * 109.30957 * 178.61458 * 5 4 3 7 7 N 1.46923 * 108.77695 * 54.64368 * 6 5 4 8 8 C 1.34772 * 120.63531 * 126.36615 * 7 6 5 9 9 O 1.21352 * 120.00012 * 4.84587 * 8 7 6 10 10 C 1.49449 * 120.00187 * 185.11880 * 8 7 6 11 11 O 1.21350 * 120.00093 * 274.60137 * 10 8 7 12 12 N 1.34778 * 119.99833 * 94.60007 * 10 8 7 13 13 C 1.46922 * 120.63288 * 5.15579 * 12 10 8 14 14 C 1.53186 * 108.77690 * 126.36464 * 13 12 10 15 15 C 1.53043 * 109.31137 * 54.63688 * 14 13 12 16 16 C 1.53040 * 109.53799 * 298.63089 * 15 14 13 17 17 H 1.08996 * 109.49844 * 301.38337 * 16 15 14 18 18 C 1.50698 * 109.50079 * 181.31714 * 16 15 14 19 19 H 1.08003 * 119.99906 * 359.97438 * 18 16 15 20 20 C 1.37872 * 120.00399 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99858 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 120.00118 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46904 * 90.00241 * 22 20 18 24 24 H 1.48498 * 109.46981 * 210.00031 * 22 20 18 25 25 H 1.48494 * 109.47191 * 329.99973 * 22 20 18 26 26 C 1.46930 * 120.62672 * 184.87132 * 12 10 8 27 27 C 1.46926 * 118.73403 * 306.63876 * 7 6 5 28 28 C 1.52761 * 109.00819 * 53.31100 * 27 7 6 29 29 H 1.08999 * 109.47299 * 47.94418 * 3 2 1 30 30 H 1.09000 * 109.46818 * 287.93528 * 3 2 1 31 31 H 1.08996 * 109.45920 * 304.97330 * 4 3 2 32 32 H 1.09009 * 109.49305 * 58.66619 * 5 4 3 33 33 H 1.08992 * 109.50359 * 298.56873 * 5 4 3 34 34 H 1.09001 * 109.59396 * 294.85082 * 6 5 4 35 35 H 1.09003 * 109.58438 * 174.43103 * 6 5 4 36 36 H 1.08996 * 109.58938 * 246.15630 * 13 12 10 37 37 H 1.09001 * 109.58529 * 6.43767 * 13 12 10 38 38 H 1.09004 * 109.50295 * 174.58780 * 14 13 12 39 39 H 1.09003 * 109.50236 * 294.68413 * 14 13 12 40 40 H 1.08997 * 109.46098 * 58.65244 * 15 14 13 41 41 H 1.09003 * 109.45967 * 178.62730 * 15 14 13 42 42 H 0.96999 * 120.00156 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.58814 * 353.42341 * 26 12 10 44 44 H 1.09001 * 109.58250 * 113.84630 * 26 12 10 45 45 H 1.09005 * 109.58935 * 173.14712 * 27 7 6 46 46 H 1.09002 * 109.58867 * 293.56602 * 27 7 6 47 47 H 1.09007 * 109.55930 * 185.55074 * 28 27 7 48 48 H 1.08998 * 109.38678 * 65.51408 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4116 -0.3015 5 6 4.6426 1.3876 -0.4247 6 6 5.1459 2.7949 -0.7607 7 7 4.6369 3.7328 0.2493 8 6 5.4795 4.5413 0.9221 9 8 6.6585 4.5627 0.6354 10 6 4.9630 5.4072 2.0253 11 8 4.4898 6.4954 1.7716 12 7 5.0228 4.9793 3.3020 13 6 5.6934 3.7158 3.6374 14 6 6.7376 3.9855 4.7253 15 6 6.0635 4.6743 5.9142 16 6 5.4775 6.0145 5.4644 17 1 6.2719 6.6413 5.0592 18 6 4.8423 6.7067 6.6427 19 1 4.8546 6.2377 7.6155 20 6 4.2445 7.9382 6.4787 21 7 4.2281 8.5087 5.2938 22 14 3.4565 8.7958 7.9392 23 1 4.4649 9.6523 8.6135 24 1 2.3272 9.6376 7.4687 25 1 2.9508 7.7794 8.8964 26 6 4.4239 5.7706 4.3855 27 6 3.1925 3.7682 0.5161 28 6 2.7104 2.3539 0.8338 29 1 2.9717 -0.6875 -0.7630 30 1 2.9714 -0.3156 0.9777 31 1 2.6828 1.7622 -1.2376 32 1 4.9326 0.6984 -1.2179 33 1 5.0788 1.0609 0.5192 34 1 4.7835 3.0871 -1.7463 35 1 6.2358 2.8048 -0.7522 36 1 4.9593 2.9989 4.0052 37 1 6.1827 3.3149 2.7497 38 1 7.1751 3.0420 5.0517 39 1 7.5201 4.6312 4.3266 40 1 5.2648 4.0389 6.2969 41 1 6.7995 4.8454 6.6998 42 1 3.8078 9.3753 5.1785 43 1 4.0779 6.7263 3.9918 44 1 3.5841 5.2247 4.8155 45 1 2.9939 4.4202 1.3667 46 1 2.6675 4.1414 -0.3633 47 1 1.6252 2.3527 0.9363 48 1 3.1644 2.0177 1.7660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118446708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:53 Heat of formation + Delta-G solvation = -53.529327 kcal Electronic energy + Delta-G solvation = -29874.620687 eV Core-core repulsion = 25928.990321 eV Total energy + Delta-G solvation = -3945.630367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84118 -39.16597 -38.02480 -36.78947 -36.67386 -34.20311 -33.44572 -31.90476 -31.54320 -29.94171 -29.53063 -26.27607 -25.10709 -24.34636 -23.74758 -22.36803 -21.88598 -20.65230 -19.47621 -18.43302 -17.86598 -17.57878 -16.72546 -16.22943 -16.06650 -15.47647 -15.06963 -14.92984 -14.68726 -14.54437 -14.30342 -14.09039 -13.87757 -13.78180 -13.42165 -13.17850 -12.99778 -12.88114 -12.74085 -12.68690 -12.53245 -12.22149 -11.99226 -11.95939 -11.61369 -11.35909 -11.07454 -11.05256 -10.96089 -10.94391 -10.85945 -10.53757 -10.43954 -10.28658 -9.97659 -9.29064 -9.18619 -8.93788 -8.88400 -8.48635 -7.94724 -6.03644 -4.12956 2.30657 2.40123 2.46922 2.48005 2.97174 3.29066 3.36582 3.38302 3.57247 3.66277 4.21051 4.23974 4.37007 4.40906 4.56343 4.71280 4.85994 4.94790 5.00567 5.08980 5.17541 5.22215 5.26825 5.35390 5.42365 5.46759 5.48170 5.54879 5.59243 5.62009 5.68803 5.88803 5.94871 6.12305 6.25339 6.25772 6.52319 6.58954 6.76855 6.90873 6.97701 7.05735 7.09540 7.24051 7.54792 7.79676 7.87529 7.89595 8.03689 8.29846 8.47879 8.91312 9.53154 11.01601 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.003245 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.579373 B = 8626.874111 C = 9254.883480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.205 3.795 3 C -0.023 4.023 4 C -0.085 4.085 5 C -0.127 4.127 6 C 0.110 3.890 7 N -0.601 5.601 8 C 0.521 3.479 9 O -0.519 6.519 10 C 0.505 3.495 11 O -0.510 6.510 12 N -0.586 5.586 13 C 0.109 3.891 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.038 3.962 17 H 0.031 0.969 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.111 3.889 27 C 0.107 3.893 28 C -0.135 4.135 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.264 0.736 43 H 0.125 0.875 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 -18.838 -11.768 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.113 4.113 3 C -0.063 4.063 4 C -0.105 4.105 5 C -0.165 4.165 6 C -0.013 4.013 7 N -0.338 5.338 8 C 0.304 3.696 9 O -0.393 6.393 10 C 0.286 3.714 11 O -0.385 6.385 12 N -0.320 5.320 13 C -0.015 4.015 14 C -0.171 4.171 15 C -0.148 4.148 16 C 0.019 3.981 17 H 0.049 0.951 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.009 4.009 27 C -0.015 4.015 28 C -0.173 4.173 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.143 0.857 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.897 -18.048 -12.137 21.768 hybrid contribution -0.035 0.506 0.758 0.912 sum -0.931 -17.543 -11.379 20.931 Atomic orbital electron populations 1.81274 1.13119 1.08263 1.08714 1.29208 0.95351 0.93385 0.93337 1.19420 0.81647 0.99414 1.05785 1.21179 0.96358 0.92908 1.00023 1.21972 0.94048 0.97023 1.03473 1.21643 1.01218 0.87523 0.90869 1.48114 1.07707 1.38258 1.39671 1.20798 0.86243 0.79397 0.83136 1.90757 1.15947 1.65142 1.67449 1.19976 0.80404 0.87204 0.83819 1.90844 1.44692 1.20293 1.82658 1.48591 1.54256 1.22738 1.06408 1.21687 0.95351 0.85754 0.98668 1.21931 0.97853 1.00534 0.96816 1.21633 0.98996 0.98509 0.95657 1.18907 0.94305 0.91230 0.93632 0.95116 1.21057 1.37283 1.03051 0.94546 0.92249 1.25062 0.95980 0.97204 0.95796 1.69875 1.43643 1.16676 1.21562 0.86579 0.79029 0.79621 0.82698 1.20659 1.21177 1.19890 1.22379 0.96144 0.96501 0.85842 1.21684 0.79590 0.97515 1.02743 1.22000 1.01731 0.94614 0.98947 0.87090 0.87112 0.89784 0.89784 0.90522 0.91055 0.88470 0.91555 0.91391 0.91946 0.91809 0.93079 0.92778 0.92560 0.85732 0.93229 0.89131 0.90609 0.90431 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.88 18.54 42.15 0.78 -4.10 16 2 C 0.20 1.51 14.38 -20.76 -0.30 1.21 16 3 C -0.02 -0.07 5.19 -29.51 -0.15 -0.22 16 4 C -0.08 -0.38 2.13 -90.57 -0.19 -0.58 16 5 C -0.13 -0.56 5.36 -26.61 -0.14 -0.71 16 6 C 0.11 0.89 6.42 -3.71 -0.02 0.86 16 7 N -0.60 -7.07 2.98 -173.54 -0.52 -7.59 16 8 C 0.52 8.66 5.61 -11.59 -0.07 8.60 16 9 O -0.52 -9.79 16.32 5.49 0.09 -9.70 16 10 C 0.51 10.12 5.48 -11.58 -0.06 10.06 16 11 O -0.51 -12.28 16.50 5.50 0.09 -12.19 16 12 N -0.59 -11.29 2.98 -173.54 -0.52 -11.81 16 13 C 0.11 1.65 6.33 -3.72 -0.02 1.63 16 14 C -0.13 -2.13 6.08 -26.61 -0.16 -2.29 16 15 C -0.11 -2.11 5.11 -26.69 -0.14 -2.24 16 16 C 0.04 0.92 2.24 -91.87 -0.21 0.72 16 17 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.52 -13.71 8.56 -34.44 -0.29 -14.00 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -25.18 11.39 55.43 0.63 -24.55 16 22 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.11 2.54 5.39 -3.93 -0.02 2.52 16 27 C 0.11 1.11 6.33 -3.93 -0.02 1.08 16 28 C -0.13 -0.97 5.17 -26.83 -0.14 -1.11 16 29 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.18 8.14 -51.92 -0.42 -0.24 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.91 7.03 -51.93 -0.37 0.55 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.95 6.22 -51.93 -0.32 0.63 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.12 3.38 5.10 -51.93 -0.27 3.11 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.19 6.30 -51.93 -0.33 0.86 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.59 7.34 -51.93 -0.38 0.21 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -34.50 384.81 -8.25 -42.75 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.54 Total: -1.57 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -2.04 Total: 7.12 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.38 Total: -48.04 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.18 Total: -21.89 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.50 -8.25 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118446708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.783 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds