Wall clock time and date at job start Tue Mar 31 2020 19:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35433 * 116.99507 * 2 1 4 4 N 1.32238 * 119.80157 * 0.26572 * 3 2 1 5 5 C 1.31873 * 121.79803 * 180.24765 * 4 3 2 6 6 C 1.50706 * 119.40774 * 179.75720 * 5 4 3 7 7 C 1.38365 * 121.18800 * 359.47935 * 5 4 3 8 8 C 1.38333 * 119.45425 * 0.25847 * 7 5 4 9 9 C 1.39983 * 118.35362 * 359.97438 * 8 7 5 10 10 C 1.47521 * 120.60127 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00684 * 180.02562 * 10 9 8 12 12 N 1.34785 * 119.99635 * 0.02562 * 10 9 8 13 13 C 1.46500 * 119.99905 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47136 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47028 * 180.02562 * 14 13 12 16 16 H 1.09002 * 110.64184 * 305.69302 * 15 14 13 17 17 C 1.55157 * 110.71748 * 182.55788 * 15 14 13 18 18 C 1.54916 * 101.57985 * 206.13052 * 17 15 14 19 19 N 1.47428 * 104.82798 * 37.01046 * 18 17 15 20 20 C 1.36940 * 125.64246 * 155.90728 * 19 18 17 21 21 H 1.07999 * 119.99443 * 179.97438 * 20 19 18 22 22 C 1.38814 * 120.00179 * 359.96805 * 20 19 18 23 23 N 1.31614 * 119.99862 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47258 * 60.00517 * 24 22 20 26 26 H 1.48499 * 109.47025 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47309 * 300.00500 * 24 22 20 28 28 C 1.47312 * 108.73697 * 335.71174 * 19 18 17 29 29 H 1.09008 * 109.46826 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47479 * 300.00313 * 1 2 3 31 31 H 1.09004 * 109.47586 * 60.00806 * 1 2 3 32 32 H 1.08999 * 109.47015 * 269.73120 * 6 5 4 33 33 H 1.09000 * 109.46646 * 29.72273 * 6 5 4 34 34 H 1.09000 * 109.47248 * 149.72990 * 6 5 4 35 35 H 1.07997 * 120.27125 * 180.23168 * 7 5 4 36 36 H 1.08001 * 120.82439 * 179.97438 * 8 7 5 37 37 H 0.96996 * 120.00079 * 0.02562 * 12 10 9 38 38 H 1.09007 * 109.46665 * 300.00217 * 13 12 10 39 39 H 1.08999 * 109.47422 * 59.99998 * 13 12 10 40 40 H 1.09005 * 109.46514 * 299.99764 * 14 13 12 41 41 H 1.08999 * 109.47280 * 59.99528 * 14 13 12 42 42 H 1.08999 * 111.00712 * 324.20096 * 17 15 14 43 43 H 1.09002 * 111.00862 * 88.02254 * 17 15 14 44 44 H 1.09004 * 110.36203 * 155.84568 * 18 17 15 45 45 H 1.08991 * 110.36727 * 278.06398 * 18 17 15 46 46 H 0.97004 * 119.99732 * 179.97438 * 23 22 20 47 47 H 1.08998 * 110.06425 * 241.87270 * 28 19 18 48 48 H 1.09003 * 109.84434 * 120.61322 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2068 0.0000 4 7 1.3196 2.3132 0.0053 5 6 1.8768 3.5084 0.0007 6 6 0.9997 4.7339 0.0016 7 6 3.2524 3.6576 0.0007 8 6 4.0586 2.5335 0.0003 9 6 3.4449 1.2753 0.0004 10 6 4.2569 0.0437 -0.0006 11 8 3.7126 -1.0435 -0.0010 12 7 5.6024 0.1237 -0.0011 13 6 6.4088 -1.0994 -0.0027 14 6 7.8938 -0.7311 -0.0023 15 6 8.7360 -2.0084 -0.0046 16 1 8.4508 -2.6582 0.8228 17 6 10.2486 -1.6687 0.0605 18 6 10.8760 -2.9120 -0.6179 19 7 9.9363 -3.2676 -1.6969 20 6 10.2512 -3.9682 -2.8306 21 1 9.4874 -4.1792 -3.5644 22 6 11.5520 -4.4069 -3.0366 23 7 12.4826 -4.1500 -2.1421 24 14 11.9815 -5.3619 -4.5835 25 1 11.6911 -4.5275 -5.7771 26 1 13.4241 -5.7133 -4.5637 27 1 11.1705 -6.6047 -4.6392 28 6 8.6015 -2.7488 -1.3518 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 0.7881 5.0300 -1.0258 33 1 0.0645 4.5109 0.5153 34 1 1.5119 5.5470 0.5160 35 1 3.6931 4.6436 0.0007 36 1 5.1348 2.6243 -0.0001 37 1 6.0367 0.9910 -0.0004 38 1 6.1802 -1.6864 0.8869 39 1 6.1795 -1.6847 -0.8931 40 1 8.1227 -0.1438 -0.8916 41 1 8.1228 -0.1459 0.8884 42 1 10.4701 -0.7625 -0.5032 43 1 10.5840 -1.5756 1.0935 44 1 11.8536 -2.6652 -1.0322 45 1 10.9632 -3.7305 0.0965 46 1 13.3914 -4.4569 -2.2859 47 1 7.8942 -3.5723 -1.2532 48 1 8.2627 -2.0568 -2.1229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713739708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:42 Heat of formation + Delta-G solvation = -41.925498 kcal Electronic energy + Delta-G solvation = -27825.656258 eV Core-core repulsion = 23880.529071 eV Total energy + Delta-G solvation = -3945.127187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.00935 -40.32762 -39.32966 -39.09849 -36.44653 -34.89546 -34.15444 -32.77847 -32.34619 -30.69951 -29.45346 -28.44817 -27.60019 -26.45728 -24.40686 -23.89361 -23.41728 -22.02130 -21.71572 -20.76996 -19.38518 -18.88481 -18.59104 -17.96344 -17.25184 -17.04588 -16.63624 -16.53584 -16.09039 -15.68297 -15.52073 -15.39822 -15.13119 -15.07063 -14.74756 -14.26890 -14.08761 -13.76749 -13.54171 -13.51705 -13.34009 -13.30023 -13.07951 -13.02470 -12.80965 -12.71071 -12.66661 -12.22695 -12.05165 -12.02890 -11.76849 -11.55881 -11.42464 -11.26522 -11.15703 -10.98166 -10.73791 -10.64425 -10.13507 -9.47879 -8.87265 -7.77099 -5.21287 -0.39046 0.22242 1.44858 1.48403 1.54848 1.82391 2.02728 2.11296 2.49534 2.73839 3.10939 3.31332 3.67347 3.70252 3.76045 3.78468 3.89496 3.96107 4.17595 4.22911 4.29622 4.34971 4.35666 4.37032 4.40340 4.64859 4.66512 4.71165 4.73103 4.75779 4.81248 4.90511 4.93736 4.99049 5.05238 5.13416 5.15922 5.20553 5.27997 5.42005 5.44155 5.48095 5.52828 5.70785 5.84581 6.17811 6.33125 6.52224 6.74538 7.12190 7.23203 7.80014 8.43960 9.24228 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.001950 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.583816 B =14351.918342 C =14801.550294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.304 6.304 3 C 0.352 3.648 4 N -0.563 5.563 5 C 0.182 3.818 6 C -0.107 4.107 7 C -0.209 4.209 8 C 0.003 3.997 9 C -0.243 4.243 10 C 0.557 3.443 11 O -0.569 6.569 12 N -0.710 5.710 13 C 0.125 3.875 14 C -0.099 4.099 15 C -0.084 4.084 16 H 0.077 0.923 17 C -0.120 4.120 18 C 0.148 3.852 19 N -0.629 5.629 20 C -0.242 4.242 21 H 0.075 0.925 22 C -0.069 4.069 23 N -0.948 5.948 24 Si 0.981 3.019 25 H -0.276 1.276 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.132 3.868 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.185 0.815 36 H 0.180 0.820 37 H 0.415 0.585 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.072 0.928 45 H -0.018 1.018 46 H 0.247 0.753 47 H 0.009 0.991 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.322 24.063 8.254 33.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.208 6.208 3 C 0.172 3.828 4 N -0.289 5.289 5 C 0.045 3.955 6 C -0.163 4.163 7 C -0.228 4.228 8 C -0.022 4.022 9 C -0.249 4.249 10 C 0.345 3.655 11 O -0.449 6.449 12 N -0.363 5.363 13 C 0.002 3.998 14 C -0.137 4.137 15 C -0.104 4.104 16 H 0.095 0.905 17 C -0.159 4.159 18 C 0.024 3.976 19 N -0.356 5.356 20 C -0.371 4.371 21 H 0.093 0.907 22 C -0.261 4.261 23 N -0.598 5.598 24 Si 0.808 3.192 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.008 3.992 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.203 0.797 36 H 0.197 0.803 37 H 0.253 0.747 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.000 1.000 46 H 0.057 0.943 47 H 0.027 0.973 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -22.342 22.803 8.161 32.950 hybrid contribution 1.079 -0.982 -0.887 1.707 sum -21.263 21.821 7.274 31.324 Atomic orbital electron populations 1.23091 0.76153 1.04332 1.02539 1.86507 1.24036 1.24334 1.85970 1.20110 0.88792 0.85186 0.88720 1.67329 1.40683 0.98722 1.22123 1.21975 0.93802 0.92006 0.87751 1.20960 0.98922 0.91823 1.04638 1.22213 0.93096 1.01397 1.06121 1.22051 1.02434 0.89076 0.88654 1.20030 0.91237 0.95529 1.18090 1.18182 0.82632 0.88465 0.76206 1.90813 1.72659 1.30468 1.50960 1.45703 1.04929 1.10698 1.74984 1.21301 0.90623 0.86527 1.01398 1.21637 0.90862 0.96762 1.04400 1.22006 0.95600 0.96631 0.96155 0.90466 1.22874 0.94254 0.97956 1.00775 1.21769 0.95450 0.92446 0.87977 1.44940 1.05650 1.64408 1.20558 1.19415 0.94315 1.26702 0.96666 0.90690 1.25643 0.95930 1.02731 1.01823 1.70056 1.01682 1.51834 1.36198 0.85123 0.76562 0.78421 0.79047 1.20155 1.21621 1.20781 1.21630 0.86847 0.95128 0.95639 0.87112 0.91792 0.91968 0.88580 0.90668 0.87214 0.79729 0.80291 0.74684 0.92069 0.93466 0.90423 0.88023 0.91157 0.89495 0.91002 1.00043 0.94305 0.97294 0.95488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.38 113.37 1.18 1.83 16 2 O -0.30 -8.72 8.58 -66.47 -0.57 -9.29 16 3 C 0.35 8.93 7.51 85.13 0.64 9.57 16 4 N -0.56 -11.57 9.11 -296.04 -2.70 -14.26 16 5 C 0.18 2.41 6.78 42.58 0.29 2.69 16 6 C -0.11 -0.59 10.16 71.24 0.72 0.13 16 7 C -0.21 -1.92 9.71 22.32 0.22 -1.70 16 8 C 0.00 0.04 9.64 22.72 0.22 0.26 16 9 C -0.24 -5.46 5.90 -19.91 -0.12 -5.58 16 10 C 0.56 15.49 7.77 86.69 0.67 16.16 16 11 O -0.57 -21.48 15.19 16.83 0.26 -21.22 16 12 N -0.71 -14.91 5.51 -466.28 -2.57 -17.48 16 13 C 0.13 3.15 5.54 86.38 0.48 3.63 16 14 C -0.10 -2.20 4.72 30.59 0.14 -2.06 16 15 C -0.08 -2.70 2.95 -9.61 -0.03 -2.73 16 16 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 17 C -0.12 -4.21 6.54 31.99 0.21 -4.00 16 18 C 0.15 7.44 5.89 86.86 0.51 7.95 16 19 N -0.63 -33.72 3.40 -691.24 -2.35 -36.07 16 20 C -0.24 -14.16 10.28 84.03 0.86 -13.29 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 23 N -0.95 -57.66 10.09 21.65 0.22 -57.44 16 24 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 28 C 0.13 5.65 6.13 86.67 0.53 6.18 16 29 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 31 H 0.06 1.11 8.11 -2.38 -0.02 1.09 16 32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.11 0.01 8.07 -2.39 -0.02 -0.01 16 35 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.18 0.82 6.52 -2.91 -0.02 0.80 16 37 H 0.41 5.19 6.57 -92.71 -0.61 4.58 16 38 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.05 1.45 7.58 -2.39 -0.02 1.43 16 40 H 0.08 1.69 8.00 -2.38 -0.02 1.67 16 41 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 2.34 8.05 -2.39 -0.02 2.32 16 43 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 44 H 0.07 4.08 5.88 -2.38 -0.01 4.07 16 45 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.03 1.13 7.73 -2.39 -0.02 1.11 16 Total: -1.00 -84.00 390.21 1.66 -82.34 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.35 Total: 8.98 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 7.00 Total: 15.48 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -7.40 Total: -125.26 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.31 Total: -30.51 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -84.00 1.66 -82.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713739708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.412 kcal (2) G-P(sol) polarization free energy of solvation -84.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds