Wall clock time and date at job start Tue Mar 31 2020 19:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38351 * 119.40471 * 2 1 4 4 C 1.38338 * 119.45684 * 179.97438 * 3 2 1 5 5 C 1.39987 * 118.34724 * 0.02562 * 4 3 2 6 6 C 1.47532 * 120.59386 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99728 * 179.97438 * 6 5 4 8 8 N 1.34770 * 120.00220 * 0.02562 * 6 5 4 9 9 C 1.46498 * 120.00060 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47096 * 35.00417 * 9 8 6 11 11 C 1.53001 * 109.47464 * 275.00058 * 9 8 6 12 12 C 1.53006 * 109.47049 * 155.00064 * 9 8 6 13 13 H 1.08995 * 109.52527 * 59.92072 * 12 9 8 14 14 C 1.53037 * 109.49495 * 180.02562 * 12 9 8 15 15 C 1.53041 * 109.53859 * 181.31592 * 14 12 9 16 16 C 1.53197 * 109.31421 * 298.63487 * 15 14 12 17 17 N 1.46930 * 108.89198 * 54.56094 * 16 15 14 18 18 C 1.36936 * 120.63124 * 126.46889 * 17 16 15 19 19 H 1.07996 * 119.99570 * 332.67082 * 18 17 16 20 20 C 1.38808 * 120.00000 * 152.67179 * 18 17 16 21 21 N 1.31611 * 120.00187 * 159.42039 * 20 18 17 22 22 Si 1.86807 * 120.00080 * 339.42073 * 20 18 17 23 23 H 1.48502 * 109.46912 * 92.90377 * 22 20 18 24 24 H 1.48493 * 109.47014 * 212.90653 * 22 20 18 25 25 H 1.48501 * 109.46860 * 332.90463 * 22 20 18 26 26 C 1.46971 * 118.71452 * 306.64526 * 17 16 15 27 27 C 1.40274 * 118.80599 * 0.27391 * 5 4 3 28 28 O 1.35430 * 119.79868 * 179.70662 * 27 5 4 29 29 N 1.31879 * 119.40459 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47232 * 89.99934 * 1 2 3 31 31 H 1.08995 * 109.47327 * 210.00351 * 1 2 3 32 32 H 1.09004 * 109.46945 * 330.00012 * 1 2 3 33 33 H 1.08000 * 120.27473 * 359.97438 * 3 2 1 34 34 H 1.08006 * 120.82424 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00282 * 359.97438 * 8 6 5 36 36 H 1.09007 * 109.46660 * 300.00302 * 11 9 8 37 37 H 1.08993 * 109.46910 * 59.99907 * 11 9 8 38 38 H 1.08999 * 109.47583 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.46391 * 61.29742 * 14 12 9 40 40 H 1.09001 * 109.46120 * 301.33176 * 14 12 9 41 41 H 1.09000 * 109.50091 * 178.68175 * 15 14 12 42 42 H 1.09006 * 109.52414 * 58.59740 * 15 14 12 43 43 H 1.08995 * 109.58974 * 174.42029 * 16 15 14 44 44 H 1.09002 * 109.58120 * 294.70654 * 16 15 14 45 45 H 0.97006 * 120.00623 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.46097 * 293.57176 * 26 17 16 47 47 H 1.09000 * 109.59239 * 173.21544 * 26 17 16 48 48 H 0.96699 * 114.00424 * 89.99893 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.2355 -0.0249 0.0005 6 6 5.7097 -0.0814 0.0005 7 8 6.2769 -1.1569 0.0010 8 7 6.4278 1.0591 0.0010 9 6 7.8917 1.0030 0.0016 10 1 8.2227 0.1480 -0.5880 11 6 8.3961 0.8575 1.4388 12 6 8.4517 2.2900 -0.6075 13 1 8.1200 3.1457 -0.0195 14 6 9.9809 2.2317 -0.6078 15 6 10.5426 3.5323 -1.1867 16 6 10.0646 3.6909 -2.6335 17 7 8.5983 3.6013 -2.6626 18 6 7.8505 4.5877 -3.2482 19 1 8.2305 5.5975 -3.2949 20 6 6.6041 4.2896 -3.7815 21 7 5.7230 5.2487 -3.9711 22 14 6.1774 2.5272 -4.2304 23 1 5.4981 1.8747 -3.0823 24 1 5.2738 2.5214 -5.4087 25 1 7.4213 1.7846 -4.5568 26 6 7.9499 2.4345 -2.0477 27 6 3.4757 -1.2040 -0.0059 28 8 4.0991 -2.4063 -0.0121 29 7 2.1545 -1.1489 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6411 2.1376 -0.0004 34 1 4.1223 2.1345 0.0001 35 1 5.9754 1.9172 0.0011 36 1 8.0649 1.7125 2.0283 37 1 7.9971 -0.0594 1.8727 38 1 9.4853 0.8161 1.4392 39 1 10.3122 1.3904 -1.2166 40 1 10.3397 2.1042 0.4136 41 1 11.6319 3.4996 -1.1650 42 1 10.1920 4.3766 -0.5931 43 1 10.3790 4.6612 -3.0179 44 1 10.4914 2.8985 -3.2483 45 1 4.8521 5.0405 -4.3442 46 1 8.2023 1.5381 -2.6143 47 1 6.8691 2.5758 -2.0456 48 1 4.2800 -2.7602 0.8695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025538708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:40 Heat of formation + Delta-G solvation = -23.866041 kcal Electronic energy + Delta-G solvation = -29918.414317 eV Core-core repulsion = 25974.070247 eV Total energy + Delta-G solvation = -3944.344070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.98944 -39.49468 -38.07907 -37.27334 -35.27232 -33.64218 -32.95118 -31.77345 -31.32035 -30.54108 -29.02287 -27.98289 -25.34059 -24.08602 -23.31670 -23.05074 -22.44303 -20.82412 -20.35574 -19.44026 -18.74618 -17.71705 -17.09217 -16.79874 -15.94785 -15.65503 -15.51958 -14.84217 -14.79656 -14.35427 -14.22013 -14.02947 -13.94734 -13.56908 -13.39234 -13.25529 -12.91479 -12.82225 -12.74771 -12.47270 -12.39854 -12.25535 -12.14368 -11.71449 -11.64706 -11.41738 -11.26981 -10.80023 -10.54035 -10.45861 -10.16400 -10.13045 -10.09377 -9.92303 -9.73201 -9.53099 -9.42885 -9.06220 -8.85067 -8.65965 -7.01411 -6.01350 -3.36456 0.43117 0.93848 2.81308 3.13743 3.26415 3.37112 3.46026 3.50184 3.65518 4.31515 4.46481 4.46910 4.60678 4.72067 4.78435 5.08368 5.12236 5.16846 5.17029 5.27494 5.31642 5.33720 5.35113 5.44387 5.56577 5.61568 5.67957 5.73531 5.82507 5.85829 5.92277 5.98895 6.06030 6.11919 6.23817 6.25922 6.29187 6.33081 6.51491 6.54944 6.60559 6.67914 6.72430 6.94508 7.38983 7.56215 7.69239 7.90928 8.27024 8.27233 8.89139 9.66583 10.05576 11.14351 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.004450 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.395082 B = 6290.396144 C = 7892.016154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.172 3.828 3 C -0.189 4.189 4 C -0.022 4.022 5 C -0.211 4.211 6 C 0.565 3.435 7 O -0.525 6.525 8 N -0.716 5.716 9 C 0.147 3.853 10 H 0.087 0.913 11 C -0.160 4.160 12 C -0.113 4.113 13 H 0.078 0.922 14 C -0.103 4.103 15 C -0.134 4.134 16 C 0.146 3.854 17 N -0.606 5.606 18 C -0.258 4.258 19 H 0.086 0.914 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.878 3.122 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.135 3.865 27 C 0.373 3.627 28 O -0.459 6.459 29 N -0.511 5.511 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.400 0.600 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.262 0.738 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.763 -7.976 13.546 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.034 3.966 3 C -0.209 4.209 4 C -0.048 4.048 5 C -0.218 4.218 6 C 0.351 3.649 7 O -0.402 6.402 8 N -0.368 5.368 9 C 0.042 3.958 10 H 0.105 0.895 11 C -0.218 4.218 12 C -0.134 4.134 13 H 0.097 0.903 14 C -0.141 4.141 15 C -0.173 4.173 16 C 0.020 3.980 17 N -0.329 5.329 18 C -0.386 4.386 19 H 0.104 0.896 20 C -0.173 4.173 21 N -0.550 5.550 22 Si 0.709 3.291 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.197 1.197 26 C 0.009 3.991 27 C 0.193 3.807 28 O -0.266 6.266 29 N -0.231 5.231 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.236 0.764 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.042 0.958 47 H 0.089 0.911 48 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.913 -9.432 12.853 16.416 hybrid contribution -0.086 0.171 0.003 0.191 sum -3.999 -9.262 12.856 16.342 Atomic orbital electron populations 1.20827 0.88082 1.03875 1.03730 1.21281 0.97101 0.87219 0.90970 1.21945 0.94491 0.99762 1.04670 1.21840 0.94802 0.97292 0.90826 1.21160 0.95158 0.94464 1.10970 1.17766 0.85878 0.84484 0.76776 1.90779 1.71732 1.28358 1.49381 1.46016 1.07571 1.08476 1.74700 1.21073 0.78303 0.99690 0.96723 0.89486 1.22191 1.01572 1.01801 0.96214 1.21997 0.96322 0.95780 0.99254 0.90348 1.21452 0.94075 0.98356 1.00185 1.21991 0.98800 0.97383 0.99168 1.20957 0.84354 0.99537 0.93178 1.44361 1.00855 1.22937 1.64785 1.18947 0.99006 0.89217 1.31444 0.89593 1.25239 0.96630 0.96593 0.98861 1.69832 1.05799 1.31981 1.47436 0.87059 0.77900 0.86647 0.77518 1.21695 1.23203 1.19718 1.21340 0.97446 0.90152 0.90137 1.19100 0.86080 0.85053 0.90489 1.84740 1.76422 1.31809 1.33589 1.67129 1.09294 1.30426 1.16293 0.89709 0.90125 0.90037 0.83481 0.83650 0.76442 0.92528 0.92515 0.91221 0.92385 0.92397 0.92589 0.91970 0.91968 0.96060 0.92804 0.95845 0.91143 0.73802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.16 36.01 0.37 -0.48 16 2 C 0.17 2.01 6.78 -82.53 -0.56 1.45 16 3 C -0.19 -2.10 9.71 -39.50 -0.38 -2.48 16 4 C -0.02 -0.28 9.64 -38.89 -0.37 -0.65 16 5 C -0.21 -3.18 5.90 -104.69 -0.62 -3.80 16 6 C 0.56 9.34 7.74 -12.47 -0.10 9.24 16 7 O -0.53 -9.82 14.86 -16.48 -0.24 -10.06 16 8 N -0.72 -10.94 4.43 -54.85 -0.24 -11.18 16 9 C 0.15 2.20 2.16 -67.93 -0.15 2.06 16 10 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 11 C -0.16 -1.96 9.13 37.16 0.34 -1.62 16 12 C -0.11 -1.84 1.98 -90.50 -0.18 -2.02 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.10 -1.49 4.85 -26.69 -0.13 -1.62 16 15 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 16 C 0.15 2.80 6.51 -3.71 -0.02 2.77 16 17 N -0.61 -14.02 2.78 -172.28 -0.48 -14.50 16 18 C -0.26 -7.02 10.03 -15.06 -0.15 -7.18 16 19 H 0.09 2.49 8.05 -52.49 -0.42 2.07 16 20 C 0.03 0.72 5.23 -17.44 -0.09 0.63 16 21 N -0.91 -26.98 13.97 55.49 0.78 -26.20 16 22 Si 0.88 22.63 24.35 -169.99 -4.14 18.49 16 23 H -0.29 -7.13 6.62 56.52 0.37 -6.75 16 24 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 25 H -0.27 -7.12 6.63 56.52 0.37 -6.74 16 26 C 0.14 2.85 3.24 -3.69 -0.01 2.84 16 27 C 0.37 5.66 7.77 -16.61 -0.13 5.53 16 28 O -0.46 -6.78 11.66 -39.75 -0.46 -7.25 16 29 N -0.51 -7.25 10.28 -9.21 -0.09 -7.35 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.15 1.65 6.52 -52.48 -0.34 1.31 16 35 H 0.40 5.66 6.53 -40.82 -0.27 5.39 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.77 6.40 -51.93 -0.33 0.43 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.71 6.36 -51.93 -0.33 0.38 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.02 0.53 7.07 -51.93 -0.37 0.16 16 47 H 0.07 1.61 4.03 -51.93 -0.21 1.40 16 48 H 0.40 4.05 9.06 45.56 0.41 4.46 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -34.61 376.83 -8.06 -42.67 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.50 Total: 7.26 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.35 Total: 2.45 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.04 Total: -59.24 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.71 Total: -17.31 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.14 Total: 18.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.61 -8.06 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025538708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.800 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds