Wall clock time and date at job start Tue Mar 31 2020 19:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35344 * 119.65175 * 2 1 4 4 C 1.40200 * 119.94917 * 179.68798 * 3 2 1 5 5 C 1.36397 * 119.26447 * 0.56136 * 4 3 2 6 6 C 1.50698 * 120.34933 * 179.73860 * 5 4 3 7 7 N 1.46502 * 109.47364 * 94.72171 * 6 5 4 8 8 C 1.34772 * 120.00154 * 180.27682 * 7 6 5 9 9 O 1.21587 * 120.00102 * 354.68255 * 8 7 6 10 10 N 1.34769 * 120.00254 * 174.69107 * 8 7 6 11 11 C 1.46925 * 120.63093 * 4.78305 * 10 8 7 12 12 C 1.52758 * 109.01220 * 233.59147 * 11 10 8 13 13 C 1.53048 * 109.38000 * 305.58525 * 12 11 10 14 14 C 1.53033 * 109.53460 * 61.24442 * 13 12 11 15 15 H 1.08994 * 109.50276 * 58.58383 * 14 13 12 16 16 C 1.50704 * 109.52179 * 178.66749 * 14 13 12 17 17 H 1.07995 * 120.00323 * 34.98665 * 16 14 13 18 18 C 1.37885 * 119.99718 * 214.99176 * 16 14 13 19 19 N 1.31511 * 119.99589 * 174.97065 * 18 16 14 20 20 Si 1.86796 * 120.00104 * 354.96817 * 18 16 14 21 21 H 1.48501 * 109.47168 * 94.90323 * 20 18 16 22 22 H 1.48503 * 109.46956 * 214.90180 * 20 18 16 23 23 H 1.48504 * 109.47293 * 334.90289 * 20 18 16 24 24 C 1.46931 * 120.63381 * 185.07307 * 10 8 7 25 25 C 1.40541 * 119.30332 * 359.46590 * 5 4 3 26 26 O 1.22063 * 119.98213 * 180.27168 * 25 5 4 27 27 N 1.34657 * 120.02903 * 0.25034 * 25 5 4 28 28 C 1.46498 * 119.62310 * 179.97438 * 27 25 5 29 29 H 1.08995 * 109.47160 * 270.01744 * 1 2 3 30 30 H 1.08995 * 109.47286 * 30.01965 * 1 2 3 31 31 H 1.08997 * 109.47544 * 150.02053 * 1 2 3 32 32 H 1.07997 * 120.02686 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.36723 * 180.32590 * 4 3 2 34 34 H 1.09001 * 109.47217 * 334.72482 * 6 5 4 35 35 H 1.09004 * 109.47389 * 214.72515 * 6 5 4 36 36 H 0.97002 * 119.99857 * 0.02562 * 7 6 5 37 37 H 1.08998 * 109.58412 * 353.42835 * 11 10 8 38 38 H 1.09005 * 109.58856 * 113.84645 * 11 10 8 39 39 H 1.09004 * 109.56679 * 185.55294 * 12 11 10 40 40 H 1.08995 * 109.36258 * 65.50060 * 12 11 10 41 41 H 1.09000 * 109.45853 * 301.21790 * 13 12 11 42 42 H 1.08997 * 109.44365 * 181.25234 * 13 12 11 43 43 H 0.97003 * 119.99895 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58531 * 246.15286 * 24 10 8 45 45 H 1.09000 * 109.58690 * 6.43245 * 24 10 8 46 46 H 1.09001 * 109.46996 * 0.02562 * 28 27 25 47 47 H 1.08999 * 109.46790 * 119.99922 * 28 27 25 48 48 H 1.09002 * 109.47525 * 239.99985 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1765 1.1762 0.0000 4 6 3.5785 1.1835 0.0066 5 6 4.2515 -0.0029 0.0013 6 6 5.7583 -0.0236 0.0023 7 7 6.2441 -0.1506 1.3786 8 6 7.5686 -0.1846 1.6252 9 8 8.3587 -0.2074 0.7013 10 7 8.0175 -0.1935 2.8960 11 6 7.0765 -0.2719 4.0217 12 6 7.3536 0.8824 4.9831 13 6 8.8279 0.8592 5.3931 14 6 9.7067 1.0396 4.1532 15 1 9.4593 1.9826 3.6660 16 6 11.1574 1.0495 4.5613 17 1 11.4931 0.4268 5.3773 18 6 12.0560 1.8537 3.8928 19 7 13.3002 1.9379 4.3105 20 14 11.5063 2.8233 2.3938 21 1 11.1226 4.1973 2.8065 22 1 12.6201 2.8937 1.4140 23 1 10.3394 2.1500 1.7693 24 6 9.4567 -0.1186 3.1822 25 6 3.5248 -1.2059 0.0008 26 8 4.1145 -2.2747 0.0011 27 7 2.1785 -1.1800 0.0004 28 6 1.4300 -2.4393 -0.0007 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6313 2.1084 0.0004 33 1 4.1196 2.1181 0.0120 34 1 6.1347 0.9028 -0.4317 35 1 6.1105 -0.8703 -0.5870 36 1 5.6125 -0.2066 2.1126 37 1 6.0547 -0.1985 3.6496 38 1 7.2101 -1.2192 4.5443 39 1 6.7278 0.7774 5.8695 40 1 7.1283 1.8269 4.4881 41 1 9.0584 -0.0955 5.8659 42 1 9.0217 1.6690 6.0964 43 1 13.9324 2.5039 3.8404 44 1 9.7883 -1.0531 3.6349 45 1 10.0050 0.0535 2.2560 46 1 2.1278 -3.2767 -0.0006 47 1 0.8024 -2.4896 0.8891 48 1 0.8029 -2.4885 -0.8909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595591057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:16 Heat of formation + Delta-G solvation = -55.423647 kcal Electronic energy + Delta-G solvation = -29111.354519 eV Core-core repulsion = 25165.642008 eV Total energy + Delta-G solvation = -3945.712511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.55710 -41.36806 -38.73350 -38.31284 -36.92254 -35.42038 -34.71517 -33.50153 -32.65784 -32.12452 -29.69803 -28.59070 -27.11362 -26.54066 -25.20644 -23.70951 -23.39510 -22.76703 -21.69094 -20.51505 -19.49269 -18.79757 -18.59094 -17.79467 -17.44014 -17.03353 -16.98488 -16.64106 -16.32510 -15.60182 -15.35611 -15.26583 -15.16021 -14.89322 -14.68900 -14.50956 -14.41306 -14.02538 -13.95112 -13.83738 -13.81133 -13.57874 -13.40133 -13.08056 -12.84113 -12.80581 -12.57563 -12.44141 -12.27512 -12.04311 -11.78702 -11.64262 -11.39500 -11.11008 -11.09443 -11.00953 -10.89315 -10.77352 -10.25296 -9.40231 -8.90136 -8.34731 -6.36351 -0.26693 0.85893 1.24387 1.33339 1.48722 1.59443 1.71517 2.12423 2.30090 2.55001 3.01671 3.07534 3.50166 3.57412 3.74742 3.96488 4.00729 4.12043 4.14795 4.23391 4.25153 4.35977 4.44377 4.54452 4.62223 4.65034 4.66636 4.71741 4.75296 4.77212 4.79444 4.94942 4.96045 5.01988 5.07177 5.11498 5.20733 5.22400 5.35441 5.43712 5.44939 5.58403 5.63509 5.64924 5.71484 5.99474 6.05830 6.29851 6.72035 6.95640 6.99910 7.30079 7.54318 8.81731 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.002714 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.157053 B =10314.994188 C =10541.701240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.179 3.821 3 C -0.240 4.240 4 C 0.035 3.965 5 C -0.278 4.278 6 C 0.211 3.789 7 N -0.726 5.726 8 C 0.695 3.305 9 O -0.644 6.644 10 N -0.628 5.628 11 C 0.111 3.889 12 C -0.125 4.125 13 C -0.100 4.100 14 C 0.007 3.993 15 H 0.024 0.976 16 C -0.509 4.509 17 H 0.044 0.956 18 C 0.022 3.978 19 N -0.941 5.941 20 Si 0.930 3.070 21 H -0.263 1.263 22 H -0.290 1.290 23 H -0.263 1.263 24 C 0.141 3.859 25 C 0.508 3.492 26 O -0.598 6.598 27 N -0.495 5.495 28 C 0.045 3.955 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.184 0.816 33 H 0.154 0.846 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.404 0.596 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.662 -0.777 -6.843 39.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 C -0.262 4.262 4 C 0.013 3.987 5 C -0.282 4.282 6 C 0.087 3.913 7 N -0.384 5.384 8 C 0.397 3.603 9 O -0.527 6.527 10 N -0.364 5.364 11 C -0.010 4.010 12 C -0.163 4.163 13 C -0.138 4.138 14 C -0.013 4.013 15 H 0.042 0.958 16 C -0.547 4.547 17 H 0.062 0.938 18 C -0.176 4.176 19 N -0.581 5.581 20 Si 0.756 3.244 21 H -0.188 1.188 22 H -0.216 1.216 23 H -0.187 1.187 24 C 0.017 3.983 25 C 0.312 3.688 26 O -0.484 6.484 27 N -0.204 5.204 28 C -0.095 4.095 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.109 0.891 32 H 0.201 0.799 33 H 0.172 0.828 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.242 0.758 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.126 0.874 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -37.601 -1.453 -7.542 38.377 hybrid contribution 1.013 0.101 -0.495 1.132 sum -36.587 -1.352 -8.037 37.484 Atomic orbital electron populations 1.21325 0.84540 1.06608 1.05829 1.21419 0.97184 0.84312 0.90189 1.20921 0.93099 0.98608 1.13560 1.21754 0.95226 0.97503 0.84251 1.20336 0.94828 0.93511 1.19552 1.19415 0.88932 1.00874 0.82078 1.45205 1.04055 1.79385 1.09767 1.16172 0.83108 0.77779 0.83257 1.90843 1.56488 1.60582 1.44768 1.47624 1.08245 1.76413 1.04128 1.21775 0.92157 1.00073 0.87042 1.21868 0.96572 0.98030 0.99801 1.21447 0.94028 1.01357 0.96977 1.19440 0.94271 0.93620 0.93945 0.95763 1.21207 0.92670 1.24288 1.16562 0.93779 1.25776 0.94883 0.97585 0.99339 1.70019 1.05127 1.41058 1.41904 0.85991 0.78350 0.79780 0.80327 1.18770 1.21615 1.18739 1.21834 0.78034 0.99613 0.98783 1.17054 0.81791 0.90604 0.79317 1.90956 1.68402 1.33360 1.55694 1.45471 1.07328 1.09210 1.58419 1.22420 0.97225 0.84200 1.05698 0.87356 0.86749 0.89066 0.79869 0.82805 0.90918 0.94271 0.75779 0.88692 0.90413 0.87468 0.92124 0.92621 0.92455 0.92469 0.92735 0.93686 0.90628 0.87408 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.30 9.47 71.23 0.67 0.97 16 2 C 0.18 1.25 6.65 41.28 0.27 1.52 16 3 C -0.24 -1.72 9.61 22.08 0.21 -1.51 16 4 C 0.04 0.49 9.73 22.32 0.22 0.70 16 5 C -0.28 -6.28 5.27 -19.73 -0.10 -6.39 16 6 C 0.21 6.47 5.55 85.63 0.48 6.95 16 7 N -0.73 -23.53 5.46 -482.30 -2.63 -26.16 16 8 C 0.70 29.41 8.29 179.06 1.49 30.89 16 9 O -0.64 -33.77 15.79 -3.99 -0.06 -33.83 16 10 N -0.63 -24.86 2.98 -837.75 -2.50 -27.36 16 11 C 0.11 3.11 6.40 86.22 0.55 3.66 16 12 C -0.12 -3.40 6.07 30.53 0.19 -3.22 16 13 C -0.10 -3.76 5.15 30.62 0.16 -3.61 16 14 C 0.01 0.34 1.79 -11.46 -0.02 0.32 16 15 H 0.02 1.21 5.59 -2.39 -0.01 1.19 16 16 C -0.51 -29.53 8.87 25.60 0.23 -29.30 16 17 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 18 C 0.02 1.35 5.47 84.66 0.46 1.82 16 19 N -0.94 -60.29 13.96 21.45 0.30 -59.99 16 20 Si 0.93 48.59 26.63 68.60 1.83 50.42 16 21 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 23 H -0.26 -14.14 5.98 99.48 0.60 -13.55 16 24 C 0.14 6.68 5.50 86.36 0.48 7.16 16 25 C 0.51 12.57 7.40 84.82 0.63 13.19 16 26 O -0.60 -20.58 15.59 -5.52 -0.09 -20.67 16 27 N -0.50 -7.07 2.99 -659.76 -1.97 -9.04 16 28 C 0.04 0.40 9.35 127.77 1.19 1.59 16 29 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.11 -0.64 8.07 -2.39 -0.02 -0.66 16 31 H 0.09 -0.35 6.48 -2.39 -0.02 -0.37 16 32 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.07 2.15 8.06 -2.39 -0.02 2.13 16 35 H 0.04 1.48 7.76 -2.38 -0.02 1.46 16 36 H 0.40 10.60 5.92 -92.71 -0.55 10.05 16 37 H 0.10 2.04 5.57 -2.39 -0.01 2.02 16 38 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 44 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.04 2.47 5.93 -2.39 -0.01 2.45 16 46 H 0.07 1.18 6.86 -2.39 -0.02 1.16 16 47 H 0.11 0.32 8.07 -2.39 -0.02 0.30 16 48 H 0.11 0.33 7.35 -2.39 -0.02 0.31 16 Total: -1.00 -92.67 379.28 2.29 -90.38 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.32 Total: 11.49 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 7.10 Total: 24.77 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -6.80 Total: -122.55 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -0.15 Total: -54.50 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.83 Total: 50.42 kcal Total: -92.67 2.29 -90.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595591057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.959 kcal (2) G-P(sol) polarization free energy of solvation -92.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds