Wall clock time and date at job start Tue Mar 31 2020 17:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38824 * 120.75610 * 2 1 4 4 C 1.38051 * 119.28717 * 180.02562 * 3 2 1 5 5 N 1.31970 * 120.83341 * 359.73615 * 4 3 2 6 6 C 1.32241 * 121.64646 * 0.53009 * 5 4 3 7 7 O 1.35673 * 119.68572 * 179.74969 * 6 5 4 8 8 C 1.42901 * 116.99898 * 359.72842 * 7 6 5 9 9 C 1.53041 * 109.46339 * 149.99710 * 8 7 6 10 10 C 1.53189 * 109.31621 * 181.37282 * 9 8 7 11 11 N 1.46933 * 108.77196 * 305.36698 * 10 9 8 12 12 C 1.34779 * 120.62793 * 233.58162 * 11 10 9 13 13 O 1.21586 * 119.99900 * 5.22563 * 12 11 10 14 14 N 1.34778 * 119.99935 * 185.21977 * 12 11 10 15 15 C 1.46502 * 119.99582 * 175.01517 * 14 12 11 16 16 C 1.53000 * 109.46534 * 180.02562 * 15 14 12 17 17 C 1.50704 * 109.46817 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00260 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99579 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00586 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99736 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46761 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47156 * 119.99559 * 21 19 17 24 24 H 1.48491 * 109.47172 * 239.99879 * 21 19 17 25 25 C 1.46924 * 118.73982 * 53.85715 * 11 10 9 26 26 C 1.53042 * 109.44933 * 270.05998 * 8 7 6 27 27 C 1.38377 * 120.75581 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47553 * 269.98213 * 1 2 3 29 29 H 1.09005 * 109.47013 * 29.98593 * 1 2 3 30 30 H 1.08998 * 109.47048 * 149.97843 * 1 2 3 31 31 H 1.07996 * 120.35722 * 0.03324 * 3 2 1 32 32 H 1.07998 * 119.58328 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.46059 * 30.02479 * 8 7 6 34 34 H 1.09006 * 109.49766 * 61.41850 * 9 8 7 35 35 H 1.09004 * 109.52237 * 301.33944 * 9 8 7 36 36 H 1.08993 * 109.58861 * 185.58030 * 10 9 8 37 37 H 1.08997 * 109.70246 * 65.21948 * 10 9 8 38 38 H 0.96998 * 119.99957 * 355.01868 * 14 12 11 39 39 H 1.08999 * 109.46950 * 60.00577 * 15 14 12 40 40 H 1.08994 * 109.47292 * 299.99762 * 15 14 12 41 41 H 1.09003 * 109.47469 * 300.00278 * 16 15 14 42 42 H 1.08999 * 109.47112 * 60.00577 * 16 15 14 43 43 H 0.96999 * 120.00270 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.58342 * 65.93187 * 25 11 10 45 45 H 1.09000 * 109.58624 * 186.35188 * 25 11 10 46 46 H 1.08997 * 109.49669 * 298.57260 * 26 8 7 47 47 H 1.08996 * 109.49534 * 58.66512 * 26 8 7 48 48 H 1.08001 * 120.44334 * 359.96450 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1930 0.0000 4 6 3.5970 1.1576 -0.0005 5 7 4.2442 0.0075 0.0042 6 6 3.6033 -1.1493 -0.0009 7 8 4.3087 -2.3082 -0.0009 8 6 5.7336 -2.2004 -0.0013 9 6 6.3366 -3.4078 0.7202 10 6 7.8622 -3.2717 0.7478 11 7 8.3454 -3.0873 -0.6275 12 6 9.3027 -3.8906 -1.1324 13 8 9.7073 -4.8361 -0.4839 14 7 9.8114 -3.6457 -2.3562 15 6 10.9266 -4.4510 -2.8603 16 6 11.3100 -3.9705 -4.2614 17 6 12.4576 -4.7984 -4.7799 18 1 12.8717 -5.5884 -4.1711 19 6 12.9787 -4.5471 -6.0314 20 7 12.4741 -3.5853 -6.7730 21 14 14.4008 -5.5738 -6.6743 22 1 14.7822 -6.5843 -5.6551 23 1 13.9892 -6.2617 -7.9243 24 1 15.5617 -4.6912 -6.9542 25 6 7.7696 -2.0069 -1.4397 26 6 6.2412 -2.1607 -1.4446 27 6 2.2147 -1.1892 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6952 2.1386 0.0005 32 1 4.1541 2.0828 -0.0001 33 1 6.0288 -1.2856 0.5127 34 1 6.0623 -4.3213 0.1925 35 1 5.9566 -3.4493 1.7410 36 1 8.3020 -4.1744 1.1717 37 1 8.1433 -2.4095 1.3525 38 1 9.4392 -2.9364 -2.9031 39 1 10.6279 -5.4983 -2.9041 40 1 11.7822 -4.3447 -2.1935 41 1 10.4545 -4.0764 -4.9286 42 1 11.6089 -2.9232 -4.2173 43 1 12.8405 -3.4088 -7.6536 44 1 8.0413 -1.0425 -1.0103 45 1 8.1484 -2.0748 -2.4595 46 1 5.9678 -3.0858 -1.9519 47 1 5.7931 -1.3140 -1.9646 48 1 1.6943 -2.1356 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273561183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:14 Heat of formation + Delta-G solvation = -38.310189 kcal Electronic energy + Delta-G solvation = -27861.834845 eV Core-core repulsion = 23916.864429 eV Total energy + Delta-G solvation = -3944.970415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09545 -40.12743 -38.68474 -36.66484 -34.86924 -34.21656 -33.02669 -32.27771 -31.23646 -30.49812 -29.27935 -28.33945 -25.52472 -24.39287 -23.85171 -23.38760 -22.33046 -21.20977 -20.73727 -19.43765 -18.34360 -17.99710 -17.08594 -16.44127 -16.30789 -15.94010 -15.72169 -15.39908 -15.02161 -14.67004 -14.45312 -14.41762 -14.11665 -14.07299 -13.69534 -13.52062 -13.30970 -13.13397 -12.94368 -12.64473 -12.53402 -12.30885 -12.18448 -12.10126 -11.95239 -11.47330 -11.15004 -11.03493 -10.82286 -10.66561 -10.59381 -10.31196 -9.93501 -9.91673 -9.85621 -9.52535 -9.22811 -8.81956 -8.75293 -8.45394 -8.18650 -6.07712 -4.10097 0.80026 0.90004 2.67246 2.90276 3.29834 3.37375 3.41145 3.42929 3.56242 3.94942 4.21486 4.28067 4.43600 4.50758 4.52441 4.55932 4.72492 4.76108 4.84945 4.96442 5.03107 5.05348 5.10012 5.22024 5.29517 5.29983 5.42337 5.44366 5.47240 5.55349 5.57849 5.66296 5.77825 5.86244 5.92233 5.99882 6.17149 6.28814 6.42430 6.59005 6.79602 7.01026 7.02083 7.17368 7.54317 7.57732 7.65078 7.91633 8.26283 8.38507 8.94021 8.99643 9.54607 11.04019 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020640 B = 0.001912 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.263547 B =14637.396676 C =15482.779353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.009 4.009 3 C -0.218 4.218 4 C 0.144 3.856 5 N -0.543 5.543 6 C 0.330 3.670 7 O -0.300 6.300 8 C 0.094 3.906 9 C -0.132 4.132 10 C 0.136 3.864 11 N -0.638 5.638 12 C 0.704 3.296 13 O -0.595 6.595 14 N -0.739 5.739 15 C 0.139 3.861 16 C 0.012 3.988 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.118 3.882 26 C -0.148 4.148 27 C -0.197 4.197 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.392 0.608 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.261 0.739 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.075 11.753 15.690 31.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.017 4.017 3 C -0.239 4.239 4 C -0.011 4.011 5 N -0.267 5.267 6 C 0.152 3.848 7 O -0.207 6.207 8 C 0.038 3.962 9 C -0.170 4.170 10 C 0.013 3.987 11 N -0.377 5.377 12 C 0.405 3.595 13 O -0.474 6.474 14 N -0.394 5.394 15 C 0.016 3.984 16 C -0.025 4.025 17 C -0.558 4.558 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.006 4.006 26 C -0.187 4.187 27 C -0.218 4.218 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.153 0.847 32 H 0.176 0.824 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.228 0.772 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.861 10.814 15.981 30.686 hybrid contribution -0.240 0.122 -0.868 0.908 sum -24.101 10.935 15.113 30.477 Atomic orbital electron populations 1.20847 0.89847 1.03591 1.03088 1.20132 0.96734 0.92105 0.92696 1.21870 0.95438 0.98699 1.07848 1.22421 0.91705 0.94809 0.92162 1.67302 1.41393 0.98298 1.19726 1.19832 0.88988 0.85229 0.90798 1.86311 1.21206 1.26268 1.86931 1.22368 0.76529 1.00395 0.96919 1.22079 0.95638 0.98015 1.01303 1.21327 0.91627 1.03417 0.82362 1.47332 1.41433 1.34348 1.14556 1.15951 0.79330 0.82029 0.82163 1.90872 1.64485 1.30932 1.61124 1.45720 1.38103 1.39506 1.16085 1.21606 0.85625 0.93873 0.97291 1.19333 0.97045 0.97243 0.88897 1.21094 1.16174 1.17373 1.01162 0.92135 1.25000 0.97215 0.95341 0.96792 1.69963 1.41835 1.30722 1.10836 0.86455 0.82039 0.80222 0.78843 1.19556 1.20964 1.20965 1.21616 0.92009 0.90665 0.96310 1.22417 0.95990 1.03608 0.96676 1.20950 0.91439 0.99744 1.09653 0.90261 0.90740 0.90789 0.84693 0.82364 0.88978 0.90337 0.90034 0.87979 0.91647 0.77215 0.92691 0.92800 0.96001 0.95984 0.92935 0.90950 0.89553 0.90611 0.90265 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.06 36.01 0.36 -0.11 16 2 C -0.01 -0.06 5.91 -104.35 -0.62 -0.68 16 3 C -0.22 -1.41 9.81 -39.43 -0.39 -1.80 16 4 C 0.14 1.11 11.18 -17.56 -0.20 0.91 16 5 N -0.54 -5.51 8.64 -13.33 -0.12 -5.62 16 6 C 0.33 3.48 7.45 -17.12 -0.13 3.35 16 7 O -0.30 -3.38 9.76 -18.72 -0.18 -3.56 16 8 C 0.09 0.98 2.34 -26.69 -0.06 0.92 16 9 C -0.13 -1.35 5.73 -26.61 -0.15 -1.50 16 10 C 0.14 1.60 6.44 -3.71 -0.02 1.57 16 11 N -0.64 -8.89 2.97 -178.24 -0.53 -9.42 16 12 C 0.70 12.93 8.30 -86.91 -0.72 12.21 16 13 O -0.60 -13.09 15.77 5.29 0.08 -13.00 16 14 N -0.74 -13.71 5.47 -65.23 -0.36 -14.07 16 15 C 0.14 3.06 5.62 -4.04 -0.02 3.04 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 17 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 18 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 C 0.12 1.32 6.42 -3.49 -0.02 1.30 16 26 C -0.15 -1.58 5.71 -26.39 -0.15 -1.73 16 27 C -0.20 -1.71 9.75 -39.28 -0.38 -2.09 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.22 8.10 -51.93 -0.42 -0.20 16 30 H 0.07 0.27 8.10 -51.93 -0.42 -0.16 16 31 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 32 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.09 0.97 6.98 -51.93 -0.36 0.61 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.35 6.99 -51.93 -0.36 0.99 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.39 6.39 5.96 -40.82 -0.24 6.15 16 39 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.97 5.64 -51.93 -0.29 0.68 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -33.92 392.68 -10.09 -44.01 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.56 Total: 2.54 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -3.06 Total: 2.22 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.26 Total: -54.67 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.10 Total: -16.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.92 -10.09 -44.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273561183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.700 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds