Wall clock time and date at job start Tue Mar 31 2020 18:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 110.38494 * 2 1 4 4 N 1.46497 * 109.46985 * 302.23007 * 3 2 1 5 5 C 1.36946 * 119.99815 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99904 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99826 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99849 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46835 * 90.00115 * 9 7 5 11 11 H 1.48501 * 109.46971 * 210.00250 * 9 7 5 12 12 H 1.48498 * 109.46943 * 330.00437 * 9 7 5 13 13 C 1.54277 * 110.34542 * 122.22929 * 2 1 3 14 14 C 1.54397 * 104.96142 * 118.87408 * 13 2 1 15 15 N 1.48151 * 104.61301 * 336.13352 * 14 13 2 16 16 C 1.34770 * 127.83726 * 219.56382 * 15 14 13 17 17 O 1.21284 * 120.00350 * 180.02562 * 16 15 14 18 18 C 1.50707 * 120.00067 * 0.02571 * 16 15 14 19 19 O 1.42902 * 109.47075 * 180.02562 * 18 16 15 20 20 C 1.42897 * 113.99514 * 180.02562 * 19 18 16 21 21 C 1.50704 * 109.46782 * 179.97438 * 20 19 18 22 22 C 1.38674 * 120.41687 * 89.99907 * 21 20 19 23 23 C 1.38627 * 118.41978 * 179.97438 * 22 21 20 24 24 C 1.38226 * 119.16320 * 0.02562 * 23 22 21 25 25 N 1.31857 * 120.75893 * 0.02562 * 24 23 22 26 26 C 1.31880 * 121.73116 * 359.70084 * 25 24 23 27 27 C 1.48144 * 104.32233 * 39.58575 * 15 14 13 28 28 H 1.08999 * 109.47402 * 297.76463 * 1 2 3 29 29 H 1.08999 * 109.47189 * 57.77265 * 1 2 3 30 30 H 1.09005 * 109.47208 * 177.76687 * 1 2 3 31 31 H 1.08995 * 109.47293 * 62.23365 * 3 2 1 32 32 H 1.09002 * 109.47046 * 182.23593 * 3 2 1 33 33 H 0.97000 * 120.00682 * 0.02562 * 4 3 2 34 34 H 0.97004 * 119.99823 * 180.02562 * 8 7 5 35 35 H 1.08996 * 110.34449 * 0.02562 * 13 2 1 36 36 H 1.09000 * 110.34806 * 237.74409 * 13 2 1 37 37 H 1.08992 * 110.40719 * 94.91736 * 14 13 2 38 38 H 1.09000 * 110.40697 * 217.35430 * 14 13 2 39 39 H 1.08996 * 109.46737 * 300.00106 * 18 16 15 40 40 H 1.09003 * 109.46744 * 60.00198 * 18 16 15 41 41 H 1.08997 * 109.47533 * 299.99283 * 20 19 18 42 42 H 1.08993 * 109.47525 * 60.00246 * 20 19 18 43 43 H 1.08002 * 120.79021 * 359.97438 * 22 21 20 44 44 H 1.08001 * 120.42050 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.62233 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.62050 * 180.31415 * 26 25 24 47 47 H 1.09004 * 110.40486 * 201.62525 * 27 15 14 48 48 H 1.09003 * 110.50809 * 79.25233 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.5425 2.1485 -1.1684 5 6 1.8860 3.4573 -1.3798 6 1 2.5408 3.9626 -0.6854 7 6 1.3933 4.1339 -2.4871 8 7 0.5957 3.5179 -3.3337 9 14 1.8624 5.9189 -2.7759 10 1 3.0972 5.9793 -3.5986 11 1 0.7587 6.6118 -3.4880 12 1 2.1042 6.5845 -1.4706 13 6 2.0664 -0.7714 1.2236 14 6 2.8803 -1.9421 0.6313 15 7 2.3140 -2.1437 -0.7227 16 6 2.0778 -3.3104 -1.3548 17 8 1.6066 -3.3102 -2.4723 18 6 2.3993 -4.6154 -0.6729 19 8 2.0629 -5.7010 -1.5392 20 6 2.3296 -6.9908 -0.9850 21 6 1.9386 -8.0548 -1.9780 22 6 2.8582 -8.5221 -2.9049 23 6 2.4544 -9.5018 -3.7987 24 6 1.1577 -9.9765 -3.7372 25 7 0.3097 -9.5079 -2.8428 26 6 0.6605 -8.5801 -1.9738 27 6 2.0667 -0.7720 -1.2245 28 1 -0.3634 0.4787 0.9093 29 1 -0.3633 0.5480 -0.8693 30 1 -0.3634 -1.0269 -0.0400 31 1 1.7408 1.9416 0.9093 32 1 3.1521 1.4171 -0.0401 33 1 0.9541 1.6948 -1.7919 34 1 0.2517 3.9907 -4.1077 35 1 1.2399 -1.1508 1.8245 36 1 2.7096 -0.1287 1.8248 37 1 3.9355 -1.6769 0.5664 38 1 2.7496 -2.8399 1.2355 39 1 3.4639 -4.6518 -0.4418 40 1 1.8242 -4.6945 0.2497 41 1 3.3926 -7.0768 -0.7596 42 1 1.7525 -7.1193 -0.0693 43 1 3.8650 -8.1321 -2.9297 44 1 3.1443 -9.8892 -4.5338 45 1 0.8351 -10.7394 -4.4303 46 1 -0.0603 -8.2244 -1.2525 47 1 1.3223 -0.7870 -2.0206 48 1 2.9938 -0.3227 -1.5807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569691663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:36 Heat of formation + Delta-G solvation = -48.832484 kcal Electronic energy + Delta-G solvation = -27819.527775 eV Core-core repulsion = 23874.101078 eV Total energy + Delta-G solvation = -3945.426696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.32984 -41.08826 -39.54328 -38.32588 -36.45045 -34.39945 -33.92675 -32.72123 -32.22183 -30.41419 -29.82671 -27.73890 -27.32243 -26.20884 -24.95930 -24.55029 -23.47029 -22.98970 -20.55627 -20.12643 -19.12827 -18.39912 -17.96142 -17.74402 -17.42793 -17.22563 -16.68550 -16.66650 -16.17129 -15.96061 -15.43216 -15.39417 -15.11707 -14.83297 -14.74672 -14.49871 -14.42961 -14.01037 -13.92859 -13.56150 -13.46125 -13.21206 -13.11369 -13.00453 -12.84194 -12.71991 -12.44818 -12.33746 -12.15142 -12.05404 -11.74265 -11.50905 -11.32819 -10.97468 -10.90709 -10.79086 -10.77567 -10.41536 -10.05428 -9.77253 -8.97062 -7.93456 -5.21975 0.03686 0.30792 1.46627 1.48742 1.54313 1.57134 1.66151 2.56715 2.66934 3.11763 3.38174 3.41755 3.55390 3.68883 3.73229 3.85286 3.87328 3.90525 4.04917 4.06895 4.16951 4.22946 4.28170 4.34184 4.34305 4.42635 4.47356 4.49803 4.66082 4.70686 4.72095 4.80550 4.83364 4.88754 4.96134 5.05245 5.08950 5.14771 5.15068 5.27326 5.33009 5.41593 5.48046 5.52504 5.73448 6.04210 6.28277 6.56604 6.97809 7.11552 7.34480 8.12785 8.33476 9.30313 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.001941 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.253334 B =14420.893019 C =15136.420567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C 0.165 3.835 4 N -0.746 5.746 5 C -0.239 4.239 6 H 0.081 0.919 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.974 3.026 10 H -0.289 1.289 11 H -0.299 1.299 12 H -0.265 1.265 13 C -0.116 4.116 14 C 0.098 3.902 15 N -0.619 5.619 16 C 0.519 3.481 17 O -0.589 6.589 18 C 0.060 3.940 19 O -0.397 6.397 20 C 0.105 3.895 21 C -0.155 4.155 22 C -0.064 4.064 23 C -0.175 4.175 24 C 0.088 3.912 25 N -0.520 5.520 26 C 0.101 3.899 27 C 0.124 3.876 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.372 0.628 34 H 0.249 0.751 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.155 0.845 44 H 0.165 0.835 45 H 0.178 0.822 46 H 0.164 0.836 47 H 0.039 0.961 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.840 -27.541 13.384 31.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 C 0.039 3.961 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.098 0.902 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.803 3.197 10 H -0.216 1.216 11 H -0.226 1.226 12 H -0.190 1.190 13 C -0.154 4.154 14 C -0.023 4.023 15 N -0.354 5.354 16 C 0.309 3.691 17 O -0.468 6.468 18 C -0.019 4.019 19 O -0.317 6.317 20 C 0.029 3.971 21 C -0.157 4.157 22 C -0.090 4.090 23 C -0.195 4.195 24 C -0.069 4.069 25 N -0.229 5.229 26 C -0.055 4.055 27 C 0.001 3.999 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.173 0.827 44 H 0.182 0.818 45 H 0.195 0.805 46 H 0.181 0.819 47 H 0.058 0.942 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.737 -27.817 12.651 31.523 hybrid contribution 0.449 1.585 -1.167 2.019 sum 8.186 -26.232 11.484 29.783 Atomic orbital electron populations 1.21704 0.94294 1.00620 1.01583 1.21575 0.95905 0.94423 0.95480 1.20937 0.95925 0.89696 0.89556 1.42684 1.58162 1.10455 1.27605 1.19678 1.22539 0.89115 1.05776 0.90155 1.25609 1.01032 1.02625 0.98089 1.69845 1.39044 1.37859 1.15702 0.85124 0.76561 0.80054 0.77934 1.21637 1.22625 1.18979 1.22644 1.00988 0.96355 0.95453 1.22812 0.98306 1.00453 0.80728 1.49060 1.62713 1.04299 1.19290 1.20858 0.77414 0.85352 0.85473 1.90742 1.46454 1.87577 1.22077 1.22272 1.03679 0.82774 0.93175 1.88063 1.86582 1.14097 1.42966 1.21468 1.02063 0.79322 0.94236 1.20825 0.95714 0.99059 1.00068 1.21925 1.00751 0.94151 0.92152 1.22510 0.98164 0.98142 1.00634 1.23318 0.90345 0.98008 0.95193 1.67720 1.37868 1.12122 1.05236 1.22972 0.94502 0.91958 0.96086 1.22176 0.99690 0.81358 0.96713 0.91255 0.95401 0.92695 0.95007 0.95335 0.79544 0.94242 0.88820 0.87985 0.89104 0.86061 0.86518 0.86495 0.89272 0.89442 0.82733 0.81766 0.80518 0.81896 0.94201 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.07 71.98 0.58 -3.43 16 2 C -0.07 -2.15 0.73 -51.28 -0.04 -2.19 16 3 C 0.17 6.13 4.87 86.38 0.42 6.55 16 4 N -0.75 -37.67 5.12 -343.44 -1.76 -39.43 16 5 C -0.24 -13.33 9.99 84.03 0.84 -12.49 16 6 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 7 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 8 N -0.97 -61.69 13.06 21.65 0.28 -61.40 16 9 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C -0.12 -2.03 6.30 31.50 0.20 -1.83 16 14 C 0.10 1.40 6.92 86.54 0.60 2.00 16 15 N -0.62 -15.98 3.32 -807.94 -2.68 -18.66 16 16 C 0.52 15.09 7.99 87.66 0.70 15.79 16 17 O -0.59 -25.06 16.77 15.99 0.27 -24.79 16 18 C 0.06 0.98 5.40 71.24 0.38 1.36 16 19 O -0.40 -8.79 9.86 -129.94 -1.28 -10.07 16 20 C 0.11 1.34 6.09 71.24 0.43 1.77 16 21 C -0.15 -2.61 5.53 -19.77 -0.11 -2.72 16 22 C -0.06 -0.94 9.86 22.47 0.22 -0.72 16 23 C -0.18 -2.34 10.11 22.36 0.23 -2.12 16 24 C 0.09 1.43 11.18 84.69 0.95 2.38 16 25 N -0.52 -11.25 10.36 -195.84 -2.03 -13.28 16 26 C 0.10 1.97 10.86 84.67 0.92 2.89 16 27 C 0.12 4.25 5.71 86.53 0.49 4.74 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 29 H 0.03 1.11 6.74 -2.39 -0.02 1.10 16 30 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.03 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.37 20.64 6.18 -92.71 -0.57 20.07 16 34 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.09 1.33 7.71 -2.39 -0.02 1.31 16 36 H 0.10 1.47 7.71 -2.39 -0.02 1.45 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.12 0.69 7.30 -2.39 -0.02 0.68 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.12 1.05 7.95 -2.39 -0.02 1.03 16 41 H 0.09 0.64 8.10 -2.39 -0.02 0.62 16 42 H 0.09 0.68 8.09 -2.39 -0.02 0.66 16 43 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 44 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 46 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 47 H 0.04 1.71 7.60 -2.39 -0.02 1.69 16 48 H 0.06 2.28 7.83 -2.39 -0.02 2.26 16 Total: -1.00 -87.08 396.87 2.50 -84.59 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.38 Total: 26.46 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 7.29 Total: 7.67 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -6.18 Total: -132.78 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -1.01 Total: -34.85 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -87.08 2.50 -84.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569691663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.757 kcal (2) G-P(sol) polarization free energy of solvation -87.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds