Wall clock time and date at job start Tue Mar 31 2020 18:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40195 * 120.36674 * 2 1 4 4 C 1.35353 * 119.94607 * 179.97438 * 3 2 1 5 5 N 1.35758 * 120.70442 * 0.25378 * 4 3 2 6 6 C 1.46497 * 119.62616 * 179.72669 * 5 4 3 7 7 C 1.50703 * 109.47369 * 89.99899 * 6 5 4 8 8 O 1.21277 * 119.99798 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00201 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47558 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.49628 * 54.93263 * 11 10 9 13 13 C 1.53035 * 109.49727 * 174.99727 * 11 10 9 14 14 C 1.53039 * 109.53467 * 181.31387 * 13 11 10 15 15 C 1.53188 * 109.31751 * 298.63829 * 14 13 11 16 16 N 1.46926 * 108.77617 * 54.63138 * 15 14 13 17 17 C 1.36936 * 120.62808 * 126.37077 * 16 15 14 18 18 H 1.08002 * 120.00081 * 207.68458 * 17 16 15 19 19 C 1.38810 * 120.00070 * 27.68691 * 17 16 15 20 20 N 1.31617 * 120.00194 * 17.37037 * 19 17 16 21 21 Si 1.86803 * 120.00134 * 197.36813 * 19 17 16 22 22 H 1.48502 * 109.46786 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47179 * 119.99838 * 21 19 17 24 24 H 1.48498 * 109.47402 * 239.99995 * 21 19 17 25 25 C 1.46920 * 118.74101 * 306.39686 * 16 15 14 26 26 C 1.34661 * 120.74771 * 359.48777 * 5 4 3 27 27 O 1.22064 * 119.98246 * 180.24049 * 26 5 4 28 28 C 1.36401 * 120.37003 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47373 * 89.99958 * 1 2 3 30 30 H 1.08997 * 109.47227 * 209.99532 * 1 2 3 31 31 H 1.08995 * 109.47312 * 329.99320 * 1 2 3 32 32 H 1.07999 * 120.02744 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.64407 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47184 * 210.00582 * 6 5 4 35 35 H 1.09008 * 109.46967 * 330.00036 * 6 5 4 36 36 H 0.97004 * 119.99444 * 0.02562 * 9 7 6 37 37 H 1.09005 * 109.46434 * 300.00281 * 10 9 7 38 38 H 1.09000 * 109.46713 * 59.99461 * 10 9 7 39 39 H 1.08995 * 109.46477 * 301.33407 * 13 11 10 40 40 H 1.09003 * 109.46142 * 61.31139 * 13 11 10 41 41 H 1.09009 * 109.49560 * 58.58985 * 14 13 11 42 42 H 1.08999 * 109.49946 * 178.68521 * 14 13 11 43 43 H 1.08994 * 109.59206 * 174.42124 * 15 14 13 44 44 H 1.09006 * 109.58596 * 294.84587 * 15 14 13 45 45 H 0.96996 * 120.00197 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.58563 * 293.82184 * 25 16 15 47 47 H 1.09001 * 109.59068 * 173.39126 * 25 16 15 48 48 H 1.08009 * 120.34437 * 0.04454 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0274 -0.0041 6 6 5.7186 0.0442 -0.0095 7 6 6.2263 0.0474 1.4094 8 8 5.4416 0.0363 2.3341 9 7 7.5522 0.0617 1.6508 10 6 8.0457 0.0643 3.0301 11 6 9.5756 0.0820 3.0245 12 1 9.9274 0.9284 2.4348 13 6 10.0902 0.2105 4.4600 14 6 11.6197 0.2613 4.4527 15 6 12.1671 -1.0398 3.8575 16 7 11.5638 -1.2447 2.5336 17 6 12.3512 -1.4532 1.4328 18 1 11.9972 -1.1667 0.4535 19 6 13.6043 -2.0328 1.5756 20 7 13.9052 -2.6871 2.6773 21 14 14.8639 -1.8844 0.2041 22 1 14.2833 -1.1052 -0.9189 23 1 16.0727 -1.1896 0.7152 24 1 15.2371 -3.2398 -0.2742 25 6 10.0997 -1.2212 2.4130 26 6 3.6016 -1.1508 0.0010 27 8 4.2312 -2.1965 0.0012 28 6 2.1966 -1.1768 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6821 2.1486 0.0004 33 1 4.1102 2.1344 0.0001 34 1 6.0903 -0.8406 -0.5264 35 1 6.0698 0.9393 -0.5231 36 1 8.1797 0.0703 0.9111 37 1 7.6743 0.9492 3.5471 38 1 7.6941 -0.8307 3.5434 39 1 9.6987 1.1249 4.9057 40 1 9.7584 -0.6486 5.0430 41 1 11.9528 1.1058 3.8493 42 1 11.9848 0.3763 5.4733 43 1 13.2502 -0.9691 3.7585 44 1 11.9114 -1.8756 4.5089 45 1 14.7807 -3.0925 2.7769 46 1 9.6754 -2.0717 2.9467 47 1 9.8188 -1.2701 1.3610 48 1 1.6682 -2.1189 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278248311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:11 Heat of formation + Delta-G solvation = -48.899483 kcal Electronic energy + Delta-G solvation = -28413.530309 eV Core-core repulsion = 24468.100708 eV Total energy + Delta-G solvation = -3945.429602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.51614 -40.67926 -39.34580 -38.10753 -36.47358 -36.09034 -34.72204 -32.35643 -32.24790 -31.24094 -30.40735 -28.24747 -27.25434 -26.26088 -24.64736 -23.85848 -22.91729 -22.38776 -21.69359 -20.66024 -18.89049 -18.54407 -18.49892 -18.39823 -17.03702 -16.88387 -16.74525 -16.58679 -16.25832 -15.82404 -15.50261 -15.16157 -15.07453 -15.03281 -14.76299 -14.52558 -14.15493 -14.03596 -13.91977 -13.76733 -13.49387 -13.29978 -13.02920 -12.97266 -12.90891 -12.86102 -12.53730 -12.45703 -12.24844 -11.95509 -11.84135 -11.60301 -11.45312 -11.21468 -11.11098 -11.07693 -10.57230 -10.54944 -10.16716 -8.98289 -8.69657 -7.87483 -5.33259 -0.11131 0.92591 1.42655 1.46343 1.47978 1.48823 1.58377 2.17521 2.50688 2.70733 3.27404 3.55609 3.60014 3.68523 3.75355 3.88802 3.97013 3.98675 4.04177 4.09731 4.18800 4.34867 4.38878 4.41463 4.55547 4.59054 4.73215 4.79770 4.84182 4.85442 4.87552 4.90785 4.99119 5.09162 5.11357 5.20231 5.25204 5.31383 5.35123 5.44011 5.49717 5.56284 5.66229 5.67574 5.77363 6.06369 6.37490 6.41394 6.97224 7.08524 7.13977 7.85208 8.37415 9.19118 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019514 B = 0.002272 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.496602 B =12323.513067 C =13114.523960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.034 3.966 3 C -0.231 4.231 4 C 0.141 3.859 5 N -0.483 5.483 6 C 0.070 3.930 7 C 0.499 3.501 8 O -0.578 6.578 9 N -0.710 5.710 10 C 0.139 3.861 11 C -0.097 4.097 12 H 0.086 0.914 13 C -0.098 4.098 14 C -0.129 4.129 15 C 0.171 3.829 16 N -0.609 5.609 17 C -0.258 4.258 18 H 0.074 0.926 19 C -0.056 4.056 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.261 1.261 23 H -0.291 1.291 24 H -0.297 1.297 25 C 0.150 3.850 26 C 0.500 3.500 27 O -0.614 6.614 28 C -0.294 4.294 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.185 0.815 33 H 0.205 0.795 34 H 0.123 0.877 35 H 0.180 0.820 36 H 0.416 0.584 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.053 0.947 44 H -0.012 1.012 45 H 0.248 0.752 46 H -0.003 1.003 47 H 0.058 0.942 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.939 16.482 -6.548 29.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 C -0.253 4.253 4 C 0.015 3.985 5 N -0.192 5.192 6 C -0.055 4.055 7 C 0.285 3.715 8 O -0.458 6.458 9 N -0.363 5.363 10 C 0.015 3.985 11 C -0.117 4.117 12 H 0.104 0.896 13 C -0.136 4.136 14 C -0.168 4.168 15 C 0.046 3.954 16 N -0.332 5.332 17 C -0.388 4.388 18 H 0.091 0.909 19 C -0.251 4.251 20 N -0.585 5.585 21 Si 0.796 3.204 22 H -0.185 1.185 23 H -0.218 1.218 24 H -0.224 1.224 25 C 0.024 3.976 26 C 0.305 3.695 27 O -0.502 6.502 28 C -0.316 4.316 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.202 0.798 33 H 0.222 0.778 34 H 0.141 0.859 35 H 0.197 0.803 36 H 0.253 0.747 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.006 0.994 45 H 0.057 0.943 46 H 0.015 0.985 47 H 0.077 0.923 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.916 15.738 -5.876 29.227 hybrid contribution 1.520 -1.145 -0.479 1.962 sum -22.396 14.594 -6.355 27.476 Atomic orbital electron populations 1.21038 0.87956 1.04557 1.04362 1.20652 0.98538 0.92078 0.85731 1.21074 0.92423 0.99768 1.11998 1.22740 0.94444 0.89654 0.91689 1.45089 1.07857 1.07531 1.58702 1.22032 0.79152 1.09864 0.94439 1.21180 0.82684 0.75637 0.92016 1.90719 1.56603 1.51299 1.47159 1.45903 1.06524 1.73911 1.09923 1.21268 0.93147 1.01585 0.82534 1.21702 0.92347 0.99386 0.98308 0.89559 1.21348 0.95200 1.01928 0.95149 1.21987 0.96080 0.98468 1.00233 1.20649 0.97550 0.92554 0.84669 1.44332 1.00749 1.83128 1.04984 1.19596 0.98068 1.32606 0.88560 0.90866 1.25852 1.01932 0.97660 0.99697 1.70215 1.21411 1.37448 1.29399 0.85200 0.79045 0.76891 0.79271 1.18482 1.21782 1.22440 1.21048 0.83925 0.94190 0.98432 1.17563 0.90389 0.82730 0.78774 1.90922 1.70295 1.32433 1.56592 1.21881 0.91490 1.00862 1.17348 0.88375 0.91060 0.88581 0.79801 0.77790 0.85945 0.80278 0.74693 0.90275 0.93662 0.89801 0.93241 0.92355 0.91320 0.92894 0.99391 0.94252 0.98466 0.92309 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.03 71.23 0.71 -0.24 16 2 C 0.03 0.51 5.89 -19.82 -0.12 0.39 16 3 C -0.23 -2.42 9.71 22.08 0.21 -2.21 16 4 C 0.14 1.70 10.28 83.42 0.86 2.55 16 5 N -0.48 -10.11 2.07 -655.06 -1.36 -11.47 16 6 C 0.07 1.24 5.81 85.63 0.50 1.74 16 7 C 0.50 12.58 7.89 87.66 0.69 13.27 16 8 O -0.58 -19.75 16.43 -3.02 -0.05 -19.80 16 9 N -0.71 -16.44 5.33 -463.06 -2.47 -18.90 16 10 C 0.14 3.71 5.07 86.38 0.44 4.14 16 11 C -0.10 -2.90 2.37 -10.72 -0.03 -2.92 16 12 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 13 C -0.10 -2.96 5.17 30.62 0.16 -2.80 16 14 C -0.13 -4.59 6.08 30.67 0.19 -4.41 16 15 C 0.17 8.26 5.31 86.36 0.46 8.72 16 16 N -0.61 -29.96 2.99 -699.11 -2.09 -32.05 16 17 C -0.26 -13.85 9.58 84.03 0.81 -13.04 16 18 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 19 C -0.06 -3.14 4.91 84.86 0.42 -2.72 16 20 N -0.94 -56.09 11.19 21.65 0.24 -55.84 16 21 Si 0.97 44.38 29.59 68.60 2.03 46.41 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 25 C 0.15 5.96 5.60 86.36 0.48 6.44 16 26 C 0.50 14.89 7.40 84.82 0.63 15.52 16 27 O -0.61 -24.34 16.64 -5.52 -0.09 -24.44 16 28 C -0.29 -7.01 9.65 22.40 0.22 -6.79 16 29 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 31 H 0.10 0.37 8.10 -2.39 -0.02 0.35 16 32 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.21 0.54 8.04 -2.91 -0.02 0.52 16 34 H 0.12 2.48 7.39 -2.39 -0.02 2.46 16 35 H 0.18 0.99 8.01 -2.38 -0.02 0.97 16 36 H 0.42 7.84 7.71 -92.71 -0.71 7.12 16 37 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 2.90 6.03 -2.39 -0.01 2.88 16 44 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 45 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16 46 H 0.00 -0.12 8.14 -2.38 -0.02 -0.13 16 47 H 0.06 2.19 7.14 -2.39 -0.02 2.18 16 48 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -86.40 390.58 3.08 -83.33 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.24 Total: 15.12 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 6.62 Total: 17.64 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -5.68 Total: -118.27 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.14 Total: -44.23 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -86.40 3.08 -83.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278248311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.427 kcal (2) G-P(sol) polarization free energy of solvation -86.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds