Wall clock time and date at job start Tue Mar 31 2020 17:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38824 * 120.75610 * 2 1 4 4 C 1.38051 * 119.28717 * 180.02562 * 3 2 1 5 5 N 1.31970 * 120.83341 * 359.73615 * 4 3 2 6 6 C 1.32241 * 121.64646 * 0.53009 * 5 4 3 7 7 O 1.35673 * 119.68572 * 179.74969 * 6 5 4 8 8 C 1.42901 * 116.99898 * 359.72842 * 7 6 5 9 9 C 1.53041 * 109.46339 * 149.99710 * 8 7 6 10 10 C 1.53189 * 109.31621 * 181.37282 * 9 8 7 11 11 N 1.46933 * 108.77196 * 305.36698 * 10 9 8 12 12 C 1.34779 * 120.62793 * 233.58162 * 11 10 9 13 13 O 1.21586 * 119.99900 * 5.22563 * 12 11 10 14 14 N 1.34778 * 119.99935 * 185.21977 * 12 11 10 15 15 C 1.46502 * 119.99582 * 175.01517 * 14 12 11 16 16 C 1.53000 * 109.46534 * 180.02562 * 15 14 12 17 17 C 1.50704 * 109.46817 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00260 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99579 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00586 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99736 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46761 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47156 * 119.99559 * 21 19 17 24 24 H 1.48491 * 109.47172 * 239.99879 * 21 19 17 25 25 C 1.46924 * 118.73982 * 53.85715 * 11 10 9 26 26 C 1.53042 * 109.44933 * 270.05998 * 8 7 6 27 27 C 1.38377 * 120.75581 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47553 * 269.98213 * 1 2 3 29 29 H 1.09005 * 109.47013 * 29.98593 * 1 2 3 30 30 H 1.08998 * 109.47048 * 149.97843 * 1 2 3 31 31 H 1.07996 * 120.35722 * 0.03324 * 3 2 1 32 32 H 1.07998 * 119.58328 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.46059 * 30.02479 * 8 7 6 34 34 H 1.09006 * 109.49766 * 61.41850 * 9 8 7 35 35 H 1.09004 * 109.52237 * 301.33944 * 9 8 7 36 36 H 1.08993 * 109.58861 * 185.58030 * 10 9 8 37 37 H 1.08997 * 109.70246 * 65.21948 * 10 9 8 38 38 H 0.96998 * 119.99957 * 355.01868 * 14 12 11 39 39 H 1.08999 * 109.46950 * 60.00577 * 15 14 12 40 40 H 1.08994 * 109.47292 * 299.99762 * 15 14 12 41 41 H 1.09003 * 109.47469 * 300.00278 * 16 15 14 42 42 H 1.08999 * 109.47112 * 60.00577 * 16 15 14 43 43 H 0.96999 * 120.00270 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.58342 * 65.93187 * 25 11 10 45 45 H 1.09000 * 109.58624 * 186.35188 * 25 11 10 46 46 H 1.08997 * 109.49669 * 298.57260 * 26 8 7 47 47 H 1.08996 * 109.49534 * 58.66512 * 26 8 7 48 48 H 1.08001 * 120.44334 * 359.96450 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1930 0.0000 4 6 3.5970 1.1576 -0.0005 5 7 4.2442 0.0075 0.0042 6 6 3.6033 -1.1493 -0.0009 7 8 4.3087 -2.3082 -0.0009 8 6 5.7336 -2.2004 -0.0013 9 6 6.3366 -3.4078 0.7202 10 6 7.8622 -3.2717 0.7478 11 7 8.3454 -3.0873 -0.6275 12 6 9.3027 -3.8906 -1.1324 13 8 9.7073 -4.8361 -0.4839 14 7 9.8114 -3.6457 -2.3562 15 6 10.9266 -4.4510 -2.8603 16 6 11.3100 -3.9705 -4.2614 17 6 12.4576 -4.7984 -4.7799 18 1 12.8717 -5.5884 -4.1711 19 6 12.9787 -4.5471 -6.0314 20 7 12.4741 -3.5853 -6.7730 21 14 14.4008 -5.5738 -6.6743 22 1 14.7822 -6.5843 -5.6551 23 1 13.9892 -6.2617 -7.9243 24 1 15.5617 -4.6912 -6.9542 25 6 7.7696 -2.0069 -1.4397 26 6 6.2412 -2.1607 -1.4446 27 6 2.2147 -1.1892 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6952 2.1386 0.0005 32 1 4.1541 2.0828 -0.0001 33 1 6.0288 -1.2856 0.5127 34 1 6.0623 -4.3213 0.1925 35 1 5.9566 -3.4493 1.7410 36 1 8.3020 -4.1744 1.1717 37 1 8.1433 -2.4095 1.3525 38 1 9.4392 -2.9364 -2.9031 39 1 10.6279 -5.4983 -2.9041 40 1 11.7822 -4.3447 -2.1935 41 1 10.4545 -4.0764 -4.9286 42 1 11.6089 -2.9232 -4.2173 43 1 12.8405 -3.4088 -7.6536 44 1 8.0413 -1.0425 -1.0103 45 1 8.1484 -2.0748 -2.4595 46 1 5.9678 -3.0858 -1.9519 47 1 5.7931 -1.3140 -1.9646 48 1 1.6943 -2.1356 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273561183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:13 Heat of formation + Delta-G solvation = -60.235098 kcal Electronic energy + Delta-G solvation = -27862.785580 eV Core-core repulsion = 23916.864429 eV Total energy + Delta-G solvation = -3945.921151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84947 -41.29998 -39.57386 -37.75799 -36.61730 -34.91829 -34.73541 -33.46419 -32.26862 -31.38452 -30.86762 -28.78476 -27.04777 -25.81374 -24.60455 -24.21966 -23.27776 -22.78343 -21.86806 -20.69474 -19.36260 -18.93522 -18.49895 -17.78137 -17.24093 -16.86066 -16.80108 -16.58143 -16.48297 -15.71238 -15.56639 -15.46832 -15.34165 -14.97618 -14.93081 -14.61542 -14.29002 -14.09348 -13.97183 -13.62415 -13.47371 -13.32633 -13.14982 -13.00611 -12.95151 -12.85971 -12.55096 -12.51596 -12.36574 -12.25513 -11.70461 -11.67414 -11.58768 -11.40403 -11.13062 -10.61247 -10.55079 -10.46464 -10.20654 -9.56842 -9.45277 -8.24149 -6.34375 0.22544 0.31949 1.41319 1.41932 1.54817 1.61707 1.93452 2.13907 2.40733 2.81664 2.93897 3.10647 3.34953 3.60989 3.66427 3.84252 3.91935 3.97668 4.07304 4.20853 4.23084 4.23864 4.32351 4.42582 4.50269 4.53707 4.59736 4.69967 4.71672 4.75709 4.80432 4.82237 4.85824 4.86229 4.96963 4.99042 5.12474 5.21250 5.29466 5.42743 5.46390 5.52913 5.58250 5.61717 5.77752 5.88531 6.16766 6.30629 6.78663 6.92412 6.93482 7.34872 7.51582 8.88027 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020640 B = 0.001912 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.263547 B =14637.396676 C =15482.779353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.012 4.012 3 C -0.212 4.212 4 C 0.131 3.869 5 N -0.563 5.563 6 C 0.303 3.697 7 O -0.314 6.314 8 C 0.099 3.901 9 C -0.122 4.122 10 C 0.134 3.866 11 N -0.629 5.629 12 C 0.701 3.299 13 O -0.635 6.635 14 N -0.735 5.735 15 C 0.159 3.841 16 C 0.024 3.976 17 C -0.545 4.545 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.966 3.034 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.276 1.276 25 C 0.116 3.884 26 C -0.139 4.139 27 C -0.211 4.211 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.183 0.817 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.404 0.596 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.007 0.993 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.084 0.916 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.223 13.220 16.191 33.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.019 4.019 3 C -0.232 4.232 4 C -0.024 4.024 5 N -0.287 5.287 6 C 0.125 3.875 7 O -0.222 6.222 8 C 0.043 3.957 9 C -0.161 4.161 10 C 0.011 3.989 11 N -0.367 5.367 12 C 0.403 3.597 13 O -0.517 6.517 14 N -0.392 5.392 15 C 0.035 3.965 16 C -0.014 4.014 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.201 1.201 25 C -0.006 4.006 26 C -0.178 4.178 27 C -0.231 4.231 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.182 0.818 32 H 0.200 0.800 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.241 0.759 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.025 0.975 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.102 0.898 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.064 12.329 16.496 32.439 hybrid contribution -0.023 -0.217 -0.990 1.013 sum -25.087 12.112 15.506 31.883 Atomic orbital electron populations 1.20917 0.87728 1.04509 1.04027 1.20531 0.98273 0.91621 0.91505 1.22237 0.95155 0.99777 1.06048 1.22934 0.92713 0.94891 0.91835 1.67268 1.42166 0.98812 1.20461 1.20076 0.89619 0.85224 0.92558 1.86278 1.21216 1.27195 1.87496 1.22263 0.76706 1.00288 0.96422 1.21972 0.94477 0.97354 1.02272 1.21503 0.92402 1.03769 0.81187 1.47380 1.39954 1.33812 1.15520 1.16054 0.79951 0.82089 0.81630 1.90841 1.66063 1.32789 1.61999 1.45440 1.37520 1.39548 1.16672 1.21101 0.86462 0.93486 0.95437 1.19133 0.95812 0.96205 0.90222 1.21486 1.17222 1.17885 1.01788 0.92254 1.25877 0.99886 0.96475 0.96963 1.70062 1.43205 1.32017 1.11304 0.85377 0.78644 0.78653 0.78249 1.18971 1.20255 1.20146 1.21806 0.92212 0.90552 0.96057 1.22312 0.95385 1.03016 0.97081 1.21169 0.91005 1.00870 1.10105 0.89160 0.89240 0.90501 0.81826 0.80050 0.88666 0.91870 0.88152 0.89633 0.89132 0.75857 0.93919 0.93598 0.97472 0.97201 0.92540 0.88716 0.89663 0.92064 0.89791 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.06 71.24 0.72 0.07 16 2 C -0.01 -0.14 5.91 -19.69 -0.12 -0.26 16 3 C -0.21 -2.22 9.81 22.37 0.22 -2.00 16 4 C 0.13 1.76 11.18 84.63 0.95 2.71 16 5 N -0.56 -10.81 8.64 -308.96 -2.67 -13.48 16 6 C 0.30 6.25 7.45 84.79 0.63 6.88 16 7 O -0.31 -7.02 9.76 -89.90 -0.88 -7.90 16 8 C 0.10 2.01 2.34 30.62 0.07 2.08 16 9 C -0.12 -2.43 5.73 30.67 0.18 -2.26 16 10 C 0.13 3.05 6.44 86.36 0.56 3.60 16 11 N -0.63 -17.26 2.97 -836.08 -2.48 -19.74 16 12 C 0.70 26.00 8.30 179.05 1.49 27.49 16 13 O -0.63 -28.48 15.77 -3.99 -0.06 -28.55 16 14 N -0.74 -27.64 5.47 -478.54 -2.62 -30.25 16 15 C 0.16 7.19 5.62 86.38 0.49 7.68 16 16 C 0.02 1.23 5.09 29.85 0.15 1.38 16 17 C -0.55 -30.98 9.11 25.60 0.23 -30.75 16 18 H 0.06 3.31 7.74 -2.92 -0.02 3.28 16 19 C 0.01 0.38 5.46 84.66 0.46 0.84 16 20 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 21 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.12 2.50 6.42 86.51 0.56 3.05 16 26 C -0.14 -2.90 5.71 30.82 0.18 -2.73 16 27 C -0.21 -3.50 9.75 22.47 0.22 -3.28 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.09 0.25 8.10 -2.38 -0.02 0.23 16 30 H 0.08 0.40 8.10 -2.39 -0.02 0.38 16 31 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 33 H 0.10 1.88 6.98 -2.38 -0.02 1.86 16 34 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.09 2.28 6.99 -2.39 -0.02 2.26 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.40 13.21 5.96 -92.71 -0.55 12.66 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.09 1.85 5.64 -2.39 -0.01 1.84 16 46 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 47 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -73.55 392.68 0.98 -72.57 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.41 Total: 21.12 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 6.97 Total: 14.52 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -7.48 Total: -117.90 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.94 Total: -36.45 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -73.55 0.98 -72.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273561183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.334 kcal (2) G-P(sol) polarization free energy of solvation -73.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds