Wall clock time and date at job start Tue Mar 31 2020 17:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00456 * 2 1 4 4 H 1.48494 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47089 * 300.00141 * 3 2 1 6 6 H 1.48496 * 109.46839 * 59.99977 * 3 2 1 7 7 C 1.38816 * 119.99418 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99572 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00461 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62644 * 0.03195 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.04433 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.53005 * 110.71903 * 153.84569 * 12 11 10 15 15 N 1.46500 * 109.47109 * 174.99655 * 14 12 11 16 16 C 1.34776 * 120.00180 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99388 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00282 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47010 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47102 * 180.02562 * 19 18 16 21 21 N 1.46497 * 109.47162 * 180.02562 * 20 19 18 22 22 C 1.35763 * 119.62685 * 90.00243 * 21 20 19 23 23 C 1.35355 * 120.70168 * 179.97438 * 22 21 20 24 24 C 1.40195 * 119.94559 * 0.02562 * 23 22 21 25 25 C 1.36401 * 119.26710 * 0.02562 * 24 23 22 26 26 C 1.34666 * 119.62258 * 269.72337 * 21 20 19 27 27 O 1.22061 * 119.98282 * 359.97438 * 26 21 20 28 28 C 1.47017 * 125.65385 * 180.02562 * 9 7 2 29 29 H 0.97005 * 119.99622 * 0.02562 * 1 2 3 30 30 H 1.09008 * 110.34870 * 85.22563 * 10 9 7 31 31 H 1.09001 * 110.40581 * 322.89599 * 10 9 7 32 32 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 33 33 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 34 34 H 1.08995 * 109.47101 * 294.99732 * 14 12 11 35 35 H 1.08998 * 109.46846 * 54.99796 * 14 12 11 36 36 H 0.96999 * 120.00061 * 0.02562 * 15 14 12 37 37 H 1.09002 * 109.46719 * 299.99812 * 18 16 15 38 38 H 1.09000 * 109.46775 * 60.00105 * 18 16 15 39 39 H 1.08995 * 109.47278 * 299.99882 * 19 18 16 40 40 H 1.09000 * 109.47283 * 60.00395 * 19 18 16 41 41 H 1.09009 * 109.46851 * 300.00165 * 20 19 18 42 42 H 1.08994 * 109.47447 * 59.99557 * 20 19 18 43 43 H 1.07994 * 119.65067 * 359.97438 * 22 21 20 44 44 H 1.07992 * 120.02512 * 179.97438 * 23 22 21 45 45 H 1.07999 * 120.36686 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.34501 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.88206 * 59.58041 * 28 9 7 48 48 H 1.09004 * 110.01118 * 298.49134 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1422 -2.5327 -0.0007 11 6 -0.4023 -3.9325 0.6096 12 6 0.7781 -4.7524 0.0249 13 1 0.5461 -5.0976 -0.9827 14 6 1.1222 -5.9318 0.9369 15 7 2.1561 -6.7537 0.3031 16 6 2.6193 -7.8542 0.9283 17 8 2.1797 -8.1643 2.0153 18 6 3.6833 -8.6994 0.2766 19 6 4.0273 -9.8787 1.1886 20 6 5.1080 -10.7365 0.5273 21 7 5.4369 -11.8661 1.4002 22 6 4.7523 -13.0319 1.2759 23 6 5.0386 -14.0895 2.0707 24 6 6.0511 -13.9866 3.0348 25 6 6.7371 -12.8141 3.1589 26 6 6.4187 -11.7381 2.3130 27 8 7.0289 -10.6853 2.4090 28 6 1.9315 -3.7276 -0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5277 -2.4852 -1.0192 31 1 -0.6003 -1.7591 0.6155 32 1 -1.3595 -4.3328 0.2753 33 1 -0.3537 -3.8994 1.6980 34 1 1.4905 -5.5572 1.8919 35 1 0.2297 -6.5350 1.1030 36 1 2.5079 -6.5055 -0.5661 37 1 3.3151 -9.0743 -0.6784 38 1 4.5755 -8.0958 0.1105 39 1 4.3952 -9.5042 2.1438 40 1 3.1348 -10.4823 1.3543 41 1 4.7404 -11.1110 -0.4281 42 1 6.0003 -10.1328 0.3618 43 1 3.9711 -13.1163 0.5351 44 1 4.4869 -15.0115 1.9627 45 1 6.2849 -14.8260 3.6728 46 1 7.5207 -12.7158 3.8956 47 1 2.5571 -3.8514 0.8834 48 1 2.5304 -3.8660 -0.9007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663609100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:49 Heat of formation + Delta-G solvation = -21.562647 kcal Electronic energy + Delta-G solvation = -27341.268141 eV Core-core repulsion = 23397.023953 eV Total energy + Delta-G solvation = -3944.244188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68197 -39.78296 -37.71328 -37.21562 -35.91941 -34.66315 -33.14517 -32.47689 -30.26087 -29.90520 -28.60589 -27.54646 -25.52516 -24.42237 -23.82218 -23.07570 -21.94284 -20.66650 -19.97020 -19.57315 -18.07721 -17.67526 -17.08158 -16.77008 -16.58362 -16.19329 -16.00404 -15.74911 -15.18037 -14.87098 -14.69329 -14.52929 -14.20262 -13.81273 -13.53985 -13.14157 -13.01311 -12.70472 -12.51897 -12.42792 -12.24494 -12.16465 -11.96915 -11.78359 -11.69916 -11.51743 -11.16586 -10.96134 -10.82801 -10.50059 -10.44208 -10.24525 -10.14226 -10.02189 -9.93288 -9.74836 -9.51103 -8.98314 -8.66575 -8.35024 -6.84743 -5.66863 -3.08451 0.44646 1.50857 2.23404 2.62546 3.18148 3.32986 3.39059 3.44723 3.47152 4.11942 4.19627 4.42356 4.46950 4.48461 4.58238 4.68666 4.82692 4.85482 4.94160 5.02690 5.09598 5.15827 5.23526 5.27121 5.38809 5.51540 5.58243 5.64868 5.68965 5.69346 5.86917 5.88306 5.89706 6.05278 6.09885 6.13709 6.33196 6.42888 6.53888 6.56661 6.70751 6.71073 6.89100 7.49400 7.52040 7.62121 7.71351 7.84228 8.22270 8.34968 9.20891 9.81838 10.46434 11.37220 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024296 B = 0.001702 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.162383 B =16445.382962 C =17195.335735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.136 4.136 12 C -0.114 4.114 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.725 5.725 16 C 0.510 3.490 17 O -0.545 6.545 18 C -0.138 4.138 19 C -0.117 4.117 20 C 0.088 3.912 21 N -0.494 5.494 22 C 0.136 3.864 23 C -0.237 4.237 24 C -0.018 4.018 25 C -0.245 4.245 26 C 0.511 3.489 27 O -0.549 6.549 28 C 0.142 3.858 29 H 0.251 0.749 30 H 0.012 0.988 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.402 0.598 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.162 0.838 44 H 0.144 0.856 45 H 0.134 0.866 46 H 0.147 0.853 47 H 0.024 0.976 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -30.574 -1.252 31.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.133 4.133 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.376 5.376 16 C 0.296 3.704 17 O -0.423 6.423 18 C -0.179 4.179 19 C -0.156 4.156 20 C -0.033 4.033 21 N -0.205 5.205 22 C 0.008 3.992 23 C -0.260 4.260 24 C -0.040 4.040 25 C -0.266 4.266 26 C 0.313 3.687 27 O -0.431 6.431 28 C 0.015 3.985 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.236 0.764 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.179 0.821 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.165 0.835 47 H 0.042 0.958 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.840 -29.824 -0.427 30.602 hybrid contribution 0.534 0.853 -0.539 1.142 sum 7.374 -28.971 -0.967 29.910 Atomic orbital electron populations 1.69808 1.04891 1.24661 1.57725 1.24797 0.95751 0.97757 1.02454 0.85993 0.78663 0.83570 0.77254 1.20529 1.21758 1.21707 1.19132 0.90540 0.82489 1.42923 0.90470 1.44522 1.01990 0.99738 1.86824 1.21944 0.84674 0.92492 0.98193 1.23010 0.95512 0.98628 1.00345 1.22441 0.98311 0.94031 0.98556 0.90596 1.21462 0.90102 0.91047 0.96554 1.46110 1.41747 1.26555 1.23222 1.20529 0.82957 0.81205 0.85696 1.90713 1.59546 1.71102 1.20926 1.21555 0.99074 0.97160 1.00082 1.21632 0.98205 0.95815 0.99941 1.22089 1.01048 0.87673 0.92511 1.45572 1.30406 1.12507 1.31966 1.21995 0.94378 0.84779 0.98006 1.20665 1.04188 0.99898 1.01272 1.21450 0.91433 0.97034 0.94042 1.22160 1.06192 0.93738 1.04555 1.17204 0.80166 0.90014 0.81359 1.90988 1.52075 1.29668 1.70338 1.21327 0.93439 0.85972 0.97712 0.93777 0.96998 0.87527 0.92144 0.91845 0.91263 0.91716 0.76429 0.88598 0.88271 0.90066 0.90618 0.88897 0.87866 0.82102 0.83795 0.84858 0.83517 0.95840 0.96435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.09 55.49 0.56 -26.35 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.44 3.40 -170.04 -0.58 -16.01 16 10 C 0.15 3.65 5.89 -2.50 -0.01 3.63 16 11 C -0.14 -2.50 6.53 -24.58 -0.16 -2.66 16 12 C -0.11 -1.86 2.97 -88.79 -0.26 -2.12 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 14 C 0.13 1.92 5.02 -4.04 -0.02 1.90 16 15 N -0.73 -8.74 5.47 -60.29 -0.33 -9.07 16 16 C 0.51 6.37 7.83 -10.99 -0.09 6.28 16 17 O -0.55 -9.14 15.98 5.55 0.09 -9.05 16 18 C -0.14 -1.09 5.70 -27.89 -0.16 -1.25 16 19 C -0.12 -1.02 4.83 -26.73 -0.13 -1.15 16 20 C 0.09 0.59 5.34 -4.04 -0.02 0.57 16 21 N -0.49 -3.96 2.58 -119.77 -0.31 -4.27 16 22 C 0.14 0.67 10.28 -16.84 -0.17 0.50 16 23 C -0.24 -1.08 10.01 -39.88 -0.40 -1.48 16 24 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16 25 C -0.24 -2.13 9.99 -39.38 -0.39 -2.52 16 26 C 0.51 5.76 7.41 -15.45 -0.11 5.65 16 27 O -0.55 -8.44 16.64 4.86 0.08 -8.36 16 28 C 0.14 2.86 6.75 -3.07 -0.02 2.84 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.11 2.90 5.88 -51.93 -0.31 2.60 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 41 H 0.09 0.30 8.01 -51.92 -0.42 -0.12 16 42 H 0.10 0.83 7.38 -51.93 -0.38 0.44 16 43 H 0.16 0.24 8.04 -52.49 -0.42 -0.19 16 44 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 45 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 46 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 47 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -37.19 394.36 -9.89 -47.08 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.72 Total: 0.06 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.60 Total: 2.86 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.66 Total: -55.70 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.17 Total: -17.41 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.19 -9.89 -47.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663609100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.518 kcal (2) G-P(sol) polarization free energy of solvation -37.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds