Wall clock time and date at job start Tue Mar 31 2020 18:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47206 * 2 1 4 4 C 1.50693 * 109.47542 * 239.99375 * 2 1 3 5 5 H 1.07999 * 120.00337 * 240.00309 * 4 2 1 6 6 C 1.37884 * 119.99959 * 59.99953 * 4 2 1 7 7 N 1.31511 * 119.99723 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00102 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47295 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46849 * 120.00314 * 8 6 4 11 11 H 1.48498 * 109.47077 * 239.99983 * 8 6 4 12 12 C 1.53004 * 109.47026 * 119.99524 * 2 1 3 13 13 N 1.46503 * 109.47227 * 300.00445 * 12 2 1 14 14 S 1.65600 * 120.00236 * 165.00074 * 13 12 2 15 15 O 1.42098 * 104.27612 * 308.92364 * 14 13 12 16 16 O 1.42098 * 104.27735 * 181.06851 * 14 13 12 17 17 C 1.81401 * 104.45114 * 64.99593 * 14 13 12 18 18 C 1.52992 * 109.47230 * 179.97438 * 17 14 13 19 19 H 1.09003 * 109.49440 * 304.97640 * 18 17 14 20 20 C 1.53095 * 109.48331 * 184.94017 * 18 17 14 21 21 C 1.53178 * 109.16325 * 182.41120 * 20 18 17 22 22 C 1.53197 * 109.04436 * 56.98235 * 21 20 18 23 23 C 1.53095 * 109.15160 * 303.02521 * 22 21 20 24 24 C 1.52997 * 109.48017 * 297.61537 * 23 22 21 25 25 C 1.53000 * 109.48036 * 177.58933 * 23 22 21 26 26 O 1.42906 * 109.42203 * 57.60269 * 23 22 21 27 27 H 1.08995 * 109.47618 * 300.00657 * 1 2 3 28 28 H 1.09005 * 109.46970 * 60.00304 * 1 2 3 29 29 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47242 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46471 * 299.99424 * 3 2 1 32 32 H 1.09000 * 109.47038 * 59.99554 * 3 2 1 33 33 H 0.97004 * 119.99953 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47535 * 180.02562 * 12 2 1 35 35 H 1.09003 * 109.47210 * 59.99710 * 12 2 1 36 36 H 0.97002 * 119.99690 * 344.99294 * 13 12 2 37 37 H 1.09007 * 109.46815 * 59.99973 * 17 14 13 38 38 H 1.09005 * 109.47002 * 300.00346 * 17 14 13 39 39 H 1.08997 * 109.52214 * 302.32081 * 20 18 17 40 40 H 1.09006 * 109.51681 * 62.44178 * 20 18 17 41 41 H 1.08998 * 109.53905 * 176.85191 * 21 20 18 42 42 H 1.09001 * 109.54307 * 297.02832 * 21 20 18 43 43 H 1.08994 * 109.53669 * 183.11861 * 22 21 20 44 44 H 1.09003 * 109.51673 * 62.91959 * 22 21 20 45 45 H 1.09002 * 109.47153 * 299.97469 * 24 23 22 46 46 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.47261 * 59.97641 * 24 23 22 48 48 H 1.09001 * 109.47172 * 180.02562 * 25 23 22 49 49 H 1.09000 * 109.47351 * 300.02411 * 25 23 22 50 50 H 1.09002 * 109.47042 * 60.02581 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8299 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 3.1476 -2.2866 -3.6036 10 1 1.1680 -1.5870 -4.8164 11 1 3.1474 -0.1861 -4.8160 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0305 2.4455 14 16 1.6255 -0.7779 3.9214 15 8 1.0209 -2.0452 3.7031 16 8 1.0522 0.1624 4.8194 17 6 3.4004 -0.9666 4.2448 18 6 3.6022 -1.6527 5.5973 19 1 3.0771 -1.0927 6.3712 20 6 5.0964 -1.7014 5.9273 21 6 5.2946 -2.4427 7.2530 22 6 4.6782 -3.8406 7.1412 23 6 3.2002 -3.7091 6.7643 24 6 2.4558 -2.9608 7.8718 25 6 2.5917 -5.1023 6.5917 26 8 3.0851 -2.9836 5.5384 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.7096 1.1615 -3.4845 34 1 3.1300 -0.7208 1.2497 35 1 1.6766 -1.7488 1.2495 36 1 1.1849 0.8646 2.3729 37 1 3.8730 0.0155 4.2619 38 1 3.8505 -1.5729 3.4587 39 1 5.6277 -2.2263 5.1334 40 1 5.4832 -0.6861 6.0151 41 1 6.3600 -2.5299 7.4661 42 1 4.8062 -1.8906 8.0560 43 1 4.7656 -4.3552 8.0980 44 1 5.2011 -4.4088 6.3718 45 1 2.5440 -3.5141 8.8068 46 1 1.4036 -2.8669 7.6031 47 1 2.8894 -1.9683 7.9946 48 1 1.5395 -5.0085 6.3229 49 1 3.1221 -5.6353 5.8026 50 1 2.6799 -5.6556 7.5266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885231201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:13 Heat of formation + Delta-G solvation = -139.290148 kcal Electronic energy + Delta-G solvation = -28758.492085 eV Core-core repulsion = 24912.294050 eV Total energy + Delta-G solvation = -3846.198035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 8.02 seconds Orbital eigenvalues (eV) -40.34110 -36.96806 -36.60882 -35.53727 -34.69245 -33.93721 -33.17329 -30.56786 -30.43635 -27.71770 -26.83037 -25.66195 -25.49525 -24.46981 -23.16628 -22.05826 -19.57403 -19.09696 -18.75137 -17.40899 -16.74981 -16.29967 -15.96983 -15.72207 -15.60418 -15.28833 -14.72914 -14.50330 -14.06659 -13.93825 -13.50022 -13.40709 -13.15763 -13.03220 -12.90170 -12.35058 -12.29303 -12.19900 -12.14681 -11.93563 -11.79812 -11.70439 -11.55605 -11.50472 -11.42923 -11.26222 -11.17385 -11.07610 -10.91871 -10.63191 -10.58450 -10.38097 -10.27776 -10.14219 -9.62847 -9.54388 -9.29440 -8.76654 -8.71187 -8.34976 -5.99296 -4.09994 0.57992 3.15668 3.27966 3.29272 3.36844 3.40536 4.01051 4.32040 4.40592 4.44971 4.46741 4.49848 4.59451 4.71611 4.81638 4.94402 5.00162 5.15990 5.26667 5.27240 5.29704 5.44346 5.47323 5.56691 5.59064 5.64088 5.68639 5.73845 5.81706 5.83698 5.88125 6.07379 6.12676 6.21238 6.49213 6.54012 6.79330 6.95861 7.02864 7.04099 7.11908 7.39074 7.59280 7.62875 7.72936 8.06888 8.18635 8.42524 8.90704 9.55695 11.01858 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.003031 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.682163 B = 9237.043954 C = 9631.620082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.125 3.875 13 N -1.111 6.111 14 S 2.612 3.388 15 O -0.940 6.940 16 O -0.974 6.974 17 C -0.633 4.633 18 C 0.100 3.900 19 H 0.073 0.927 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.143 4.143 23 C 0.111 3.889 24 C -0.188 4.188 25 C -0.140 4.140 26 O -0.363 6.363 27 H 0.010 0.990 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.008 0.992 33 H 0.259 0.741 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.415 0.585 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 -5.264 19.889 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.061 3.939 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 C 0.000 4.000 13 N -0.874 5.874 14 S 2.703 3.297 15 O -0.930 6.930 16 O -0.965 6.965 17 C -0.760 4.760 18 C 0.041 3.959 19 H 0.090 0.910 20 C -0.180 4.180 21 C -0.163 4.163 22 C -0.181 4.181 23 C 0.072 3.928 24 C -0.245 4.245 25 C -0.197 4.197 26 O -0.283 6.283 27 H 0.029 0.971 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.354 -5.689 20.116 22.161 hybrid contribution 1.131 0.231 -0.968 1.506 sum 8.485 -5.458 19.149 21.644 Atomic orbital electron populations 1.21808 0.97568 0.99375 1.00184 1.18257 0.93046 0.92541 0.90034 1.21842 0.98347 0.98549 1.00255 1.21063 1.31491 1.12075 0.90011 0.92380 1.24895 0.94889 0.94931 0.98854 1.69826 1.36639 1.22751 1.23065 0.86537 0.78635 0.79687 0.83108 1.19788 1.21069 1.21151 1.21668 0.96860 0.96361 0.85120 1.55586 1.78194 1.30588 1.22993 1.04834 0.76984 0.74486 0.73400 1.93596 1.72004 1.43226 1.84167 1.93553 1.75174 1.62961 1.64789 1.30719 1.30457 1.09474 1.05364 1.21597 0.95590 0.84732 0.94030 0.90951 1.22148 0.95696 1.01747 0.98413 1.21677 1.01292 0.96003 0.97375 1.22208 0.95835 0.97591 1.02444 1.21536 0.94200 0.92767 0.84327 1.22549 1.01760 1.01177 0.99012 1.21774 1.02214 0.93414 1.02277 1.88117 1.81585 1.24620 1.33945 0.97096 0.89813 0.95343 0.95491 0.89589 0.97260 0.93081 0.93312 0.91348 0.74904 0.83870 0.83912 0.90401 0.90494 0.91200 0.91411 0.90779 0.90776 0.91151 0.91261 0.91819 0.91177 0.91545 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.08 37.16 0.30 -2.83 16 2 C 0.06 1.46 0.51 -155.66 -0.08 1.38 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.09 8.01 -34.44 -0.28 -13.37 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.70 9.35 55.43 0.52 -23.18 16 8 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.47 4.96 -4.04 -0.02 2.45 16 13 N -1.11 -19.28 5.22 -10.61 -0.06 -19.34 16 14 S 2.61 42.61 5.31 -107.50 -0.57 42.04 16 15 O -0.94 -18.61 17.02 -59.90 -1.02 -19.63 16 16 O -0.97 -17.62 18.08 -57.54 -1.04 -18.66 16 17 C -0.63 -7.69 5.77 37.15 0.21 -7.47 16 18 C 0.10 1.17 2.31 -26.69 -0.06 1.11 16 19 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 20 C -0.14 -1.29 5.42 -26.59 -0.14 -1.44 16 21 C -0.13 -0.98 5.71 -26.54 -0.15 -1.13 16 22 C -0.14 -1.18 4.92 -26.58 -0.13 -1.31 16 23 C 0.11 1.15 1.11 -90.57 -0.10 1.05 16 24 C -0.19 -1.75 7.93 37.16 0.29 -1.45 16 25 C -0.14 -1.34 8.85 37.16 0.33 -1.01 16 26 O -0.36 -4.88 9.21 -36.18 -0.33 -5.21 16 27 H 0.01 0.22 7.20 -51.93 -0.37 -0.15 16 28 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 32 H 0.01 0.17 6.60 -51.93 -0.34 -0.17 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.41 7.69 -51.93 -0.40 1.01 16 36 H 0.41 7.03 6.44 -34.47 -0.22 6.81 16 37 H 0.14 1.34 8.14 -51.92 -0.42 0.92 16 38 H 0.14 1.66 8.14 -51.92 -0.42 1.23 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.49 6.62 -51.93 -0.34 0.14 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.56 4.98 -51.93 -0.26 0.30 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -31.49 388.07 -10.07 -41.56 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.78 Total: 6.07 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 0.38 Total: -25.03 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.46 Total: -42.52 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -2.39 Total: -43.50 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 42.61 SS G_CDS: -0.57 Total: 42.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.49 -10.07 -41.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885231201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.728 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.02 seconds