Wall clock time and date at job start Tue Mar 31 2020 17:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48500 * 109.47105 * 269.99871 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00428 * 3 2 1 6 6 H 1.48502 * 109.47052 * 150.00189 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 13 13 H 1.08995 * 110.87585 * 82.93006 * 12 11 10 14 14 C 1.53006 * 110.71889 * 206.13300 * 12 11 10 15 15 N 1.46500 * 109.46719 * 179.97438 * 14 12 11 16 16 C 1.34781 * 119.99697 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99943 * 180.02562 * 16 15 14 19 19 C 1.53006 * 109.46965 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.46890 * 179.97438 * 19 18 16 21 21 N 1.46501 * 109.46828 * 179.97438 * 20 19 18 22 22 C 1.35767 * 119.62298 * 89.99764 * 21 20 19 23 23 C 1.35342 * 120.70044 * 179.97438 * 22 21 20 24 24 C 1.40192 * 119.95018 * 0.02629 * 23 22 21 25 25 C 1.36403 * 119.26714 * 0.02562 * 24 23 22 26 26 C 1.34654 * 119.62624 * 269.72727 * 21 20 19 27 27 O 1.22065 * 119.98267 * 359.97438 * 26 21 20 28 28 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 29 29 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 31 31 H 1.09001 * 110.43832 * 274.70471 * 10 9 7 32 32 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 33 33 H 1.09001 * 111.03628 * 155.18095 * 11 10 9 34 34 H 1.08996 * 109.46429 * 299.97004 * 14 12 11 35 35 H 1.08997 * 109.47048 * 59.97457 * 14 12 11 36 36 H 0.97000 * 120.00631 * 359.97438 * 15 14 12 37 37 H 1.09002 * 109.46911 * 299.99613 * 18 16 15 38 38 H 1.08997 * 109.47358 * 59.99762 * 18 16 15 39 39 H 1.09000 * 109.46509 * 299.99896 * 19 18 16 40 40 H 1.08997 * 109.47048 * 59.99853 * 19 18 16 41 41 H 1.08998 * 109.46692 * 299.99616 * 20 19 18 42 42 H 1.08994 * 109.47161 * 59.99633 * 20 19 18 43 43 H 1.07996 * 119.64773 * 0.02562 * 22 21 20 44 44 H 1.08004 * 120.02621 * 179.97438 * 23 22 21 45 45 H 1.08007 * 120.37187 * 179.97438 * 24 23 22 46 46 H 1.07992 * 120.34842 * 180.02562 * 25 24 23 47 47 H 1.09002 * 109.88367 * 61.61048 * 28 9 7 48 48 H 1.09000 * 109.88319 * 300.59666 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 6 0.7805 -4.7551 -0.0292 13 1 0.5514 -5.1052 0.9772 14 6 1.1275 -5.9317 -0.9437 15 7 2.2453 -6.6840 -0.3686 16 6 2.7257 -7.7699 -1.0062 17 8 2.2323 -8.1244 -2.0559 18 6 3.8751 -8.5442 -0.4143 19 6 4.2222 -9.7207 -1.3289 20 6 5.3896 -10.5064 -0.7283 21 7 5.7215 -11.6333 -1.6037 22 6 6.6355 -11.4674 -2.5937 23 6 6.9589 -12.4937 -3.4146 24 6 6.3469 -13.7437 -3.2468 25 6 5.4280 -13.9082 -2.2523 26 6 5.1205 -12.8232 -1.4137 27 8 4.3047 -12.9582 -0.5158 28 6 1.9316 -3.7276 -0.0005 29 1 -0.4849 0.8401 0.0004 30 1 -0.6042 -1.7636 -0.6122 31 1 -0.5298 -2.4942 1.0205 32 1 -0.3527 -3.9005 -1.7006 33 1 -1.3579 -4.3402 -0.2796 34 1 0.2606 -6.5853 -1.0394 35 1 1.4100 -5.5564 -1.9273 36 1 2.6402 -6.4002 0.4708 37 1 4.7420 -7.8905 -0.3178 38 1 3.5921 -8.9199 0.5689 39 1 3.3551 -10.3741 -1.4250 40 1 4.5050 -9.3453 -2.3123 41 1 6.2564 -9.8526 -0.6326 42 1 5.1071 -10.8817 0.2553 43 1 7.1102 -10.5066 -2.7271 44 1 7.6873 -12.3495 -4.1990 45 1 6.5996 -14.5673 -3.8983 46 1 4.9462 -14.8637 -2.1071 47 1 2.5285 -3.8644 0.9012 48 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663609099.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:46 Heat of formation + Delta-G solvation = -21.930392 kcal Electronic energy + Delta-G solvation = -27350.130544 eV Core-core repulsion = 23405.870409 eV Total energy + Delta-G solvation = -3944.260134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68363 -39.78016 -37.70906 -37.21788 -35.91545 -34.65184 -33.14123 -32.47983 -30.25905 -29.91558 -28.60884 -27.53546 -25.54488 -24.42415 -23.82236 -23.08000 -21.94410 -20.66708 -19.94540 -19.57827 -18.07785 -17.67591 -17.08803 -16.76699 -16.59204 -16.18935 -16.00200 -15.71243 -15.20524 -14.90350 -14.70091 -14.50161 -14.22018 -13.82636 -13.54688 -13.13402 -13.01105 -12.70813 -12.53781 -12.43192 -12.26668 -12.13366 -11.96549 -11.78713 -11.69445 -11.50044 -11.16058 -10.98427 -10.82494 -10.49932 -10.46527 -10.25216 -10.16910 -10.04516 -9.92952 -9.74852 -9.52605 -8.97799 -8.68270 -8.35165 -6.86270 -5.68377 -3.09968 0.44788 1.50872 2.23564 2.63227 3.18445 3.32872 3.37592 3.42288 3.44458 4.13665 4.20296 4.42530 4.46392 4.47978 4.58432 4.69543 4.83084 4.86194 4.94751 5.03574 5.09282 5.16104 5.24335 5.27358 5.38650 5.50088 5.58328 5.65496 5.66845 5.69460 5.86556 5.88517 5.89646 6.05474 6.09281 6.13796 6.31477 6.43737 6.51875 6.56788 6.69460 6.71068 6.87800 7.48227 7.52673 7.59256 7.70488 7.82631 8.22802 8.33172 9.18641 9.79995 10.45267 11.35921 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.001692 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.167606 B =16539.791434 C =17186.966377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.725 5.725 16 C 0.510 3.490 17 O -0.546 6.546 18 C -0.138 4.138 19 C -0.117 4.117 20 C 0.088 3.912 21 N -0.494 5.494 22 C 0.137 3.863 23 C -0.237 4.237 24 C -0.017 4.017 25 C -0.246 4.246 26 C 0.511 3.489 27 O -0.551 6.551 28 C 0.142 3.858 29 H 0.252 0.748 30 H 0.107 0.893 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.162 0.838 44 H 0.145 0.855 45 H 0.134 0.866 46 H 0.147 0.853 47 H 0.017 0.983 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.083 -24.447 -3.848 28.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.376 5.376 16 C 0.296 3.704 17 O -0.423 6.423 18 C -0.179 4.179 19 C -0.156 4.156 20 C -0.033 4.033 21 N -0.204 5.204 22 C 0.009 3.991 23 C -0.260 4.260 24 C -0.039 4.039 25 C -0.268 4.268 26 C 0.313 3.687 27 O -0.433 6.433 28 C 0.016 3.984 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.180 0.820 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.165 0.835 47 H 0.035 0.965 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 13.135 -24.512 -3.977 28.092 hybrid contribution 0.753 1.026 0.387 1.330 sum 13.888 -23.486 -3.590 27.520 Atomic orbital electron populations 1.69793 1.04894 1.24806 1.57526 1.24797 0.95746 0.97749 1.02429 0.86070 0.78491 0.83322 0.77582 1.21585 1.21624 1.20772 1.19066 0.90456 0.82480 1.43177 0.90541 1.44574 1.01957 0.99687 1.86849 1.21984 0.84654 0.92531 0.98183 1.23001 0.95559 0.98567 1.00322 1.22448 0.98312 0.94026 0.98613 0.90583 1.21450 0.88242 0.92224 0.97222 1.46103 1.36138 1.28832 1.26545 1.20529 0.84321 0.80666 0.84853 1.90712 1.60403 1.68200 1.23007 1.21557 0.98007 0.97450 1.00869 1.21633 0.98459 0.96234 0.99257 1.22092 0.99420 0.86690 0.95132 1.45568 1.34362 1.12752 1.27721 1.22015 0.89274 1.00524 0.87286 1.20671 1.07577 0.93307 1.04454 1.21456 0.91212 0.96950 0.94256 1.22150 1.04734 0.99999 0.99887 1.17194 0.82527 0.82494 0.86472 1.90976 1.34827 1.83051 1.34466 1.21310 0.93478 0.86049 0.97601 0.93701 0.87552 0.96930 0.91840 0.92098 0.91724 0.91310 0.76394 0.88448 0.88406 0.90133 0.90553 0.88818 0.87916 0.82031 0.83757 0.84853 0.83545 0.96501 0.95890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.11 55.49 0.56 -26.14 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.17 10.28 -15.05 -0.15 -6.33 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -15.25 3.41 -169.81 -0.58 -15.83 16 10 C 0.15 3.62 5.91 -2.35 -0.01 3.60 16 11 C -0.14 -2.49 6.53 -24.58 -0.16 -2.65 16 12 C -0.11 -1.87 3.02 -88.78 -0.27 -2.14 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.92 4.99 -4.04 -0.02 1.90 16 15 N -0.73 -8.82 5.40 -60.29 -0.33 -9.14 16 16 C 0.51 6.41 7.83 -10.98 -0.09 6.32 16 17 O -0.55 -9.16 15.98 5.55 0.09 -9.07 16 18 C -0.14 -1.10 5.70 -27.88 -0.16 -1.26 16 19 C -0.12 -1.03 4.83 -26.73 -0.13 -1.16 16 20 C 0.09 0.60 5.34 -4.04 -0.02 0.58 16 21 N -0.49 -3.98 2.58 -119.78 -0.31 -4.29 16 22 C 0.14 0.71 10.28 -16.84 -0.17 0.53 16 23 C -0.24 -1.12 10.01 -39.88 -0.40 -1.52 16 24 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16 25 C -0.25 -2.11 9.99 -39.38 -0.39 -2.50 16 26 C 0.51 5.68 7.41 -15.45 -0.11 5.57 16 27 O -0.55 -8.27 16.63 4.86 0.08 -8.18 16 28 C 0.14 2.81 6.52 -3.06 -0.02 2.79 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.11 2.88 5.88 -51.93 -0.31 2.57 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.40 3.99 8.33 -40.82 -0.34 3.65 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.09 0.33 8.01 -51.93 -0.42 -0.09 16 42 H 0.10 0.80 7.38 -51.93 -0.38 0.42 16 43 H 0.16 0.31 8.04 -52.49 -0.42 -0.11 16 44 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 45 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 46 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.02 0.47 7.76 -51.93 -0.40 0.06 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -36.69 394.22 -9.89 -46.58 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.72 Total: 0.47 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.61 Total: 2.82 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.65 Total: -55.40 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.17 Total: -17.26 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.69 -9.89 -46.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663609099.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.653 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds