Wall clock time and date at job start Tue Mar 31 2020 18:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47206 * 2 1 4 4 C 1.50693 * 109.47542 * 239.99375 * 2 1 3 5 5 H 1.07999 * 120.00337 * 240.00309 * 4 2 1 6 6 C 1.37884 * 119.99959 * 59.99953 * 4 2 1 7 7 N 1.31511 * 119.99723 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00102 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47295 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46849 * 120.00314 * 8 6 4 11 11 H 1.48498 * 109.47077 * 239.99983 * 8 6 4 12 12 C 1.53004 * 109.47026 * 119.99524 * 2 1 3 13 13 N 1.46503 * 109.47227 * 300.00445 * 12 2 1 14 14 S 1.65600 * 120.00236 * 165.00074 * 13 12 2 15 15 O 1.42098 * 104.27612 * 308.92364 * 14 13 12 16 16 O 1.42098 * 104.27735 * 181.06851 * 14 13 12 17 17 C 1.81401 * 104.45114 * 64.99593 * 14 13 12 18 18 C 1.52992 * 109.47230 * 179.97438 * 17 14 13 19 19 H 1.09003 * 109.49440 * 304.97640 * 18 17 14 20 20 C 1.53095 * 109.48331 * 184.94017 * 18 17 14 21 21 C 1.53178 * 109.16325 * 182.41120 * 20 18 17 22 22 C 1.53197 * 109.04436 * 56.98235 * 21 20 18 23 23 C 1.53095 * 109.15160 * 303.02521 * 22 21 20 24 24 C 1.52997 * 109.48017 * 297.61537 * 23 22 21 25 25 C 1.53000 * 109.48036 * 177.58933 * 23 22 21 26 26 O 1.42906 * 109.42203 * 57.60269 * 23 22 21 27 27 H 1.08995 * 109.47618 * 300.00657 * 1 2 3 28 28 H 1.09005 * 109.46970 * 60.00304 * 1 2 3 29 29 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47242 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46471 * 299.99424 * 3 2 1 32 32 H 1.09000 * 109.47038 * 59.99554 * 3 2 1 33 33 H 0.97004 * 119.99953 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47535 * 180.02562 * 12 2 1 35 35 H 1.09003 * 109.47210 * 59.99710 * 12 2 1 36 36 H 0.97002 * 119.99690 * 344.99294 * 13 12 2 37 37 H 1.09007 * 109.46815 * 59.99973 * 17 14 13 38 38 H 1.09005 * 109.47002 * 300.00346 * 17 14 13 39 39 H 1.08997 * 109.52214 * 302.32081 * 20 18 17 40 40 H 1.09006 * 109.51681 * 62.44178 * 20 18 17 41 41 H 1.08998 * 109.53905 * 176.85191 * 21 20 18 42 42 H 1.09001 * 109.54307 * 297.02832 * 21 20 18 43 43 H 1.08994 * 109.53669 * 183.11861 * 22 21 20 44 44 H 1.09003 * 109.51673 * 62.91959 * 22 21 20 45 45 H 1.09002 * 109.47153 * 299.97469 * 24 23 22 46 46 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.47261 * 59.97641 * 24 23 22 48 48 H 1.09001 * 109.47172 * 180.02562 * 25 23 22 49 49 H 1.09000 * 109.47351 * 300.02411 * 25 23 22 50 50 H 1.09002 * 109.47042 * 60.02581 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8299 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 3.1476 -2.2866 -3.6036 10 1 1.1680 -1.5870 -4.8164 11 1 3.1474 -0.1861 -4.8160 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0305 2.4455 14 16 1.6255 -0.7779 3.9214 15 8 1.0209 -2.0452 3.7031 16 8 1.0522 0.1624 4.8194 17 6 3.4004 -0.9666 4.2448 18 6 3.6022 -1.6527 5.5973 19 1 3.0771 -1.0927 6.3712 20 6 5.0964 -1.7014 5.9273 21 6 5.2946 -2.4427 7.2530 22 6 4.6782 -3.8406 7.1412 23 6 3.2002 -3.7091 6.7643 24 6 2.4558 -2.9608 7.8718 25 6 2.5917 -5.1023 6.5917 26 8 3.0851 -2.9836 5.5384 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.7096 1.1615 -3.4845 34 1 3.1300 -0.7208 1.2497 35 1 1.6766 -1.7488 1.2495 36 1 1.1849 0.8646 2.3729 37 1 3.8730 0.0155 4.2619 38 1 3.8505 -1.5729 3.4587 39 1 5.6277 -2.2263 5.1334 40 1 5.4832 -0.6861 6.0151 41 1 6.3600 -2.5299 7.4661 42 1 4.8062 -1.8906 8.0560 43 1 4.7656 -4.3552 8.0980 44 1 5.2011 -4.4088 6.3718 45 1 2.5440 -3.5141 8.8068 46 1 1.4036 -2.8669 7.6031 47 1 2.8894 -1.9683 7.9946 48 1 1.5395 -5.0085 6.3229 49 1 3.1221 -5.6353 5.8026 50 1 2.6799 -5.6556 7.5266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885231201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:58 Heat of formation + Delta-G solvation = -160.155284 kcal Electronic energy + Delta-G solvation = -28759.396865 eV Core-core repulsion = 24912.294050 eV Total energy + Delta-G solvation = -3847.102815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11028 -38.62998 -38.05152 -36.93855 -35.49685 -34.91295 -34.64580 -32.31965 -31.35489 -28.43954 -27.58426 -27.50759 -27.36437 -26.20766 -23.93484 -22.82103 -20.75924 -20.32705 -20.22590 -18.79303 -17.67622 -17.64314 -17.43857 -17.05221 -16.66432 -16.48785 -16.00698 -15.53174 -15.30854 -15.11649 -14.83476 -14.73039 -14.17507 -14.07014 -13.95509 -13.64681 -13.36550 -13.28121 -13.15990 -13.07934 -13.02914 -12.98586 -12.89261 -12.85993 -12.72813 -12.65547 -12.45484 -12.31112 -12.24843 -12.06611 -11.93487 -11.87449 -11.56862 -11.43071 -11.08394 -11.05134 -10.64448 -10.42020 -10.33668 -10.10770 -7.97257 -6.13554 -0.68389 1.44273 1.48620 1.57423 1.85585 2.46565 2.49530 2.83068 3.26446 3.30767 3.47951 3.74440 3.79913 3.84588 3.94860 4.02358 4.16718 4.24946 4.29765 4.35119 4.57882 4.61313 4.63852 4.68116 4.77382 4.78016 4.83933 4.85407 4.91379 5.00912 5.02877 5.09863 5.11517 5.12991 5.14741 5.22907 5.25136 5.29107 5.34231 5.47551 5.53725 5.71378 5.72702 6.11702 6.20612 6.24538 6.30579 6.48366 6.93916 7.54333 9.01838 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.003031 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.682163 B = 9237.043954 C = 9631.620082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.052 3.948 3 C -0.124 4.124 4 C -0.523 4.523 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.946 3.054 9 H -0.269 1.269 10 H -0.288 1.288 11 H -0.282 1.282 12 C 0.134 3.866 13 N -1.113 6.113 14 S 2.611 3.389 15 O -0.985 6.985 16 O -0.996 6.996 17 C -0.608 4.608 18 C 0.087 3.913 19 H 0.075 0.925 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.139 4.139 23 C 0.097 3.903 24 C -0.189 4.189 25 C -0.141 4.141 26 O -0.395 6.395 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.257 0.743 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.416 0.584 37 H 0.180 0.820 38 H 0.153 0.847 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.048 0.952 49 H 0.059 0.941 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.754 -5.337 21.629 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 C -0.182 4.182 4 C -0.562 4.562 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.773 3.227 9 H -0.193 1.193 10 H -0.215 1.215 11 H -0.208 1.208 12 C 0.009 3.991 13 N -0.874 5.874 14 S 2.708 3.292 15 O -0.975 6.975 16 O -0.987 6.987 17 C -0.740 4.740 18 C 0.028 3.972 19 H 0.093 0.907 20 C -0.178 4.178 21 C -0.163 4.163 22 C -0.176 4.176 23 C 0.059 3.941 24 C -0.246 4.246 25 C -0.198 4.198 26 O -0.316 6.316 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.252 0.748 37 H 0.197 0.803 38 H 0.171 0.829 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.887 -5.754 21.846 24.660 hybrid contribution 0.321 0.225 -1.442 1.494 sum 10.208 -5.530 20.404 23.476 Atomic orbital electron populations 1.21716 0.98564 0.98305 0.99768 1.18309 0.92343 0.93371 0.90912 1.21691 0.98674 0.97766 1.00041 1.21407 1.31372 1.12144 0.91288 0.92610 1.25536 0.95273 0.95615 1.01255 1.69958 1.37379 1.23657 1.23318 0.85689 0.77949 0.78846 0.80193 1.19287 1.21474 1.20828 1.21403 0.98098 0.95197 0.84451 1.55448 1.78871 1.30308 1.22754 1.04641 0.78920 0.73081 0.72580 1.93542 1.74798 1.44719 1.84485 1.93519 1.77113 1.63260 1.64814 1.30527 1.25034 1.12010 1.06460 1.21851 0.97676 0.84281 0.93414 0.90688 1.22165 0.93248 1.03196 0.99151 1.21719 1.02444 0.95381 0.96780 1.22180 0.93897 0.98315 1.03249 1.21829 0.96031 0.92575 0.83686 1.22571 1.00366 1.01852 0.99778 1.21830 1.00728 0.93789 1.03496 1.88086 1.82240 1.25461 1.35769 0.95466 0.92166 0.96664 0.94775 0.92439 0.94806 0.93302 0.90874 0.92857 0.74780 0.80275 0.82870 0.90612 0.88552 0.89402 0.90634 0.88710 0.91324 0.88756 0.93317 0.91282 0.93277 0.92140 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.08 71.98 0.58 -5.48 16 2 C 0.05 2.42 0.51 -52.93 -0.03 2.39 16 3 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 4 C -0.52 -26.97 8.01 25.60 0.21 -26.76 16 5 H 0.06 2.83 7.74 -2.91 -0.02 2.81 16 6 C 0.02 1.18 5.15 84.66 0.44 1.61 16 7 N -0.90 -49.06 9.35 21.45 0.20 -48.86 16 8 Si 0.95 42.21 29.54 68.60 2.03 44.24 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.13 5.18 4.96 86.38 0.43 5.61 16 13 N -1.11 -37.58 5.22 -187.47 -0.98 -38.56 16 14 S 2.61 83.75 5.31 -56.49 -0.30 83.45 16 15 O -0.99 -39.91 17.02 -125.39 -2.13 -42.05 16 16 O -1.00 -35.61 18.08 -127.65 -2.31 -37.92 16 17 C -0.61 -13.25 5.77 71.98 0.41 -12.84 16 18 C 0.09 1.85 2.31 30.62 0.07 1.92 16 19 H 0.08 1.53 6.34 -2.39 -0.02 1.52 16 20 C -0.14 -2.06 5.42 30.69 0.17 -1.90 16 21 C -0.13 -1.50 5.71 30.72 0.18 -1.33 16 22 C -0.14 -1.90 4.92 30.69 0.15 -1.75 16 23 C 0.10 1.89 1.11 -10.76 -0.01 1.88 16 24 C -0.19 -3.25 7.93 71.98 0.57 -2.68 16 25 C -0.14 -2.63 8.85 71.98 0.64 -1.99 16 26 O -0.39 -10.28 9.21 -148.07 -1.36 -11.65 16 27 H 0.03 1.16 7.20 -2.39 -0.02 1.15 16 28 H 0.06 3.18 6.07 -2.38 -0.01 3.17 16 29 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 2.86 6.07 -2.38 -0.01 2.84 16 32 H 0.03 1.27 6.60 -2.39 -0.02 1.25 16 33 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 2.20 7.69 -2.39 -0.02 2.19 16 36 H 0.42 13.66 6.44 -96.74 -0.62 13.04 16 37 H 0.18 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.80 6.62 -2.39 -0.02 0.78 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.09 4.98 -2.38 -0.01 1.08 16 48 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.14 388.07 -0.19 -69.33 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.29 Total: 28.18 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 4.38 Total: -46.15 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -0.78 Total: -87.43 kcal Atomic # 8 Polarization: -85.81 SS G_CDS: -5.81 Total: -91.61 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 83.75 SS G_CDS: -0.30 Total: 83.45 kcal Total: -69.14 -0.19 -69.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885231201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.829 kcal (2) G-P(sol) polarization free energy of solvation -69.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds