Wall clock time and date at job start Tue Mar 31 2020 18:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 110.38494 * 2 1 4 4 N 1.46497 * 109.46985 * 302.23007 * 3 2 1 5 5 C 1.36946 * 119.99815 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99904 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99826 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99849 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46835 * 90.00115 * 9 7 5 11 11 H 1.48501 * 109.46971 * 210.00250 * 9 7 5 12 12 H 1.48498 * 109.46943 * 330.00437 * 9 7 5 13 13 C 1.54277 * 110.34542 * 122.22929 * 2 1 3 14 14 C 1.54397 * 104.96142 * 118.87408 * 13 2 1 15 15 N 1.48151 * 104.61301 * 336.13352 * 14 13 2 16 16 C 1.34770 * 127.83726 * 219.56382 * 15 14 13 17 17 O 1.21284 * 120.00350 * 180.02562 * 16 15 14 18 18 C 1.50707 * 120.00067 * 0.02571 * 16 15 14 19 19 O 1.42902 * 109.47075 * 180.02562 * 18 16 15 20 20 C 1.42897 * 113.99514 * 180.02562 * 19 18 16 21 21 C 1.50704 * 109.46782 * 179.97438 * 20 19 18 22 22 C 1.38674 * 120.41687 * 89.99907 * 21 20 19 23 23 C 1.38627 * 118.41978 * 179.97438 * 22 21 20 24 24 C 1.38226 * 119.16320 * 0.02562 * 23 22 21 25 25 N 1.31857 * 120.75893 * 0.02562 * 24 23 22 26 26 C 1.31880 * 121.73116 * 359.70084 * 25 24 23 27 27 C 1.48144 * 104.32233 * 39.58575 * 15 14 13 28 28 H 1.08999 * 109.47402 * 297.76463 * 1 2 3 29 29 H 1.08999 * 109.47189 * 57.77265 * 1 2 3 30 30 H 1.09005 * 109.47208 * 177.76687 * 1 2 3 31 31 H 1.08995 * 109.47293 * 62.23365 * 3 2 1 32 32 H 1.09002 * 109.47046 * 182.23593 * 3 2 1 33 33 H 0.97000 * 120.00682 * 0.02562 * 4 3 2 34 34 H 0.97004 * 119.99823 * 180.02562 * 8 7 5 35 35 H 1.08996 * 110.34449 * 0.02562 * 13 2 1 36 36 H 1.09000 * 110.34806 * 237.74409 * 13 2 1 37 37 H 1.08992 * 110.40719 * 94.91736 * 14 13 2 38 38 H 1.09000 * 110.40697 * 217.35430 * 14 13 2 39 39 H 1.08996 * 109.46737 * 300.00106 * 18 16 15 40 40 H 1.09003 * 109.46744 * 60.00198 * 18 16 15 41 41 H 1.08997 * 109.47533 * 299.99283 * 20 19 18 42 42 H 1.08993 * 109.47525 * 60.00246 * 20 19 18 43 43 H 1.08002 * 120.79021 * 359.97438 * 22 21 20 44 44 H 1.08001 * 120.42050 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.62233 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.62050 * 180.31415 * 26 25 24 47 47 H 1.09004 * 110.40486 * 201.62525 * 27 15 14 48 48 H 1.09003 * 110.50809 * 79.25233 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.5425 2.1485 -1.1684 5 6 1.8860 3.4573 -1.3798 6 1 2.5408 3.9626 -0.6854 7 6 1.3933 4.1339 -2.4871 8 7 0.5957 3.5179 -3.3337 9 14 1.8624 5.9189 -2.7759 10 1 3.0972 5.9793 -3.5986 11 1 0.7587 6.6118 -3.4880 12 1 2.1042 6.5845 -1.4706 13 6 2.0664 -0.7714 1.2236 14 6 2.8803 -1.9421 0.6313 15 7 2.3140 -2.1437 -0.7227 16 6 2.0778 -3.3104 -1.3548 17 8 1.6066 -3.3102 -2.4723 18 6 2.3993 -4.6154 -0.6729 19 8 2.0629 -5.7010 -1.5392 20 6 2.3296 -6.9908 -0.9850 21 6 1.9386 -8.0548 -1.9780 22 6 2.8582 -8.5221 -2.9049 23 6 2.4544 -9.5018 -3.7987 24 6 1.1577 -9.9765 -3.7372 25 7 0.3097 -9.5079 -2.8428 26 6 0.6605 -8.5801 -1.9738 27 6 2.0667 -0.7720 -1.2245 28 1 -0.3634 0.4787 0.9093 29 1 -0.3633 0.5480 -0.8693 30 1 -0.3634 -1.0269 -0.0400 31 1 1.7408 1.9416 0.9093 32 1 3.1521 1.4171 -0.0401 33 1 0.9541 1.6948 -1.7919 34 1 0.2517 3.9907 -4.1077 35 1 1.2399 -1.1508 1.8245 36 1 2.7096 -0.1287 1.8248 37 1 3.9355 -1.6769 0.5664 38 1 2.7496 -2.8399 1.2355 39 1 3.4639 -4.6518 -0.4418 40 1 1.8242 -4.6945 0.2497 41 1 3.3926 -7.0768 -0.7596 42 1 1.7525 -7.1193 -0.0693 43 1 3.8650 -8.1321 -2.9297 44 1 3.1443 -9.8892 -4.5338 45 1 0.8351 -10.7394 -4.4303 46 1 -0.0603 -8.2244 -1.2525 47 1 1.3223 -0.7870 -2.0206 48 1 2.9938 -0.3227 -1.5807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569691663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:36 Heat of formation + Delta-G solvation = -23.706714 kcal Electronic energy + Delta-G solvation = -27818.438240 eV Core-core repulsion = 23874.101078 eV Total energy + Delta-G solvation = -3944.337161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.56466 -40.13550 -38.52051 -37.34374 -34.80951 -33.32060 -32.73241 -32.11905 -30.47831 -29.32108 -28.86578 -26.73220 -25.99578 -24.93068 -23.94021 -23.53394 -22.40572 -22.06316 -19.50785 -18.79713 -17.71597 -17.32325 -17.10470 -17.05997 -16.48674 -16.28338 -15.79616 -15.46891 -15.16516 -14.51764 -14.20007 -14.11494 -14.08471 -13.83649 -13.49074 -13.47714 -13.41722 -13.03912 -12.72363 -12.43806 -12.36436 -12.27920 -12.07904 -11.76775 -11.53642 -11.43826 -10.99972 -10.83021 -10.55698 -10.51196 -10.28009 -10.22074 -10.14779 -9.94222 -9.79916 -9.73043 -9.62594 -9.42801 -8.87317 -8.62853 -6.91327 -5.74844 -3.04037 0.64756 0.91443 2.59286 2.62628 3.36251 3.44538 3.49286 3.51453 3.77719 4.10182 4.30426 4.36641 4.49855 4.57818 4.59707 4.62494 4.64950 4.76500 4.81386 4.88742 4.93746 4.96166 5.01562 5.23629 5.29659 5.38785 5.38915 5.47290 5.60311 5.71944 5.73571 5.84008 5.85153 5.97202 6.01951 6.09649 6.17375 6.23257 6.30275 6.40558 6.52060 6.64868 6.69801 6.76480 6.84002 7.58814 7.60397 7.70689 8.20442 8.43581 9.54823 10.12180 10.46347 11.47751 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.001941 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.253334 B =14420.893019 C =15136.420567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.080 4.080 3 C 0.168 3.832 4 N -0.731 5.731 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.125 4.125 14 C 0.099 3.901 15 N -0.623 5.623 16 C 0.531 3.469 17 O -0.517 6.517 18 C 0.050 3.950 19 O -0.356 6.356 20 C 0.106 3.894 21 C -0.142 4.142 22 C -0.052 4.052 23 C -0.176 4.176 24 C 0.103 3.897 25 N -0.488 5.488 26 C 0.123 3.877 27 C 0.121 3.879 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.157 0.843 46 H 0.157 0.843 47 H 0.086 0.914 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.528 -26.316 10.068 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.081 4.081 3 C 0.040 3.960 4 N -0.376 5.376 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.164 4.164 14 C -0.024 4.024 15 N -0.359 5.359 16 C 0.318 3.682 17 O -0.392 6.392 18 C -0.030 4.030 19 O -0.274 6.274 20 C 0.029 3.971 21 C -0.144 4.144 22 C -0.078 4.078 23 C -0.196 4.196 24 C -0.054 4.054 25 N -0.196 5.196 26 C -0.035 4.035 27 C 0.000 4.000 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.174 0.826 46 H 0.174 0.826 47 H 0.104 0.896 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.372 -26.582 9.230 28.647 hybrid contribution 1.138 1.260 -0.152 1.704 sum 6.510 -25.322 9.078 27.676 Atomic orbital electron populations 1.21786 0.93508 1.00601 1.02969 1.21690 0.96681 0.96177 0.93558 1.20718 0.95698 0.87970 0.91628 1.42417 1.58252 1.10860 1.26098 1.19200 1.23865 0.87896 1.06282 0.91217 1.24749 1.00153 0.98311 0.97722 1.69659 1.36986 1.36281 1.15022 0.86199 0.77435 0.84924 0.77656 1.21768 1.21810 1.20815 1.22625 0.99872 0.96293 0.97565 1.22458 0.98045 0.98885 0.82994 1.48977 1.63270 1.05883 1.17774 1.19695 0.78907 0.83538 0.86076 1.90776 1.43177 1.86482 1.18741 1.22183 1.00971 0.86306 0.93508 1.88115 1.85844 1.12368 1.41118 1.21257 1.00082 0.81593 0.94199 1.20562 0.95873 0.98623 0.99328 1.21546 0.99893 0.94075 0.92335 1.22172 0.98165 0.98741 1.00512 1.22859 0.89850 0.97483 0.95178 1.67745 1.36571 1.11111 1.04162 1.22724 0.93601 0.91523 0.95603 1.22493 1.01883 0.78636 0.96998 0.92668 0.91118 0.93690 0.95923 0.96159 0.78020 0.93459 0.90858 0.89925 0.90735 0.90802 0.90287 0.90205 0.91896 0.91699 0.84611 0.84491 0.82584 0.82597 0.89593 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.07 37.16 0.30 -1.80 16 2 C -0.08 -1.22 0.73 -153.11 -0.11 -1.33 16 3 C 0.17 3.18 4.87 -4.04 -0.02 3.16 16 4 N -0.73 -17.99 5.12 -59.91 -0.31 -18.30 16 5 C -0.24 -6.66 9.99 -15.05 -0.15 -6.81 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 9 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C -0.12 -1.35 6.30 -25.33 -0.16 -1.51 16 14 C 0.10 0.94 6.92 -2.40 -0.02 0.93 16 15 N -0.62 -8.50 3.32 -169.30 -0.56 -9.06 16 16 C 0.53 7.93 7.99 -10.98 -0.09 7.84 16 17 O -0.52 -10.48 16.77 -14.36 -0.24 -10.72 16 18 C 0.05 0.50 5.40 36.01 0.19 0.69 16 19 O -0.36 -4.27 9.86 -55.14 -0.54 -4.82 16 20 C 0.11 0.82 6.09 36.01 0.22 1.04 16 21 C -0.14 -1.28 5.53 -104.48 -0.58 -1.86 16 22 C -0.05 -0.42 9.86 -39.28 -0.39 -0.81 16 23 C -0.18 -1.29 10.11 -39.44 -0.40 -1.69 16 24 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 25 N -0.49 -5.21 10.36 -13.25 -0.14 -5.35 16 26 C 0.12 1.20 10.86 -17.55 -0.19 1.00 16 27 C 0.12 2.02 5.71 -2.41 -0.01 2.00 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.35 6.74 -51.93 -0.35 1.00 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 33 H 0.39 10.08 6.18 -40.82 -0.25 9.83 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.07 0.72 7.71 -51.93 -0.40 0.32 16 36 H 0.08 0.81 7.71 -51.93 -0.40 0.41 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.48 7.30 -51.93 -0.38 0.10 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.58 7.95 -51.93 -0.41 0.17 16 41 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 42 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.09 1.68 7.60 -51.93 -0.39 1.29 16 48 H 0.08 1.39 7.83 -51.93 -0.41 0.99 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -36.55 396.87 -9.41 -45.96 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.61 Total: 5.45 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.69 Total: 1.05 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.28 Total: -60.32 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.78 Total: -15.54 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.55 -9.41 -45.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569691663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.253 kcal (2) G-P(sol) polarization free energy of solvation -36.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds