Wall clock time and date at job start Tue Mar 31 2020 17:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35648 * 116.99958 * 2 1 4 4 C 1.39341 * 120.54277 * 0.30574 * 3 2 1 5 5 C 1.38293 * 118.44081 * 180.21423 * 4 3 2 6 6 C 1.50698 * 120.27748 * 179.78360 * 5 4 3 7 7 C 1.38765 * 119.44576 * 359.50661 * 5 4 3 8 8 N 1.31374 * 121.06725 * 0.23139 * 7 5 4 9 9 C 1.32860 * 121.69751 * 0.02562 * 8 7 5 10 10 C 1.47825 * 119.78605 * 179.97438 * 9 8 7 11 11 O 1.21557 * 119.99872 * 179.97438 * 10 9 8 12 12 N 1.34782 * 119.99844 * 0.02562 * 10 9 8 13 13 C 1.46502 * 119.99503 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.46063 * 60.03037 * 13 12 10 15 15 C 1.53035 * 109.46151 * 300.06417 * 13 12 10 16 16 C 1.53193 * 109.31572 * 301.34856 * 15 13 12 17 17 N 1.46928 * 108.77311 * 305.36198 * 16 15 13 18 18 C 1.36936 * 120.63013 * 233.62788 * 17 16 15 19 19 H 1.07991 * 120.00057 * 27.67051 * 18 17 16 20 20 C 1.38811 * 119.99589 * 207.66943 * 18 17 16 21 21 N 1.31614 * 120.00371 * 17.36286 * 20 18 17 22 22 Si 1.86806 * 119.99627 * 197.36095 * 20 18 17 23 23 H 1.48505 * 109.47143 * 60.00449 * 22 20 18 24 24 H 1.48498 * 109.46896 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47307 * 300.00239 * 22 20 18 26 26 C 1.46922 * 118.73583 * 53.61040 * 17 16 15 27 27 C 1.53042 * 109.45533 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.47335 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46958 * 299.99459 * 1 2 3 30 30 H 1.08999 * 109.47854 * 59.99533 * 1 2 3 31 31 H 1.08000 * 120.77955 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47585 * 269.71783 * 6 5 4 33 33 H 1.08999 * 109.47333 * 29.72317 * 6 5 4 34 34 H 1.09003 * 109.47280 * 149.71868 * 6 5 4 35 35 H 1.08005 * 119.46820 * 180.25590 * 7 5 4 36 36 H 0.96996 * 120.00154 * 359.97438 * 12 10 9 37 37 H 1.08997 * 109.47612 * 59.99674 * 14 13 12 38 38 H 1.08997 * 109.46977 * 179.97438 * 14 13 12 39 39 H 1.08998 * 109.47142 * 299.99324 * 14 13 12 40 40 H 1.08998 * 109.49638 * 61.30310 * 15 13 12 41 41 H 1.09004 * 109.49791 * 181.39435 * 15 13 12 42 42 H 1.08996 * 109.58635 * 185.57740 * 16 15 13 43 43 H 1.09000 * 109.58648 * 65.15273 * 16 15 13 44 44 H 0.97003 * 119.99959 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.58694 * 186.59760 * 26 17 16 46 46 H 1.09012 * 109.70804 * 66.24812 * 26 17 16 47 47 H 1.08998 * 109.49735 * 178.60997 * 27 13 12 48 48 H 1.09005 * 109.50095 * 298.67129 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3844 0.0064 5 6 1.9695 3.5927 0.0016 6 6 1.2019 4.8896 0.0033 7 6 3.3572 3.6011 0.0010 8 7 4.0419 2.4799 0.0004 9 6 3.4410 1.2950 -0.0001 10 6 4.2531 0.0598 -0.0013 11 8 3.7074 -1.0264 -0.0014 12 7 5.5986 0.1380 -0.0013 13 6 6.4034 -1.0862 -0.0020 14 6 6.0812 -1.9074 -1.2520 15 6 6.0795 -1.9100 1.2464 16 6 6.3707 -1.0726 2.4957 17 7 7.7586 -0.5945 2.4316 18 6 8.6233 -0.8216 3.4688 19 1 8.4855 -1.6807 4.1085 20 6 9.6771 0.0525 3.6979 21 7 9.6621 1.2555 3.1643 22 14 11.1164 -0.4788 4.7635 23 1 11.7643 -1.6717 4.1615 24 1 12.1019 0.6285 4.8521 25 1 10.6270 -0.8152 6.1246 26 6 8.2010 0.1314 1.2333 27 6 7.8892 -0.7195 -0.0025 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 0.2174 2.3527 0.0110 32 1 1.0164 5.2034 -1.0239 33 1 0.2512 4.7484 0.5174 34 1 1.7829 5.6550 0.5177 35 1 3.8828 4.5446 0.0015 36 1 6.0341 1.0047 -0.0009 37 1 6.3113 -1.3208 -2.1414 38 1 6.6803 -2.8180 -1.2529 39 1 5.0230 -2.1683 -1.2526 40 1 5.0264 -2.1907 1.2339 41 1 6.6959 -2.8089 1.2592 42 1 6.2365 -1.6863 3.3864 43 1 5.6919 -0.2205 2.5308 44 1 10.3983 1.8664 3.3247 45 1 9.2744 0.3122 1.2911 46 1 7.6735 1.0828 1.1642 47 1 8.4886 -1.6295 0.0220 48 1 8.1240 -0.1534 -0.9040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045463571.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:59 Heat of formation + Delta-G solvation = -12.519133 kcal Electronic energy + Delta-G solvation = -30055.361213 eV Core-core repulsion = 26111.509181 eV Total energy + Delta-G solvation = -3943.852031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.03966 -39.57548 -38.35013 -37.08679 -34.25635 -33.96852 -31.75152 -31.09578 -30.63265 -29.78540 -28.26719 -27.31868 -27.25151 -24.03829 -23.69354 -22.76368 -22.15503 -21.26061 -20.36491 -18.49992 -18.15066 -17.47963 -17.27863 -16.58961 -16.10365 -15.28020 -14.80447 -14.72080 -14.54116 -14.26077 -14.11426 -13.89559 -13.77906 -13.49084 -13.29896 -13.13395 -12.98154 -12.90832 -12.72034 -12.43447 -12.23303 -11.65474 -11.64145 -11.61874 -11.49448 -11.20329 -11.09475 -10.82681 -10.63570 -10.29567 -10.18973 -9.96912 -9.77756 -9.70363 -9.61839 -9.49792 -8.99758 -8.56725 -8.40860 -8.29821 -6.56076 -5.70707 -3.11468 0.60579 1.11111 2.98496 3.00945 3.43568 3.48779 3.50709 3.52222 3.93741 4.23170 4.36465 4.55944 4.57905 4.71487 4.78885 4.83652 4.90755 5.21301 5.21738 5.27181 5.31940 5.42216 5.47549 5.56032 5.62327 5.64693 5.74318 5.78545 5.89486 6.12559 6.18191 6.23736 6.32048 6.45329 6.46929 6.54090 6.66129 6.81651 6.85090 6.95098 7.05796 7.10964 7.24057 7.41958 7.69290 7.71435 7.86911 8.16048 8.53637 8.72995 9.30246 9.94291 10.52077 11.37659 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.003446 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.370914 B = 8123.666702 C = 9046.740196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.270 6.270 3 C 0.138 3.862 4 C -0.181 4.181 5 C -0.079 4.079 6 C -0.113 4.113 7 C 0.059 3.941 8 N -0.411 5.411 9 C 0.044 3.956 10 C 0.572 3.428 11 O -0.522 6.522 12 N -0.691 5.691 13 C 0.183 3.817 14 C -0.160 4.160 15 C -0.142 4.142 16 C 0.151 3.849 17 N -0.590 5.590 18 C -0.249 4.249 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.172 3.828 27 C -0.145 4.145 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.143 0.857 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.409 0.591 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.015 0.985 44 H 0.253 0.747 45 H 0.088 0.912 46 H 0.018 0.982 47 H 0.071 0.929 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.622 4.749 -10.458 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.179 6.179 3 C 0.087 3.913 4 C -0.208 4.208 5 C -0.082 4.082 6 C -0.171 4.171 7 C -0.102 4.102 8 N -0.122 5.122 9 C -0.095 4.095 10 C 0.356 3.644 11 O -0.398 6.398 12 N -0.342 5.342 13 C 0.098 3.902 14 C -0.218 4.218 15 C -0.182 4.182 16 C 0.025 3.975 17 N -0.313 5.313 18 C -0.379 4.379 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.046 3.954 27 C -0.185 4.185 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.181 0.819 36 H 0.245 0.755 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.036 0.964 47 H 0.089 0.911 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.860 3.843 -10.414 21.028 hybrid contribution -0.215 0.519 0.603 0.824 sum -18.074 4.362 -9.811 21.023 Atomic orbital electron populations 1.23187 0.78914 1.04515 1.00988 1.86441 1.20562 1.24485 1.86442 1.20048 0.92325 0.85557 0.93336 1.21570 1.00710 0.91329 1.07164 1.20972 0.95279 0.95692 0.96208 1.20799 0.99848 0.93496 1.02922 1.22629 0.90488 0.96566 1.00532 1.67671 1.39650 0.97371 1.07497 1.20899 0.88588 0.93179 1.06852 1.17505 0.82464 0.86920 0.77478 1.90734 1.71920 1.27184 1.49932 1.45978 1.05016 1.10609 1.72613 1.20293 0.90926 0.83943 0.95021 1.22223 1.03218 0.99628 0.96751 1.22389 1.01637 0.98633 0.95551 1.20823 0.87015 0.95093 0.94614 1.44025 1.05808 1.65656 1.15831 1.19162 1.06167 1.04922 1.07651 0.91843 1.25000 1.00701 0.94641 0.99340 1.70024 1.31763 1.04928 1.48072 0.86394 0.82660 0.77503 0.80360 1.21111 1.21714 1.21021 1.20749 1.01224 0.90939 0.82509 1.22521 0.93029 1.02199 1.00721 0.87737 0.92642 0.92738 0.83915 0.90384 0.91158 0.90485 0.81918 0.75456 0.93404 0.92278 0.90879 0.90848 0.91882 0.93254 0.96747 0.93718 0.89347 0.96367 0.91078 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.83 101.05 0.99 1.16 16 2 O -0.27 -3.80 8.56 -40.59 -0.35 -4.15 16 3 C 0.14 1.94 6.71 -38.55 -0.26 1.69 16 4 C -0.18 -1.90 8.80 -39.15 -0.34 -2.24 16 5 C -0.08 -0.77 5.90 -104.41 -0.62 -1.39 16 6 C -0.11 -0.67 10.03 36.00 0.36 -0.31 16 7 C 0.06 0.69 10.85 -17.55 -0.19 0.50 16 8 N -0.41 -6.29 9.54 -9.71 -0.09 -6.39 16 9 C 0.04 0.72 6.76 -82.88 -0.56 0.16 16 10 C 0.57 10.58 7.22 -12.34 -0.09 10.50 16 11 O -0.52 -10.43 11.35 -16.63 -0.19 -10.62 16 12 N -0.69 -12.68 4.09 -48.51 -0.20 -12.88 16 13 C 0.18 3.40 0.66 -131.78 -0.09 3.31 16 14 C -0.16 -2.64 8.40 37.16 0.31 -2.32 16 15 C -0.14 -2.86 4.67 -26.61 -0.12 -2.99 16 16 C 0.15 3.49 6.26 -3.71 -0.02 3.47 16 17 N -0.59 -15.26 3.00 -172.29 -0.52 -15.77 16 18 C -0.25 -7.03 9.59 -15.06 -0.14 -7.17 16 19 H 0.06 1.77 7.89 -52.49 -0.41 1.36 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 21 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16 22 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.17 4.11 5.03 -3.69 -0.02 4.10 16 27 C -0.15 -2.82 4.96 -26.59 -0.13 -2.95 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.38 7.68 -51.93 -0.40 -0.02 16 30 H 0.05 0.35 7.71 -51.93 -0.40 -0.05 16 31 H 0.14 1.04 6.46 -52.49 -0.34 0.70 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.41 7.55 6.59 -40.82 -0.27 7.28 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.29 6.17 -51.93 -0.32 0.97 16 40 H 0.07 1.50 6.20 -51.93 -0.32 1.17 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.01 0.36 7.74 -51.93 -0.40 -0.05 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.09 2.36 6.03 -51.93 -0.31 2.05 16 46 H 0.02 0.46 6.94 -51.92 -0.36 0.10 16 47 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -33.38 376.09 -8.40 -41.78 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.31 Total: 5.64 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.01 Total: 5.47 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.19 Total: -60.81 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.54 Total: -14.77 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.38 -8.40 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045463571.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.265 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds