Wall clock time and date at job start Tue Mar 31 2020 17:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46754 * 167.93711 * 3 2 1 5 5 C 1.53041 * 109.45810 * 184.99554 * 4 3 2 6 6 C 1.53189 * 109.30957 * 178.61458 * 5 4 3 7 7 N 1.46923 * 108.77695 * 54.64368 * 6 5 4 8 8 C 1.34772 * 120.63531 * 126.36615 * 7 6 5 9 9 O 1.21352 * 120.00012 * 4.84587 * 8 7 6 10 10 C 1.49449 * 120.00187 * 185.11880 * 8 7 6 11 11 O 1.21350 * 120.00093 * 274.60137 * 10 8 7 12 12 N 1.34778 * 119.99833 * 94.60007 * 10 8 7 13 13 C 1.46922 * 120.63288 * 5.15579 * 12 10 8 14 14 C 1.53186 * 108.77690 * 126.36464 * 13 12 10 15 15 C 1.53043 * 109.31137 * 54.63688 * 14 13 12 16 16 C 1.53040 * 109.53799 * 298.63089 * 15 14 13 17 17 H 1.08996 * 109.49844 * 301.38337 * 16 15 14 18 18 C 1.50698 * 109.50079 * 181.31714 * 16 15 14 19 19 H 1.08003 * 119.99906 * 359.97438 * 18 16 15 20 20 C 1.37872 * 120.00399 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99858 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 120.00118 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46904 * 90.00241 * 22 20 18 24 24 H 1.48498 * 109.46981 * 210.00031 * 22 20 18 25 25 H 1.48494 * 109.47191 * 329.99973 * 22 20 18 26 26 C 1.46930 * 120.62672 * 184.87132 * 12 10 8 27 27 C 1.46926 * 118.73403 * 306.63876 * 7 6 5 28 28 C 1.52761 * 109.00819 * 53.31100 * 27 7 6 29 29 H 1.08999 * 109.47299 * 47.94418 * 3 2 1 30 30 H 1.09000 * 109.46818 * 287.93528 * 3 2 1 31 31 H 1.08996 * 109.45920 * 304.97330 * 4 3 2 32 32 H 1.09009 * 109.49305 * 58.66619 * 5 4 3 33 33 H 1.08992 * 109.50359 * 298.56873 * 5 4 3 34 34 H 1.09001 * 109.59396 * 294.85082 * 6 5 4 35 35 H 1.09003 * 109.58438 * 174.43103 * 6 5 4 36 36 H 1.08996 * 109.58938 * 246.15630 * 13 12 10 37 37 H 1.09001 * 109.58529 * 6.43767 * 13 12 10 38 38 H 1.09004 * 109.50295 * 174.58780 * 14 13 12 39 39 H 1.09003 * 109.50236 * 294.68413 * 14 13 12 40 40 H 1.08997 * 109.46098 * 58.65244 * 15 14 13 41 41 H 1.09003 * 109.45967 * 178.62730 * 15 14 13 42 42 H 0.96999 * 120.00156 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.58814 * 353.42341 * 26 12 10 44 44 H 1.09001 * 109.58250 * 113.84630 * 26 12 10 45 45 H 1.09005 * 109.58935 * 173.14712 * 27 7 6 46 46 H 1.09002 * 109.58867 * 293.56602 * 27 7 6 47 47 H 1.09007 * 109.55930 * 185.55074 * 28 27 7 48 48 H 1.08998 * 109.38678 * 65.51408 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4116 -0.3015 5 6 4.6426 1.3876 -0.4247 6 6 5.1459 2.7949 -0.7607 7 7 4.6369 3.7328 0.2493 8 6 5.4795 4.5413 0.9221 9 8 6.6585 4.5627 0.6354 10 6 4.9630 5.4072 2.0253 11 8 4.4898 6.4954 1.7716 12 7 5.0228 4.9793 3.3020 13 6 5.6934 3.7158 3.6374 14 6 6.7376 3.9855 4.7253 15 6 6.0635 4.6743 5.9142 16 6 5.4775 6.0145 5.4644 17 1 6.2719 6.6413 5.0592 18 6 4.8423 6.7067 6.6427 19 1 4.8546 6.2377 7.6155 20 6 4.2445 7.9382 6.4787 21 7 4.2281 8.5087 5.2938 22 14 3.4565 8.7958 7.9392 23 1 4.4649 9.6523 8.6135 24 1 2.3272 9.6376 7.4687 25 1 2.9508 7.7794 8.8964 26 6 4.4239 5.7706 4.3855 27 6 3.1925 3.7682 0.5161 28 6 2.7104 2.3539 0.8338 29 1 2.9717 -0.6875 -0.7630 30 1 2.9714 -0.3156 0.9777 31 1 2.6828 1.7622 -1.2376 32 1 4.9326 0.6984 -1.2179 33 1 5.0788 1.0609 0.5192 34 1 4.7835 3.0871 -1.7463 35 1 6.2358 2.8048 -0.7522 36 1 4.9593 2.9989 4.0052 37 1 6.1827 3.3149 2.7497 38 1 7.1751 3.0420 5.0517 39 1 7.5201 4.6312 4.3266 40 1 5.2648 4.0389 6.2969 41 1 6.7995 4.8454 6.6998 42 1 3.8078 9.3753 5.1785 43 1 4.0779 6.7263 3.9918 44 1 3.5841 5.2247 4.8155 45 1 2.9939 4.4202 1.3667 46 1 2.6675 4.1414 -0.3633 47 1 1.6252 2.3527 0.9363 48 1 3.1644 2.0177 1.7660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118446708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:52 Heat of formation + Delta-G solvation = -76.485286 kcal Electronic energy + Delta-G solvation = -29875.616132 eV Core-core repulsion = 25928.990321 eV Total energy + Delta-G solvation = -3946.625812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10613 -40.31573 -39.06981 -38.41724 -37.43544 -35.34096 -34.95858 -33.55531 -32.20721 -31.65798 -30.19530 -27.74844 -26.85674 -25.42865 -24.45637 -23.62639 -23.34164 -21.57920 -20.75646 -19.70846 -18.98302 -18.31144 -18.19788 -17.98621 -17.49023 -16.56765 -16.11045 -15.93802 -15.85949 -15.67391 -15.32565 -15.25406 -15.05381 -14.77211 -14.62103 -14.47236 -14.37483 -14.06496 -13.95931 -13.62360 -13.54344 -13.46725 -13.11960 -12.89358 -12.74857 -12.56702 -12.37523 -12.29213 -12.24633 -12.11399 -11.85944 -11.81352 -11.67450 -11.45360 -11.35978 -11.11181 -10.96756 -10.56514 -10.49611 -9.87651 -9.60281 -8.11176 -6.28611 0.98913 1.12939 1.41307 1.42622 1.52324 1.53303 1.90636 1.96904 2.35380 2.43468 3.11763 3.18107 3.19450 3.70036 3.77496 3.94846 4.01198 4.10550 4.13441 4.26426 4.27603 4.38257 4.52915 4.58203 4.67973 4.72925 4.74715 4.77988 4.79857 4.83000 4.90668 5.01103 5.06003 5.07186 5.10094 5.18834 5.22706 5.23911 5.30384 5.44516 5.47921 5.54133 5.59041 5.87380 5.94413 5.97190 6.28686 6.35149 6.67132 6.76040 6.82219 6.90748 7.42087 8.92299 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.003245 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.579373 B = 8626.874111 C = 9254.883480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.234 3.766 3 C -0.016 4.016 4 C -0.078 4.078 5 C -0.115 4.115 6 C 0.099 3.901 7 N -0.582 5.582 8 C 0.528 3.472 9 O -0.547 6.547 10 C 0.496 3.504 11 O -0.567 6.567 12 N -0.585 5.585 13 C 0.106 3.894 14 C -0.127 4.127 15 C -0.103 4.103 16 C 0.035 3.965 17 H -0.020 1.020 18 C -0.532 4.532 19 H 0.066 0.934 20 C 0.009 3.991 21 N -0.917 5.917 22 Si 0.958 3.042 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.259 1.259 26 C 0.125 3.875 27 C 0.102 3.898 28 C -0.129 4.129 29 H 0.151 0.849 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.259 0.741 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -23.171 -11.988 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.082 4.082 3 C -0.056 4.056 4 C -0.098 4.098 5 C -0.152 4.152 6 C -0.021 4.021 7 N -0.316 5.316 8 C 0.310 3.690 9 O -0.425 6.425 10 C 0.279 3.721 11 O -0.446 6.446 12 N -0.318 5.318 13 C -0.016 4.016 14 C -0.165 4.165 15 C -0.141 4.141 16 C 0.016 3.984 17 H -0.002 1.002 18 C -0.570 4.570 19 H 0.084 0.916 20 C -0.190 4.190 21 N -0.555 5.555 22 Si 0.784 3.216 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.183 1.183 26 C 0.003 3.997 27 C -0.020 4.020 28 C -0.167 4.167 29 H 0.168 0.832 30 H 0.152 0.848 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.354 -22.468 -12.360 25.646 hybrid contribution -0.180 1.870 0.788 2.037 sum -0.534 -20.598 -11.572 23.632 Atomic orbital electron populations 1.81312 1.15732 1.10781 1.11506 1.30035 0.96094 0.91111 0.90978 1.19720 0.78412 0.98925 1.08504 1.21125 0.96691 0.93092 0.98882 1.21956 0.93282 0.94686 1.05317 1.22080 1.00877 0.88818 0.90344 1.48190 1.07673 1.36967 1.38798 1.20025 0.86252 0.79854 0.82884 1.90746 1.16902 1.66464 1.68386 1.20768 0.79399 0.87068 0.84902 1.90798 1.47226 1.22893 1.83661 1.48593 1.53897 1.23684 1.05589 1.22026 0.95917 0.84212 0.99416 1.21909 0.97204 1.01907 0.95486 1.21513 0.99486 0.96050 0.97009 1.18865 0.93101 0.93253 0.93221 1.00162 1.21494 1.36671 1.03362 0.95522 0.91569 1.25905 0.96716 0.98199 0.98177 1.70087 1.44866 1.16780 1.23806 0.85551 0.77878 0.78623 0.79595 1.20440 1.21469 1.18272 1.21805 0.96144 0.95286 0.86440 1.21812 0.78813 0.99493 1.01881 1.21982 1.01259 0.92860 1.00624 0.83158 0.84755 0.89291 0.85907 0.89803 0.89449 0.89469 0.87983 0.89559 0.87167 0.94111 0.91357 0.92807 0.93143 0.90377 0.92561 0.92615 0.89671 0.91024 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -10.96 18.54 20.01 0.37 -10.59 16 2 C 0.23 2.76 14.38 89.44 1.29 4.04 16 3 C -0.02 -0.01 5.19 28.79 0.15 0.14 16 4 C -0.08 -0.34 2.13 -10.76 -0.02 -0.36 16 5 C -0.11 -0.39 5.36 30.67 0.16 -0.22 16 6 C 0.10 1.28 6.42 86.36 0.55 1.83 16 7 N -0.58 -12.91 2.98 -821.32 -2.45 -15.36 16 8 C 0.53 17.63 5.61 87.27 0.49 18.12 16 9 O -0.55 -20.70 16.32 -3.25 -0.05 -20.75 16 10 C 0.50 20.86 5.48 87.27 0.48 21.34 16 11 O -0.57 -29.58 16.50 -3.25 -0.05 -29.63 16 12 N -0.59 -23.12 2.98 -821.32 -2.45 -25.56 16 13 C 0.11 2.99 6.33 86.36 0.55 3.53 16 14 C -0.13 -3.79 6.08 30.67 0.19 -3.61 16 15 C -0.10 -3.83 5.11 30.62 0.16 -3.67 16 16 C 0.03 1.73 2.24 -11.61 -0.03 1.71 16 17 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 18 C -0.53 -28.67 8.56 25.60 0.22 -28.46 16 19 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 20 C 0.01 0.52 5.30 84.65 0.45 0.97 16 21 N -0.92 -55.56 11.39 21.45 0.24 -55.31 16 22 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 26 C 0.12 6.00 5.39 86.22 0.46 6.46 16 27 C 0.10 2.04 6.33 86.22 0.55 2.59 16 28 C -0.13 -1.51 5.17 30.53 0.16 -1.36 16 29 H 0.15 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.12 -0.36 8.14 -2.38 -0.02 -0.38 16 33 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.39 7.03 -2.39 -0.02 1.38 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.09 2.18 6.22 -2.39 -0.01 2.17 16 38 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.08 4.57 5.10 -2.39 -0.01 4.55 16 44 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.06 1.53 6.30 -2.38 -0.02 1.51 16 46 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 0.97 7.34 -2.38 -0.02 0.95 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -85.40 384.81 4.40 -81.00 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.96 Total: 7.38 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 5.80 Total: 23.05 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -4.28 Total: -106.83 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.11 Total: -50.38 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -85.40 4.40 -81.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118446708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.510 kcal (2) G-P(sol) polarization free energy of solvation -85.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds