Wall clock time and date at job start Tue Mar 31 2020 18:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40195 * 120.36674 * 2 1 4 4 C 1.35353 * 119.94607 * 179.97438 * 3 2 1 5 5 N 1.35758 * 120.70442 * 0.25378 * 4 3 2 6 6 C 1.46497 * 119.62616 * 179.72669 * 5 4 3 7 7 C 1.50703 * 109.47369 * 89.99899 * 6 5 4 8 8 O 1.21277 * 119.99798 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00201 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47558 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.49628 * 54.93263 * 11 10 9 13 13 C 1.53035 * 109.49727 * 174.99727 * 11 10 9 14 14 C 1.53039 * 109.53467 * 181.31387 * 13 11 10 15 15 C 1.53188 * 109.31751 * 298.63829 * 14 13 11 16 16 N 1.46926 * 108.77617 * 54.63138 * 15 14 13 17 17 C 1.36936 * 120.62808 * 126.37077 * 16 15 14 18 18 H 1.08002 * 120.00081 * 207.68458 * 17 16 15 19 19 C 1.38810 * 120.00070 * 27.68691 * 17 16 15 20 20 N 1.31617 * 120.00194 * 17.37037 * 19 17 16 21 21 Si 1.86803 * 120.00134 * 197.36813 * 19 17 16 22 22 H 1.48502 * 109.46786 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47179 * 119.99838 * 21 19 17 24 24 H 1.48498 * 109.47402 * 239.99995 * 21 19 17 25 25 C 1.46920 * 118.74101 * 306.39686 * 16 15 14 26 26 C 1.34661 * 120.74771 * 359.48777 * 5 4 3 27 27 O 1.22064 * 119.98246 * 180.24049 * 26 5 4 28 28 C 1.36401 * 120.37003 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47373 * 89.99958 * 1 2 3 30 30 H 1.08997 * 109.47227 * 209.99532 * 1 2 3 31 31 H 1.08995 * 109.47312 * 329.99320 * 1 2 3 32 32 H 1.07999 * 120.02744 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.64407 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47184 * 210.00582 * 6 5 4 35 35 H 1.09008 * 109.46967 * 330.00036 * 6 5 4 36 36 H 0.97004 * 119.99444 * 0.02562 * 9 7 6 37 37 H 1.09005 * 109.46434 * 300.00281 * 10 9 7 38 38 H 1.09000 * 109.46713 * 59.99461 * 10 9 7 39 39 H 1.08995 * 109.46477 * 301.33407 * 13 11 10 40 40 H 1.09003 * 109.46142 * 61.31139 * 13 11 10 41 41 H 1.09009 * 109.49560 * 58.58985 * 14 13 11 42 42 H 1.08999 * 109.49946 * 178.68521 * 14 13 11 43 43 H 1.08994 * 109.59206 * 174.42124 * 15 14 13 44 44 H 1.09006 * 109.58596 * 294.84587 * 15 14 13 45 45 H 0.96996 * 120.00197 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.58563 * 293.82184 * 25 16 15 47 47 H 1.09001 * 109.59068 * 173.39126 * 25 16 15 48 48 H 1.08009 * 120.34437 * 0.04454 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0274 -0.0041 6 6 5.7186 0.0442 -0.0095 7 6 6.2263 0.0474 1.4094 8 8 5.4416 0.0363 2.3341 9 7 7.5522 0.0617 1.6508 10 6 8.0457 0.0643 3.0301 11 6 9.5756 0.0820 3.0245 12 1 9.9274 0.9284 2.4348 13 6 10.0902 0.2105 4.4600 14 6 11.6197 0.2613 4.4527 15 6 12.1671 -1.0398 3.8575 16 7 11.5638 -1.2447 2.5336 17 6 12.3512 -1.4532 1.4328 18 1 11.9972 -1.1667 0.4535 19 6 13.6043 -2.0328 1.5756 20 7 13.9052 -2.6871 2.6773 21 14 14.8639 -1.8844 0.2041 22 1 14.2833 -1.1052 -0.9189 23 1 16.0727 -1.1896 0.7152 24 1 15.2371 -3.2398 -0.2742 25 6 10.0997 -1.2212 2.4130 26 6 3.6016 -1.1508 0.0010 27 8 4.2312 -2.1965 0.0012 28 6 2.1966 -1.1768 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6821 2.1486 0.0004 33 1 4.1102 2.1344 0.0001 34 1 6.0903 -0.8406 -0.5264 35 1 6.0698 0.9393 -0.5231 36 1 8.1797 0.0703 0.9111 37 1 7.6743 0.9492 3.5471 38 1 7.6941 -0.8307 3.5434 39 1 9.6987 1.1249 4.9057 40 1 9.7584 -0.6486 5.0430 41 1 11.9528 1.1058 3.8493 42 1 11.9848 0.3763 5.4733 43 1 13.2502 -0.9691 3.7585 44 1 11.9114 -1.8756 4.5089 45 1 14.7807 -3.0925 2.7769 46 1 9.6754 -2.0717 2.9467 47 1 9.8188 -1.2701 1.3610 48 1 1.6682 -2.1189 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278248311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:12 Heat of formation + Delta-G solvation = -24.487694 kcal Electronic energy + Delta-G solvation = -28412.471735 eV Core-core repulsion = 24468.100708 eV Total energy + Delta-G solvation = -3944.371027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67683 -39.57477 -37.83689 -37.18576 -35.53865 -34.85265 -33.07495 -31.11303 -30.47720 -30.29738 -29.56052 -27.39730 -25.37251 -25.00103 -23.93754 -22.23115 -21.90524 -21.03538 -20.61987 -19.14365 -17.85645 -17.74227 -17.52643 -16.67161 -16.24250 -15.70540 -15.51492 -15.30979 -14.83930 -14.48335 -14.39343 -14.28227 -13.92406 -13.74111 -13.49948 -13.45589 -13.07710 -12.83369 -12.71591 -12.47855 -12.37893 -12.21341 -12.09110 -11.99568 -11.87667 -11.33298 -11.05139 -10.75946 -10.52609 -10.43532 -10.24680 -10.20992 -10.10793 -9.96479 -9.81113 -9.57091 -9.45680 -9.04851 -8.49741 -8.17105 -6.70935 -5.81877 -3.24607 0.59802 1.68524 2.25502 2.46491 3.11225 3.34308 3.42040 3.43872 3.54014 4.21894 4.32986 4.44773 4.45374 4.57378 4.72573 4.84806 4.95796 5.05007 5.09907 5.19239 5.25345 5.27734 5.39163 5.42208 5.49423 5.58113 5.69764 5.78485 5.82104 5.89187 5.95317 6.12564 6.19156 6.26968 6.28462 6.33216 6.40925 6.55500 6.66305 6.73333 6.82124 6.85889 6.92950 7.36842 7.40872 7.64639 7.75735 7.89375 8.08807 8.41183 9.17586 9.81173 10.37877 11.26470 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019514 B = 0.002272 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.496602 B =12323.513067 C =13114.523960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 C -0.232 4.232 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.068 3.932 7 C 0.499 3.501 8 O -0.534 6.534 9 N -0.717 5.717 10 C 0.128 3.872 11 C -0.117 4.117 12 H 0.074 0.926 13 C -0.100 4.100 14 C -0.141 4.141 15 C 0.168 3.832 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.153 3.847 26 C 0.521 3.479 27 O -0.548 6.548 28 C -0.247 4.247 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.160 0.840 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.405 0.595 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.253 0.747 46 H 0.019 0.981 47 H 0.050 0.950 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.174 12.278 -5.290 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.255 4.255 4 C 0.019 3.981 5 N -0.192 5.192 6 C -0.057 4.057 7 C 0.283 3.717 8 O -0.410 6.410 9 N -0.369 5.369 10 C 0.005 3.995 11 C -0.137 4.137 12 H 0.092 0.908 13 C -0.138 4.138 14 C -0.180 4.180 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.026 3.974 26 C 0.323 3.677 27 O -0.429 6.429 28 C -0.269 4.269 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.240 0.760 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.069 0.931 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.122 11.469 -4.589 25.337 hybrid contribution 1.080 0.108 -0.885 1.401 sum -21.042 11.577 -5.475 24.632 Atomic orbital electron populations 1.20919 0.90406 1.03560 1.03006 1.20193 0.96734 0.92676 0.89398 1.20499 0.92333 0.98882 1.13781 1.21878 0.93613 0.89495 0.93127 1.45048 1.07202 1.07292 1.59631 1.21833 0.79675 1.07549 0.96659 1.20609 0.83078 0.76984 0.90997 1.90740 1.55586 1.49218 1.45466 1.45981 1.06278 1.74427 1.10218 1.21500 0.94675 1.01870 0.81503 1.21956 0.91423 1.01818 0.98549 0.90810 1.21342 0.97085 1.00425 0.94948 1.22169 0.94433 1.01785 0.99662 1.20808 0.99248 0.90780 0.84901 1.44050 0.99065 1.82949 1.05311 1.19188 0.97726 1.33864 0.87527 0.91676 1.25048 0.99899 0.97358 0.97386 1.70048 1.21340 1.35855 1.27251 0.86238 0.81670 0.77384 0.81544 1.20283 1.21566 1.21716 1.20908 0.86255 0.92553 0.97692 1.17102 0.89369 0.82474 0.78737 1.90985 1.69080 1.30223 1.52661 1.21923 0.92253 0.99575 1.13111 0.90156 0.90826 0.90796 0.83790 0.82219 0.85019 0.85993 0.75980 0.91890 0.91470 0.93452 0.92451 0.92746 0.93153 0.89491 0.96442 0.93643 0.96288 0.93119 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.03 36.00 0.36 -0.28 16 2 C 0.01 0.11 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.66 9.71 -39.88 -0.39 -2.05 16 4 C 0.15 1.14 10.28 -16.84 -0.17 0.97 16 5 N -0.48 -5.35 2.07 -121.06 -0.25 -5.60 16 6 C 0.07 0.67 5.81 -5.19 -0.03 0.64 16 7 C 0.50 6.64 7.89 -10.98 -0.09 6.55 16 8 O -0.53 -9.27 16.43 5.56 0.09 -9.18 16 9 N -0.72 -8.96 5.33 -60.29 -0.32 -9.28 16 10 C 0.13 1.82 5.07 -4.04 -0.02 1.80 16 11 C -0.12 -1.86 2.37 -90.50 -0.21 -2.07 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.10 -1.61 5.17 -26.69 -0.14 -1.75 16 14 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 15 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 16 N -0.59 -14.38 2.99 -172.32 -0.52 -14.89 16 17 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 18 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 19 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 20 N -0.90 -25.97 11.19 55.49 0.62 -25.35 16 21 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.15 3.04 5.60 -3.71 -0.02 3.02 16 26 C 0.52 7.43 7.40 -15.45 -0.11 7.32 16 27 O -0.55 -10.01 16.64 4.86 0.08 -9.93 16 28 C -0.25 -2.82 9.65 -39.38 -0.38 -3.20 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.16 0.68 8.04 -52.49 -0.42 0.26 16 34 H 0.13 1.35 7.39 -51.93 -0.38 0.97 16 35 H 0.12 0.62 8.01 -51.92 -0.42 0.20 16 36 H 0.41 4.30 7.71 -40.82 -0.31 3.98 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 2.29 6.03 -51.93 -0.31 1.98 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.96 7.14 -51.93 -0.37 0.59 16 48 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -36.41 390.58 -9.35 -45.77 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.68 Total: 1.61 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -2.23 Total: 4.66 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.47 Total: -55.12 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.17 Total: -19.11 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.41 -9.35 -45.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278248311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.278 kcal (2) G-P(sol) polarization free energy of solvation -36.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds