Wall clock time and date at job start Tue Mar 31 2020 18:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99951 * 2 1 4 4 H 1.48496 * 109.46903 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46971 * 299.99740 * 3 2 1 6 6 H 1.48496 * 109.47063 * 59.99624 * 3 2 1 7 7 C 1.38810 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99430 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99395 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46801 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47396 * 59.99940 * 11 10 9 13 13 C 1.55326 * 109.40341 * 180.02562 * 11 10 9 14 14 N 1.45122 * 109.25877 * 187.88248 * 13 11 10 15 15 C 1.34776 * 118.75799 * 90.84819 * 14 13 11 16 16 O 1.21281 * 119.99888 * 359.73759 * 15 14 13 17 17 C 1.50696 * 120.00208 * 179.72891 * 15 14 13 18 18 C 1.52995 * 109.47323 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47322 * 180.02562 * 18 17 15 20 20 C 1.38653 * 120.79324 * 89.99951 * 19 18 17 21 21 C 1.38199 * 119.16102 * 180.25929 * 20 19 18 22 22 N 1.31872 * 120.76568 * 359.40208 * 21 20 19 23 23 C 1.31868 * 121.72287 * 0.63104 * 22 21 20 24 24 C 1.38203 * 120.76795 * 359.66432 * 23 22 21 25 25 C 1.47512 * 122.48271 * 270.57351 * 14 13 11 26 26 C 1.53569 * 111.03053 * 41.88425 * 25 14 13 27 27 C 1.51538 * 109.58057 * 39.97338 * 26 25 14 28 28 O 1.38019 * 109.47164 * 299.99916 * 11 10 9 29 29 H 0.96994 * 119.99881 * 0.02562 * 1 2 3 30 30 H 0.96990 * 120.00433 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47194 * 59.99978 * 10 9 7 32 32 H 1.09003 * 109.47210 * 300.00023 * 10 9 7 33 33 H 1.09003 * 109.50973 * 68.00759 * 13 11 10 34 34 H 1.08996 * 109.69441 * 307.87325 * 13 11 10 35 35 H 1.09004 * 109.46827 * 60.00650 * 17 15 14 36 36 H 1.08997 * 109.47372 * 300.00998 * 17 15 14 37 37 H 1.08992 * 109.47302 * 60.00127 * 18 17 15 38 38 H 1.09006 * 109.47248 * 300.00005 * 18 17 15 39 39 H 1.08002 * 120.41474 * 359.97438 * 20 19 18 40 40 H 1.08007 * 119.61545 * 179.72038 * 21 20 19 41 41 H 1.08004 * 119.61444 * 179.68048 * 23 22 21 42 42 H 1.07997 * 120.42093 * 179.97438 * 24 23 22 43 43 H 1.09006 * 109.16403 * 162.28133 * 25 14 13 44 44 H 1.08991 * 109.16573 * 281.47985 * 25 14 13 45 45 H 1.08992 * 109.45289 * 160.00987 * 26 25 14 46 46 H 1.08999 * 109.45208 * 279.94770 * 26 25 14 47 47 H 1.09001 * 109.59346 * 28.38532 * 27 26 25 48 48 H 1.09005 * 109.58791 * 148.82082 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0639 -4.8196 -0.0001 12 1 0.4376 -4.7617 -0.8903 13 6 1.8422 -6.1639 0.0005 14 7 0.9077 -7.2581 -0.1879 15 6 0.6444 -7.6773 -1.4415 16 8 1.1813 -7.1387 -2.3863 17 6 -0.3168 -8.8153 -1.6692 18 6 -0.4357 -9.0901 -3.1696 19 6 -1.3975 -10.2277 -3.3973 20 6 -2.7514 -9.9878 -3.5752 21 6 -3.6040 -11.0567 -3.7762 22 7 -3.1415 -12.2911 -3.8116 23 6 -1.8604 -12.5566 -3.6459 24 6 -0.9492 -11.5393 -3.4344 25 6 0.2396 -7.9327 0.9410 26 6 -0.2252 -6.9157 1.9937 27 6 -0.7813 -5.6873 1.3024 28 8 0.2700 -4.7468 1.1265 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.6848 -3.7144 0.8905 32 1 2.6849 -3.7144 -0.8895 33 1 2.3568 -6.2861 0.9536 34 1 2.5720 -6.1662 -0.8090 35 1 -1.2955 -8.5498 -1.2694 36 1 0.0515 -9.7085 -1.1646 37 1 0.5429 -9.3557 -3.5690 38 1 -0.8040 -8.1969 -3.6745 39 1 -3.1355 -8.9786 -3.5523 40 1 -4.6607 -10.8786 -3.9111 41 1 -1.5194 -13.5809 -3.6762 42 1 0.0986 -11.7631 -3.2990 43 1 -0.6248 -8.4825 0.5685 44 1 0.9360 -8.6326 1.4025 45 1 -1.0000 -7.3647 2.6149 46 1 0.6202 -6.6287 2.6192 47 1 -1.1877 -5.9673 0.3305 48 1 -1.5670 -5.2467 1.9162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200873473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:06 Heat of formation + Delta-G solvation = -29.789357 kcal Electronic energy + Delta-G solvation = -28541.181598 eV Core-core repulsion = 24596.580674 eV Total energy + Delta-G solvation = -3944.600924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81409 -40.36618 -38.58172 -35.71042 -35.18953 -34.56863 -32.87544 -31.56160 -31.23581 -30.88485 -28.82646 -26.88015 -25.86335 -24.56901 -23.82072 -22.73898 -21.83287 -21.64234 -20.92598 -19.04061 -17.76713 -17.17143 -16.85334 -16.72733 -16.48553 -16.36067 -15.97364 -15.90560 -15.13892 -14.81564 -14.42007 -14.25604 -14.15025 -13.98530 -13.69943 -13.31252 -13.17301 -13.09571 -12.84362 -12.59022 -12.45221 -12.32240 -12.13636 -11.97186 -11.64071 -11.40373 -11.32044 -10.99477 -10.80821 -10.78147 -10.27300 -10.09340 -9.96627 -9.84513 -9.74637 -9.64929 -9.52663 -9.41747 -8.82389 -8.58995 -6.83267 -5.68510 -2.96532 0.76493 0.85708 2.45687 2.79434 3.44553 3.48155 3.53220 3.55844 3.94446 4.03533 4.11475 4.36380 4.49303 4.53667 4.60525 4.66444 4.69357 4.74940 4.76048 4.80341 4.90913 5.07773 5.19898 5.26393 5.32150 5.32748 5.34728 5.42751 5.47392 5.47922 5.58451 5.63502 5.64693 5.75774 5.82547 5.94975 5.97824 6.01785 6.08780 6.33845 6.34543 6.45911 6.66830 6.79211 7.14934 7.61059 7.76111 7.99616 8.02807 8.49933 9.61507 10.20008 10.56106 11.54527 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.002227 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.520860 B =12569.899647 C =13006.527140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.090 3.910 12 H 0.051 0.949 13 C 0.080 3.920 14 N -0.610 5.610 15 C 0.506 3.494 16 O -0.531 6.531 17 C -0.133 4.133 18 C -0.070 4.070 19 C -0.036 4.036 20 C -0.169 4.169 21 C 0.100 3.900 22 N -0.491 5.491 23 C 0.098 3.902 24 C -0.171 4.171 25 C 0.105 3.895 26 C -0.167 4.167 27 C 0.074 3.926 28 O -0.367 6.367 29 H 0.253 0.747 30 H 0.387 0.613 31 H 0.026 0.974 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.045 0.955 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 -27.492 -1.172 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.037 3.963 11 C 0.030 3.970 12 H 0.069 0.931 13 C -0.043 4.043 14 N -0.343 5.343 15 C 0.293 3.707 16 O -0.407 6.407 17 C -0.173 4.173 18 C -0.108 4.108 19 C -0.044 4.044 20 C -0.189 4.189 21 C -0.057 4.057 22 N -0.201 5.201 23 C -0.058 4.058 24 C -0.190 4.190 25 C -0.018 4.018 26 C -0.206 4.206 27 C -0.003 4.003 28 O -0.285 6.285 29 H 0.063 0.937 30 H 0.221 0.779 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.154 0.846 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.152 0.848 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.529 -27.644 -1.671 28.062 hybrid contribution 0.618 1.296 0.114 1.440 sum -3.911 -26.348 -1.557 26.682 Atomic orbital electron populations 1.69689 1.05098 1.25347 1.57994 1.24743 0.95531 0.97642 1.03253 0.86107 0.78763 0.84179 0.77109 1.20571 1.21941 1.21937 1.19284 0.91030 0.84137 1.42254 0.91130 1.42217 1.06053 0.99479 1.89216 1.20619 0.92396 0.84745 0.98492 1.22357 0.92478 0.93974 0.88229 0.93115 1.22539 0.92409 0.86083 1.03288 1.47966 1.45007 1.35208 1.06137 1.20688 0.82721 0.84495 0.82755 1.90747 1.51436 1.57569 1.40959 1.21671 1.00012 0.97848 0.97748 1.20410 0.98904 0.96341 0.95100 1.20369 0.94474 0.94929 0.94629 1.22147 0.93696 1.01183 1.01885 1.22794 1.00378 0.87670 0.94859 1.67687 1.16341 1.23165 1.12862 1.22772 0.88564 0.99686 0.94823 1.22101 1.01530 0.93050 1.02366 1.22009 0.97212 0.94904 0.87625 1.22516 1.02755 0.96896 0.98407 1.22108 0.89940 0.88980 0.99268 1.86447 1.44469 1.54284 1.43266 0.93679 0.77888 0.95609 0.94805 0.89910 0.88834 0.88677 0.88784 0.89526 0.89387 0.84584 0.82711 0.82809 0.84753 0.89977 0.91433 0.89681 0.89879 0.93629 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.06 55.49 0.72 -28.44 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -19.49 5.49 -59.91 -0.33 -19.81 16 10 C 0.17 3.54 5.95 -4.04 -0.02 3.51 16 11 C 0.09 1.59 2.74 -25.50 -0.07 1.52 16 12 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 13 C 0.08 1.12 4.91 -3.55 -0.02 1.10 16 14 N -0.61 -6.95 2.18 -172.14 -0.38 -7.32 16 15 C 0.51 6.07 7.63 -10.99 -0.08 5.99 16 16 O -0.53 -8.58 15.41 5.56 0.09 -8.49 16 17 C -0.13 -1.04 4.02 -27.89 -0.11 -1.15 16 18 C -0.07 -0.58 4.68 -27.89 -0.13 -0.71 16 19 C -0.04 -0.28 5.17 -104.31 -0.54 -0.82 16 20 C -0.17 -1.27 9.82 -39.44 -0.39 -1.65 16 21 C 0.10 0.79 11.18 -17.55 -0.20 0.59 16 22 N -0.49 -4.59 10.36 -13.25 -0.14 -4.73 16 23 C 0.10 0.74 11.18 -17.55 -0.20 0.55 16 24 C -0.17 -1.19 9.82 -39.44 -0.39 -1.58 16 25 C 0.10 0.83 5.99 -3.19 -0.02 0.81 16 26 C -0.17 -1.51 5.79 -27.18 -0.16 -1.67 16 27 C 0.07 0.94 6.38 36.42 0.23 1.17 16 28 O -0.37 -6.47 9.18 -26.55 -0.24 -6.71 16 29 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.39 11.07 7.53 -40.82 -0.31 10.77 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.09 1.39 7.28 -51.93 -0.38 1.01 16 35 H 0.09 0.63 7.41 -51.93 -0.38 0.25 16 36 H 0.09 0.56 8.04 -51.93 -0.42 0.14 16 37 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 38 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 42 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.08 0.48 5.88 -51.93 -0.31 0.17 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 47 H 0.05 0.57 7.40 -51.93 -0.38 0.19 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -36.22 390.31 -9.38 -45.60 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.63 Total: 5.95 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.33 Total: 0.08 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.12 Total: -60.31 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.16 Total: -15.21 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.22 -9.38 -45.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200873473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.812 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds