Wall clock time and date at job start Tue Mar 31 2020 19:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35433 * 116.99507 * 2 1 4 4 N 1.32238 * 119.80157 * 0.26572 * 3 2 1 5 5 C 1.31873 * 121.79803 * 180.24765 * 4 3 2 6 6 C 1.50706 * 119.40774 * 179.75720 * 5 4 3 7 7 C 1.38365 * 121.18800 * 359.47935 * 5 4 3 8 8 C 1.38333 * 119.45425 * 0.25847 * 7 5 4 9 9 C 1.39983 * 118.35362 * 359.97438 * 8 7 5 10 10 C 1.47521 * 120.60127 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00684 * 180.02562 * 10 9 8 12 12 N 1.34785 * 119.99635 * 0.02562 * 10 9 8 13 13 C 1.46500 * 119.99905 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47136 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47028 * 180.02562 * 14 13 12 16 16 H 1.09002 * 110.64184 * 305.69302 * 15 14 13 17 17 C 1.55157 * 110.71748 * 182.55788 * 15 14 13 18 18 C 1.54916 * 101.57985 * 206.13052 * 17 15 14 19 19 N 1.47428 * 104.82798 * 37.01046 * 18 17 15 20 20 C 1.36940 * 125.64246 * 155.90728 * 19 18 17 21 21 H 1.07999 * 119.99443 * 179.97438 * 20 19 18 22 22 C 1.38814 * 120.00179 * 359.96805 * 20 19 18 23 23 N 1.31614 * 119.99862 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47258 * 60.00517 * 24 22 20 26 26 H 1.48499 * 109.47025 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47309 * 300.00500 * 24 22 20 28 28 C 1.47312 * 108.73697 * 335.71174 * 19 18 17 29 29 H 1.09008 * 109.46826 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47479 * 300.00313 * 1 2 3 31 31 H 1.09004 * 109.47586 * 60.00806 * 1 2 3 32 32 H 1.08999 * 109.47015 * 269.73120 * 6 5 4 33 33 H 1.09000 * 109.46646 * 29.72273 * 6 5 4 34 34 H 1.09000 * 109.47248 * 149.72990 * 6 5 4 35 35 H 1.07997 * 120.27125 * 180.23168 * 7 5 4 36 36 H 1.08001 * 120.82439 * 179.97438 * 8 7 5 37 37 H 0.96996 * 120.00079 * 0.02562 * 12 10 9 38 38 H 1.09007 * 109.46665 * 300.00217 * 13 12 10 39 39 H 1.08999 * 109.47422 * 59.99998 * 13 12 10 40 40 H 1.09005 * 109.46514 * 299.99764 * 14 13 12 41 41 H 1.08999 * 109.47280 * 59.99528 * 14 13 12 42 42 H 1.08999 * 111.00712 * 324.20096 * 17 15 14 43 43 H 1.09002 * 111.00862 * 88.02254 * 17 15 14 44 44 H 1.09004 * 110.36203 * 155.84568 * 18 17 15 45 45 H 1.08991 * 110.36727 * 278.06398 * 18 17 15 46 46 H 0.97004 * 119.99732 * 179.97438 * 23 22 20 47 47 H 1.08998 * 110.06425 * 241.87270 * 28 19 18 48 48 H 1.09003 * 109.84434 * 120.61322 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2068 0.0000 4 7 1.3196 2.3132 0.0053 5 6 1.8768 3.5084 0.0007 6 6 0.9997 4.7339 0.0016 7 6 3.2524 3.6576 0.0007 8 6 4.0586 2.5335 0.0003 9 6 3.4449 1.2753 0.0004 10 6 4.2569 0.0437 -0.0006 11 8 3.7126 -1.0435 -0.0010 12 7 5.6024 0.1237 -0.0011 13 6 6.4088 -1.0994 -0.0027 14 6 7.8938 -0.7311 -0.0023 15 6 8.7360 -2.0084 -0.0046 16 1 8.4508 -2.6582 0.8228 17 6 10.2486 -1.6687 0.0605 18 6 10.8760 -2.9120 -0.6179 19 7 9.9363 -3.2676 -1.6969 20 6 10.2512 -3.9682 -2.8306 21 1 9.4874 -4.1792 -3.5644 22 6 11.5520 -4.4069 -3.0366 23 7 12.4826 -4.1500 -2.1421 24 14 11.9815 -5.3619 -4.5835 25 1 11.6911 -4.5275 -5.7771 26 1 13.4241 -5.7133 -4.5637 27 1 11.1705 -6.6047 -4.6392 28 6 8.6015 -2.7488 -1.3518 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 0.7881 5.0300 -1.0258 33 1 0.0645 4.5109 0.5153 34 1 1.5119 5.5470 0.5160 35 1 3.6931 4.6436 0.0007 36 1 5.1348 2.6243 -0.0001 37 1 6.0367 0.9910 -0.0004 38 1 6.1802 -1.6864 0.8869 39 1 6.1795 -1.6847 -0.8931 40 1 8.1227 -0.1438 -0.8916 41 1 8.1228 -0.1459 0.8884 42 1 10.4701 -0.7625 -0.5032 43 1 10.5840 -1.5756 1.0935 44 1 11.8536 -2.6652 -1.0322 45 1 10.9632 -3.7305 0.0965 46 1 13.3914 -4.4569 -2.2859 47 1 7.8942 -3.5723 -1.2532 48 1 8.2627 -2.0568 -2.1229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713739708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:43 Heat of formation + Delta-G solvation = -16.857461 kcal Electronic energy + Delta-G solvation = -27824.569227 eV Core-core repulsion = 23880.529071 eV Total energy + Delta-G solvation = -3944.040155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26598 -39.30345 -38.35261 -37.73571 -35.16442 -33.73021 -32.83976 -32.15761 -30.75153 -29.08477 -28.73194 -27.38482 -26.32061 -24.72293 -23.46522 -23.27687 -22.22215 -20.86027 -20.05351 -19.36707 -18.59570 -17.73198 -17.23686 -16.81059 -16.42954 -15.68156 -15.54932 -15.01695 -14.87289 -14.70699 -14.55571 -14.45944 -14.39280 -13.63925 -13.56754 -13.32629 -13.00752 -12.77545 -12.66334 -12.49119 -12.22672 -12.01698 -11.86702 -11.66176 -11.54793 -11.38335 -11.03887 -10.87636 -10.71664 -10.39044 -10.29222 -10.14128 -10.06221 -9.93526 -9.77113 -9.68756 -9.41782 -9.10216 -8.76816 -8.59985 -6.77360 -5.60380 -3.01481 0.30759 0.85325 2.70682 2.74485 3.03911 3.43761 3.47615 3.49141 3.49982 3.71591 4.19190 4.42908 4.53390 4.55780 4.73320 4.90080 4.99659 5.03348 5.05031 5.05286 5.08321 5.13813 5.32581 5.35955 5.45177 5.46353 5.52455 5.59318 5.63596 5.67295 5.83327 5.93598 5.95096 6.05509 6.21780 6.26354 6.42213 6.44112 6.64479 6.68269 6.81951 6.91160 7.02705 7.33587 7.47494 7.57473 7.67795 7.90588 8.18338 8.41699 9.27684 9.88585 10.54304 11.43496 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.001950 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.583816 B =14351.918342 C =14801.550294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.269 6.269 3 C 0.378 3.622 4 N -0.547 5.547 5 C 0.192 3.808 6 C -0.109 4.109 7 C -0.221 4.221 8 C -0.005 4.005 9 C -0.215 4.215 10 C 0.561 3.439 11 O -0.515 6.515 12 N -0.727 5.727 13 C 0.119 3.881 14 C -0.116 4.116 15 C -0.097 4.097 16 H 0.072 0.928 17 C -0.138 4.138 18 C 0.151 3.849 19 N -0.606 5.606 20 C -0.220 4.220 21 H 0.076 0.924 22 C -0.014 4.014 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.139 3.861 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.395 0.605 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.105 0.895 45 H 0.010 0.990 46 H 0.252 0.748 47 H 0.020 0.980 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 20.502 7.872 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.173 6.173 3 C 0.197 3.803 4 N -0.273 5.273 5 C 0.054 3.946 6 C -0.166 4.166 7 C -0.241 4.241 8 C -0.031 4.031 9 C -0.221 4.221 10 C 0.347 3.653 11 O -0.391 6.391 12 N -0.380 5.380 13 C -0.004 4.004 14 C -0.154 4.154 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.177 4.177 18 C 0.026 3.974 19 N -0.332 5.332 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.209 4.209 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.013 3.987 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.038 0.962 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -22.132 19.181 7.771 30.301 hybrid contribution 1.079 0.050 -0.769 1.326 sum -21.053 19.231 7.002 29.362 Atomic orbital electron populations 1.22966 0.77483 1.03416 1.02207 1.86559 1.22372 1.22860 1.85473 1.19824 0.88120 0.84958 0.87372 1.67284 1.40334 0.98223 1.21413 1.21196 0.92208 0.91979 0.89204 1.20834 0.99404 0.92735 1.03645 1.21737 0.93827 1.00007 1.08517 1.21640 1.00645 0.90465 0.90344 1.20043 0.91641 0.95089 1.15349 1.17745 0.82044 0.88262 0.77292 1.90849 1.71597 1.28349 1.48313 1.45943 1.05720 1.10309 1.75987 1.21517 0.89946 0.85992 1.02902 1.21795 0.92570 0.98811 1.02266 1.22090 0.95772 0.95040 0.98791 0.90952 1.23038 0.94070 1.00907 0.99687 1.21914 0.96264 0.90591 0.88584 1.44589 1.03356 1.64421 1.20803 1.19056 0.93994 1.26236 0.95586 0.90611 1.24785 0.95974 1.01456 0.98675 1.69796 1.01756 1.51075 1.34656 0.86151 0.77143 0.79748 0.82460 1.21210 1.21604 1.21246 1.21425 0.89268 0.95099 0.92915 0.88255 0.92283 0.92256 0.89700 0.90152 0.90016 0.83826 0.83646 0.76998 0.91366 0.90811 0.91184 0.91646 0.92228 0.92516 0.87710 0.97185 0.93774 0.96173 0.95895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.38 101.05 1.05 1.37 16 2 O -0.27 -3.64 8.58 -39.76 -0.34 -3.98 16 3 C 0.38 4.72 7.51 -16.61 -0.12 4.60 16 4 N -0.55 -5.79 9.11 -9.20 -0.08 -5.88 16 5 C 0.19 1.51 6.78 -82.52 -0.56 0.95 16 6 C -0.11 -0.48 10.16 36.01 0.37 -0.11 16 7 C -0.22 -1.46 9.71 -39.50 -0.38 -1.84 16 8 C -0.01 -0.04 9.64 -38.89 -0.37 -0.42 16 9 C -0.22 -2.50 5.90 -104.69 -0.62 -3.12 16 10 C 0.56 7.80 7.77 -12.47 -0.10 7.70 16 11 O -0.52 -9.27 15.19 -16.48 -0.25 -9.52 16 12 N -0.73 -8.30 5.51 -61.35 -0.34 -8.64 16 13 C 0.12 1.58 5.54 -4.04 -0.02 1.55 16 14 C -0.12 -1.49 4.72 -26.73 -0.13 -1.62 16 15 C -0.10 -1.65 2.95 -88.79 -0.26 -1.91 16 16 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.14 -2.57 6.54 -24.58 -0.16 -2.73 16 18 C 0.15 3.72 5.89 -2.52 -0.01 3.71 16 19 N -0.61 -15.91 3.40 -169.84 -0.58 -16.49 16 20 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 23 N -0.92 -27.36 10.09 55.49 0.56 -26.80 16 24 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.14 2.95 6.13 -2.91 -0.02 2.93 16 29 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.19 8.07 -51.93 -0.42 -0.22 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.15 0.69 6.52 -52.49 -0.34 0.34 16 37 H 0.40 3.19 6.57 -40.82 -0.27 2.92 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 40 H 0.07 0.90 8.00 -51.93 -0.42 0.48 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.11 2.89 5.88 -51.93 -0.31 2.58 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -35.83 390.21 -9.35 -45.18 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.58 Total: -1.35 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.60 Total: 4.12 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.44 Total: -57.80 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.59 Total: -13.50 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.83 -9.35 -45.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713739708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.320 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds