Wall clock time and date at job start Tue Mar 31 2020 19:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38351 * 119.40471 * 2 1 4 4 C 1.38338 * 119.45684 * 179.97438 * 3 2 1 5 5 C 1.39987 * 118.34724 * 0.02562 * 4 3 2 6 6 C 1.47532 * 120.59386 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99728 * 179.97438 * 6 5 4 8 8 N 1.34770 * 120.00220 * 0.02562 * 6 5 4 9 9 C 1.46498 * 120.00060 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47096 * 35.00417 * 9 8 6 11 11 C 1.53001 * 109.47464 * 275.00058 * 9 8 6 12 12 C 1.53006 * 109.47049 * 155.00064 * 9 8 6 13 13 H 1.08995 * 109.52527 * 59.92072 * 12 9 8 14 14 C 1.53037 * 109.49495 * 180.02562 * 12 9 8 15 15 C 1.53041 * 109.53859 * 181.31592 * 14 12 9 16 16 C 1.53197 * 109.31421 * 298.63487 * 15 14 12 17 17 N 1.46930 * 108.89198 * 54.56094 * 16 15 14 18 18 C 1.36936 * 120.63124 * 126.46889 * 17 16 15 19 19 H 1.07996 * 119.99570 * 332.67082 * 18 17 16 20 20 C 1.38808 * 120.00000 * 152.67179 * 18 17 16 21 21 N 1.31611 * 120.00187 * 159.42039 * 20 18 17 22 22 Si 1.86807 * 120.00080 * 339.42073 * 20 18 17 23 23 H 1.48502 * 109.46912 * 92.90377 * 22 20 18 24 24 H 1.48493 * 109.47014 * 212.90653 * 22 20 18 25 25 H 1.48501 * 109.46860 * 332.90463 * 22 20 18 26 26 C 1.46971 * 118.71452 * 306.64526 * 17 16 15 27 27 C 1.40274 * 118.80599 * 0.27391 * 5 4 3 28 28 O 1.35430 * 119.79868 * 179.70662 * 27 5 4 29 29 N 1.31879 * 119.40459 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47232 * 89.99934 * 1 2 3 31 31 H 1.08995 * 109.47327 * 210.00351 * 1 2 3 32 32 H 1.09004 * 109.46945 * 330.00012 * 1 2 3 33 33 H 1.08000 * 120.27473 * 359.97438 * 3 2 1 34 34 H 1.08006 * 120.82424 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00282 * 359.97438 * 8 6 5 36 36 H 1.09007 * 109.46660 * 300.00302 * 11 9 8 37 37 H 1.08993 * 109.46910 * 59.99907 * 11 9 8 38 38 H 1.08999 * 109.47583 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.46391 * 61.29742 * 14 12 9 40 40 H 1.09001 * 109.46120 * 301.33176 * 14 12 9 41 41 H 1.09000 * 109.50091 * 178.68175 * 15 14 12 42 42 H 1.09006 * 109.52414 * 58.59740 * 15 14 12 43 43 H 1.08995 * 109.58974 * 174.42029 * 16 15 14 44 44 H 1.09002 * 109.58120 * 294.70654 * 16 15 14 45 45 H 0.97006 * 120.00623 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.46097 * 293.57176 * 26 17 16 47 47 H 1.09000 * 109.59239 * 173.21544 * 26 17 16 48 48 H 0.96699 * 114.00424 * 89.99893 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.2355 -0.0249 0.0005 6 6 5.7097 -0.0814 0.0005 7 8 6.2769 -1.1569 0.0010 8 7 6.4278 1.0591 0.0010 9 6 7.8917 1.0030 0.0016 10 1 8.2227 0.1480 -0.5880 11 6 8.3961 0.8575 1.4388 12 6 8.4517 2.2900 -0.6075 13 1 8.1200 3.1457 -0.0195 14 6 9.9809 2.2317 -0.6078 15 6 10.5426 3.5323 -1.1867 16 6 10.0646 3.6909 -2.6335 17 7 8.5983 3.6013 -2.6626 18 6 7.8505 4.5877 -3.2482 19 1 8.2305 5.5975 -3.2949 20 6 6.6041 4.2896 -3.7815 21 7 5.7230 5.2487 -3.9711 22 14 6.1774 2.5272 -4.2304 23 1 5.4981 1.8747 -3.0823 24 1 5.2738 2.5214 -5.4087 25 1 7.4213 1.7846 -4.5568 26 6 7.9499 2.4345 -2.0477 27 6 3.4757 -1.2040 -0.0059 28 8 4.0991 -2.4063 -0.0121 29 7 2.1545 -1.1489 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6411 2.1376 -0.0004 34 1 4.1223 2.1345 0.0001 35 1 5.9754 1.9172 0.0011 36 1 8.0649 1.7125 2.0283 37 1 7.9971 -0.0594 1.8727 38 1 9.4853 0.8161 1.4392 39 1 10.3122 1.3904 -1.2166 40 1 10.3397 2.1042 0.4136 41 1 11.6319 3.4996 -1.1650 42 1 10.1920 4.3766 -0.5931 43 1 10.3790 4.6612 -3.0179 44 1 10.4914 2.8985 -3.2483 45 1 4.8521 5.0405 -4.3442 46 1 8.2023 1.5381 -2.6143 47 1 6.8691 2.5758 -2.0456 48 1 4.2800 -2.7602 0.8695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025538708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:39 Heat of formation + Delta-G solvation = -49.874285 kcal Electronic energy + Delta-G solvation = -29919.542119 eV Core-core repulsion = 25974.070247 eV Total energy + Delta-G solvation = -3945.471872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.04964 -40.71684 -39.47998 -38.33754 -36.70397 -34.99798 -34.37241 -32.92148 -32.68468 -32.06277 -30.29389 -28.88152 -27.10436 -25.31505 -24.42730 -24.22156 -23.89714 -22.16599 -21.58524 -20.88196 -19.80043 -18.90400 -18.78912 -18.10402 -17.34057 -16.97916 -16.81566 -16.09646 -15.93358 -15.83326 -15.49010 -15.37329 -15.12909 -14.92868 -14.76434 -14.55831 -14.28265 -14.10042 -13.88678 -13.68221 -13.60740 -13.32092 -13.18149 -13.06799 -12.77935 -12.70373 -12.69258 -12.54763 -12.12975 -11.95820 -11.71435 -11.58515 -11.39050 -11.26970 -11.20052 -11.10853 -10.69321 -10.55006 -10.22579 -9.89666 -8.94073 -8.21026 -5.50073 -0.58621 -0.03702 1.18062 1.33495 1.38893 1.68078 1.99290 2.32098 2.38554 2.61846 2.99964 3.28569 3.38579 3.56038 3.60671 3.77111 3.83124 3.91110 3.96389 4.18716 4.26901 4.33931 4.37135 4.40875 4.48703 4.59214 4.61274 4.68534 4.75412 4.78996 4.82643 4.85615 4.95530 4.97681 4.99595 5.06961 5.10005 5.17404 5.21126 5.24277 5.41126 5.42168 5.47273 5.59540 5.85263 6.10684 6.34230 6.47322 6.72274 6.89554 7.05092 7.60006 8.02230 8.98826 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.004450 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.395082 B = 6290.396144 C = 7892.016154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.169 3.831 3 C -0.183 4.183 4 C -0.028 4.028 5 C -0.235 4.235 6 C 0.562 3.438 7 O -0.555 6.555 8 N -0.714 5.714 9 C 0.149 3.851 10 H 0.067 0.933 11 C -0.149 4.149 12 C -0.099 4.099 13 H 0.081 0.919 14 C -0.101 4.101 15 C -0.124 4.124 16 C 0.135 3.865 17 N -0.620 5.620 18 C -0.243 4.243 19 H 0.061 0.939 20 C -0.017 4.017 21 N -0.946 5.946 22 Si 0.929 3.071 23 H -0.276 1.276 24 H -0.315 1.315 25 H -0.281 1.281 26 C 0.134 3.866 27 C 0.358 3.642 28 O -0.476 6.476 29 N -0.530 5.530 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.405 0.595 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.025 0.975 45 H 0.262 0.738 46 H 0.008 0.992 47 H 0.051 0.949 48 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -8.039 15.460 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.031 3.969 3 C -0.203 4.203 4 C -0.054 4.054 5 C -0.241 4.241 6 C 0.349 3.651 7 O -0.435 6.435 8 N -0.366 5.366 9 C 0.044 3.956 10 H 0.085 0.915 11 C -0.207 4.207 12 C -0.120 4.120 13 H 0.100 0.900 14 C -0.139 4.139 15 C -0.162 4.162 16 C 0.011 3.989 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.079 0.921 20 C -0.212 4.212 21 N -0.593 5.593 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.244 1.244 25 H -0.207 1.207 26 C 0.009 3.991 27 C 0.178 3.822 28 O -0.286 6.286 29 N -0.251 5.251 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.199 0.801 34 H 0.174 0.826 35 H 0.241 0.759 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.026 0.974 47 H 0.069 0.931 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -3.693 -9.508 14.805 17.979 hybrid contribution -0.130 0.243 -0.617 0.676 sum -3.823 -9.266 14.188 17.371 Atomic orbital electron populations 1.20974 0.85189 1.05485 1.04632 1.22026 0.98954 0.86753 0.89147 1.22352 0.93864 1.01037 1.02998 1.22082 0.95861 0.96866 0.90589 1.21130 0.94359 0.95471 1.13169 1.18031 0.86624 0.84241 0.76174 1.90747 1.72450 1.29322 1.50999 1.46052 1.07816 1.08477 1.74236 1.21066 0.78180 0.98003 0.98317 0.91454 1.22105 1.02648 1.02034 0.93896 1.21832 0.97956 0.96545 0.95648 0.90021 1.21500 0.92200 0.97823 1.02341 1.21886 1.00788 0.97723 0.95823 1.21204 0.82013 0.99383 0.96319 1.44534 1.02475 1.22473 1.64964 1.18935 0.98906 0.89269 1.30135 0.92149 1.25614 0.96976 0.98766 0.99857 1.69910 1.06382 1.33414 1.49560 0.86232 0.76989 0.83672 0.77058 1.20340 1.24432 1.20681 1.21295 0.96417 0.88481 0.92954 1.19270 0.86658 0.85089 0.91134 1.84679 1.76665 1.32086 1.35156 1.67210 1.08835 1.31847 1.17194 0.88900 0.89918 0.87089 0.80076 0.82561 0.75872 0.91163 0.93227 0.89259 0.92334 0.88758 0.89240 0.92275 0.92597 0.95679 0.92861 0.97432 0.93104 0.72147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.16 71.24 0.72 -0.64 16 2 C 0.17 3.63 6.78 42.58 0.29 3.92 16 3 C -0.18 -3.66 9.71 22.32 0.22 -3.44 16 4 C -0.03 -0.69 9.64 22.72 0.22 -0.48 16 5 C -0.23 -7.05 5.90 -19.91 -0.12 -7.17 16 6 C 0.56 18.63 7.74 86.70 0.67 19.30 16 7 O -0.56 -21.10 14.86 16.82 0.25 -20.85 16 8 N -0.71 -21.34 4.43 -445.71 -1.98 -23.31 16 9 C 0.15 4.24 2.16 44.99 0.10 4.34 16 10 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 11 C -0.15 -3.23 9.13 71.98 0.66 -2.57 16 12 C -0.10 -3.04 1.98 -10.72 -0.02 -3.06 16 13 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 14 C -0.10 -2.57 4.85 30.62 0.15 -2.42 16 15 C -0.12 -3.40 6.08 30.67 0.19 -3.21 16 16 C 0.14 5.02 6.51 86.36 0.56 5.58 16 17 N -0.62 -28.45 2.78 -698.97 -1.94 -30.39 16 18 C -0.24 -13.38 10.03 84.03 0.84 -12.54 16 19 H 0.06 3.60 8.05 -2.91 -0.02 3.57 16 20 C -0.02 -0.95 5.23 84.86 0.44 -0.50 16 21 N -0.95 -57.25 13.97 21.65 0.30 -56.95 16 22 Si 0.93 47.78 24.35 68.60 1.67 49.45 16 23 H -0.28 -13.44 6.62 99.48 0.66 -12.78 16 24 H -0.32 -16.64 7.11 99.48 0.71 -15.94 16 25 H -0.28 -14.68 6.63 99.48 0.66 -14.02 16 26 C 0.13 5.56 3.24 86.35 0.28 5.84 16 27 C 0.36 10.96 7.77 85.13 0.66 11.62 16 28 O -0.48 -14.49 11.66 -66.44 -0.77 -15.26 16 29 N -0.53 -14.74 10.28 -296.06 -3.04 -17.78 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 0.78 8.07 -2.39 -0.02 0.76 16 33 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.16 3.36 6.52 -2.91 -0.02 3.34 16 35 H 0.40 11.12 6.53 -92.71 -0.61 10.52 16 36 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.59 6.40 -2.39 -0.02 1.57 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.80 6.36 -2.39 -0.02 1.79 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 44 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 46 H 0.01 0.35 7.07 -2.38 -0.02 0.33 16 47 H 0.05 2.30 4.03 -2.39 -0.01 2.29 16 48 H 0.42 8.81 9.06 -74.06 -0.67 8.14 16 Total: -1.00 -76.95 376.83 -0.03 -76.98 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.38 Total: 23.55 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 5.86 Total: 14.57 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -6.66 Total: -128.43 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.52 Total: -36.11 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.45 kcal Total: -76.95 -0.03 -76.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025538708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.101 kcal (2) G-P(sol) polarization free energy of solvation -76.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds