Wall clock time and date at job start Tue Mar 31 2020 17:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48500 * 109.47105 * 269.99871 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00428 * 3 2 1 6 6 H 1.48502 * 109.47052 * 150.00189 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 13 13 H 1.08995 * 110.87585 * 82.93006 * 12 11 10 14 14 C 1.53006 * 110.71889 * 206.13300 * 12 11 10 15 15 N 1.46500 * 109.46719 * 179.97438 * 14 12 11 16 16 C 1.34781 * 119.99697 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99943 * 180.02562 * 16 15 14 19 19 C 1.53006 * 109.46965 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.46890 * 179.97438 * 19 18 16 21 21 N 1.46501 * 109.46828 * 179.97438 * 20 19 18 22 22 C 1.35767 * 119.62298 * 89.99764 * 21 20 19 23 23 C 1.35342 * 120.70044 * 179.97438 * 22 21 20 24 24 C 1.40192 * 119.95018 * 0.02629 * 23 22 21 25 25 C 1.36403 * 119.26714 * 0.02562 * 24 23 22 26 26 C 1.34654 * 119.62624 * 269.72727 * 21 20 19 27 27 O 1.22065 * 119.98267 * 359.97438 * 26 21 20 28 28 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 29 29 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 31 31 H 1.09001 * 110.43832 * 274.70471 * 10 9 7 32 32 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 33 33 H 1.09001 * 111.03628 * 155.18095 * 11 10 9 34 34 H 1.08996 * 109.46429 * 299.97004 * 14 12 11 35 35 H 1.08997 * 109.47048 * 59.97457 * 14 12 11 36 36 H 0.97000 * 120.00631 * 359.97438 * 15 14 12 37 37 H 1.09002 * 109.46911 * 299.99613 * 18 16 15 38 38 H 1.08997 * 109.47358 * 59.99762 * 18 16 15 39 39 H 1.09000 * 109.46509 * 299.99896 * 19 18 16 40 40 H 1.08997 * 109.47048 * 59.99853 * 19 18 16 41 41 H 1.08998 * 109.46692 * 299.99616 * 20 19 18 42 42 H 1.08994 * 109.47161 * 59.99633 * 20 19 18 43 43 H 1.07996 * 119.64773 * 0.02562 * 22 21 20 44 44 H 1.08004 * 120.02621 * 179.97438 * 23 22 21 45 45 H 1.08007 * 120.37187 * 179.97438 * 24 23 22 46 46 H 1.07992 * 120.34842 * 180.02562 * 25 24 23 47 47 H 1.09002 * 109.88367 * 61.61048 * 28 9 7 48 48 H 1.09000 * 109.88319 * 300.59666 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 6 0.7805 -4.7551 -0.0292 13 1 0.5514 -5.1052 0.9772 14 6 1.1275 -5.9317 -0.9437 15 7 2.2453 -6.6840 -0.3686 16 6 2.7257 -7.7699 -1.0062 17 8 2.2323 -8.1244 -2.0559 18 6 3.8751 -8.5442 -0.4143 19 6 4.2222 -9.7207 -1.3289 20 6 5.3896 -10.5064 -0.7283 21 7 5.7215 -11.6333 -1.6037 22 6 6.6355 -11.4674 -2.5937 23 6 6.9589 -12.4937 -3.4146 24 6 6.3469 -13.7437 -3.2468 25 6 5.4280 -13.9082 -2.2523 26 6 5.1205 -12.8232 -1.4137 27 8 4.3047 -12.9582 -0.5158 28 6 1.9316 -3.7276 -0.0005 29 1 -0.4849 0.8401 0.0004 30 1 -0.6042 -1.7636 -0.6122 31 1 -0.5298 -2.4942 1.0205 32 1 -0.3527 -3.9005 -1.7006 33 1 -1.3579 -4.3402 -0.2796 34 1 0.2606 -6.5853 -1.0394 35 1 1.4100 -5.5564 -1.9273 36 1 2.6402 -6.4002 0.4708 37 1 4.7420 -7.8905 -0.3178 38 1 3.5921 -8.9199 0.5689 39 1 3.3551 -10.3741 -1.4250 40 1 4.5050 -9.3453 -2.3123 41 1 6.2564 -9.8526 -0.6326 42 1 5.1071 -10.8817 0.2553 43 1 7.1102 -10.5066 -2.7271 44 1 7.6873 -12.3495 -4.1990 45 1 6.5996 -14.5673 -3.8983 46 1 4.9462 -14.8637 -2.1071 47 1 2.5285 -3.8644 0.9012 48 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663609099.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:45 Heat of formation + Delta-G solvation = -46.772095 kcal Electronic energy + Delta-G solvation = -27351.207761 eV Core-core repulsion = 23405.870409 eV Total energy + Delta-G solvation = -3945.337351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28795 -40.84041 -39.26531 -37.94950 -36.55249 -35.98941 -34.32557 -33.73515 -31.65999 -30.77689 -30.03967 -28.49474 -27.17472 -25.42385 -24.71228 -23.99231 -22.64967 -22.13073 -21.35621 -20.89847 -18.94907 -18.64038 -18.25458 -17.76758 -17.32892 -17.24155 -16.82008 -16.70249 -16.53812 -16.30487 -15.60105 -15.45650 -15.30473 -15.03169 -14.61868 -14.29752 -14.26214 -13.84619 -13.54253 -13.40981 -13.28604 -13.15969 -12.98852 -12.88774 -12.81239 -12.68456 -12.64265 -12.55733 -12.01826 -11.90227 -11.81708 -11.81096 -11.58707 -11.37969 -11.09482 -10.97707 -10.83866 -10.73751 -10.07556 -8.94095 -8.87449 -7.77310 -5.21149 -0.04744 0.94894 1.46896 1.48762 1.57265 1.66703 1.68322 2.25834 2.50033 2.72010 3.32849 3.61458 3.68200 3.69737 3.78701 3.82761 3.96638 3.99519 4.01990 4.05886 4.17661 4.30521 4.34766 4.43854 4.45915 4.54384 4.58818 4.64218 4.67498 4.71805 4.82955 4.91927 5.01656 5.06237 5.10044 5.12234 5.18340 5.24991 5.36648 5.42862 5.45521 5.49699 5.64937 5.70015 5.82524 6.13376 6.31545 6.58456 7.01687 7.10809 7.27724 7.79185 8.43476 9.25104 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.001692 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.167606 B =16539.791434 C =17186.966377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.096 0.904 14 C 0.144 3.856 15 N -0.718 5.718 16 C 0.506 3.494 17 O -0.594 6.594 18 C -0.128 4.128 19 C -0.109 4.109 20 C 0.090 3.910 21 N -0.494 5.494 22 C 0.133 3.867 23 C -0.236 4.236 24 C 0.005 3.995 25 C -0.289 4.289 26 C 0.490 3.510 27 O -0.613 6.613 28 C 0.139 3.861 29 H 0.246 0.754 30 H 0.070 0.930 31 H -0.009 1.009 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.416 0.584 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.088 0.912 43 H 0.204 0.796 44 H 0.180 0.820 45 H 0.164 0.836 46 H 0.140 0.860 47 H 0.032 0.968 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.352 -24.791 -4.303 30.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.367 4.367 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.163 4.163 12 C -0.113 4.113 13 H 0.114 0.886 14 C 0.019 3.981 15 N -0.369 5.369 16 C 0.294 3.706 17 O -0.475 6.475 18 C -0.168 4.168 19 C -0.148 4.148 20 C -0.031 4.031 21 N -0.203 5.203 22 C 0.006 3.994 23 C -0.258 4.258 24 C -0.017 4.017 25 C -0.310 4.310 26 C 0.296 3.704 27 O -0.502 6.502 28 C 0.014 3.986 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.009 0.991 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.252 0.748 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.158 0.842 42 H 0.107 0.893 43 H 0.221 0.779 44 H 0.197 0.803 45 H 0.181 0.819 46 H 0.157 0.843 47 H 0.050 0.950 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 16.468 -24.868 -4.431 30.153 hybrid contribution -0.182 1.132 0.429 1.225 sum 16.285 -23.735 -4.002 29.062 Atomic orbital electron populations 1.70056 1.06245 1.24968 1.58695 1.25655 0.96655 1.01070 1.02895 0.85048 0.77639 0.79041 0.77420 1.21394 1.22148 1.19300 1.19468 0.91051 0.83791 1.42347 0.89982 1.44897 1.02714 1.01065 1.86829 1.21773 0.84223 0.94765 0.96594 1.22845 0.97872 0.95658 0.99940 1.22284 0.95772 0.93384 0.99856 0.88621 1.21142 0.89301 0.91695 0.95952 1.45999 1.35452 1.28527 1.26963 1.21335 0.84779 0.80334 0.84125 1.90698 1.62091 1.69366 1.25310 1.21592 0.97366 0.96980 1.00845 1.21506 0.97627 0.95960 0.99693 1.22186 1.00333 0.86591 0.94001 1.45619 1.34226 1.12086 1.28351 1.22804 0.88066 1.02561 0.85933 1.21196 1.07435 0.92457 1.04757 1.21869 0.88818 0.98470 0.92568 1.22130 1.07459 0.99554 1.01890 1.17627 0.82440 0.83995 0.86386 1.90918 1.37869 1.84228 1.37157 1.21485 0.94643 0.84509 0.97971 0.94412 0.91226 0.99081 0.92075 0.89475 0.91402 0.93073 0.74752 0.84579 0.86513 0.94500 0.90844 0.84185 0.89338 0.77938 0.80271 0.81884 0.84257 0.95030 0.95982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.53 10.11 21.65 0.22 -56.31 16 2 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 3 Si 0.98 45.21 29.55 68.60 2.03 47.24 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.24 -13.14 10.28 84.03 0.86 -12.28 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.63 -31.73 3.41 -691.16 -2.35 -34.08 16 10 C 0.15 7.36 5.91 86.79 0.51 7.88 16 11 C -0.12 -4.46 6.53 31.99 0.21 -4.25 16 12 C -0.09 -2.87 3.02 -9.60 -0.03 -2.90 16 13 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 14 C 0.14 3.93 4.99 86.38 0.43 4.36 16 15 N -0.72 -15.75 5.40 -463.05 -2.50 -18.25 16 16 C 0.51 11.87 7.83 87.66 0.69 12.56 16 17 O -0.59 -19.82 15.98 -3.05 -0.05 -19.87 16 18 C -0.13 -1.69 5.70 29.85 0.17 -1.52 16 19 C -0.11 -1.80 4.83 30.60 0.15 -1.65 16 20 C 0.09 1.05 5.34 86.38 0.46 1.51 16 21 N -0.49 -7.39 2.58 -650.99 -1.68 -9.08 16 22 C 0.13 0.93 10.28 83.42 0.86 1.79 16 23 C -0.24 -1.37 10.01 22.08 0.22 -1.15 16 24 C 0.00 0.04 10.10 22.32 0.23 0.27 16 25 C -0.29 -5.16 9.99 22.40 0.22 -4.93 16 26 C 0.49 11.50 7.41 84.82 0.63 12.12 16 27 O -0.61 -20.18 16.63 -5.53 -0.09 -20.27 16 28 C 0.14 5.29 6.52 86.73 0.57 5.85 16 29 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.07 3.91 5.88 -2.39 -0.01 3.90 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.61 8.06 -2.39 -0.02 1.59 16 36 H 0.42 6.86 8.33 -92.71 -0.77 6.09 16 37 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 40 H 0.07 1.23 8.10 -2.39 -0.02 1.22 16 41 H 0.14 0.33 8.01 -2.39 -0.02 0.31 16 42 H 0.09 1.34 7.38 -2.39 -0.02 1.32 16 43 H 0.20 -0.33 8.04 -2.91 -0.02 -0.35 16 44 H 0.18 -0.17 8.06 -2.91 -0.02 -0.19 16 45 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 46 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 47 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.02 0.85 7.76 -2.39 -0.02 0.84 16 Total: -1.00 -86.92 394.22 2.39 -84.54 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.18 Total: 11.94 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.64 Total: 14.15 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -6.32 Total: -117.72 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.14 Total: -40.14 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -86.92 2.39 -84.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663609099.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.764 kcal (2) G-P(sol) polarization free energy of solvation -86.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds