Wall clock time and date at job start Tue Mar 31 2020 18:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32299 * 120.40995 * 2 1 4 4 C 1.32321 * 120.75753 * 180.02562 * 3 2 1 5 5 O 1.35457 * 119.19524 * 179.97438 * 4 3 2 6 6 N 1.32322 * 121.61227 * 359.95219 * 4 3 2 7 7 C 1.32303 * 120.75523 * 0.02562 * 6 4 3 8 8 C 1.50700 * 120.40771 * 180.02562 * 7 6 4 9 9 C 1.38592 * 119.17723 * 0.02562 * 7 6 4 10 10 C 1.50699 * 120.73769 * 179.72423 * 9 7 6 11 11 C 1.52999 * 109.47161 * 90.00213 * 10 9 7 12 12 C 1.50701 * 109.46790 * 180.02562 * 11 10 9 13 13 O 1.21293 * 120.00100 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99698 * 179.97438 * 12 11 10 15 15 C 1.37102 * 120.00358 * 0.02562 * 14 12 11 16 16 H 1.07999 * 119.99997 * 233.92431 * 15 14 12 17 17 C 1.38950 * 119.99712 * 53.91270 * 15 14 12 18 18 N 1.31410 * 120.00284 * 22.97921 * 17 15 14 19 19 Si 1.86799 * 119.99838 * 202.96489 * 17 15 14 20 20 H 1.48504 * 109.47122 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46806 * 120.00409 * 19 17 15 22 22 H 1.48492 * 109.47604 * 240.00416 * 19 17 15 23 23 C 1.46501 * 120.00120 * 179.97438 * 14 12 11 24 24 C 1.54263 * 110.03463 * 239.37218 * 23 14 12 25 25 C 1.54957 * 104.16437 * 217.13326 * 24 23 14 26 26 C 1.54899 * 102.77309 * 37.88575 * 25 24 23 27 27 C 1.53870 * 110.03784 * 122.15148 * 23 14 12 28 28 H 1.08999 * 109.47156 * 270.00344 * 1 2 3 29 29 H 1.09001 * 109.46893 * 30.00215 * 1 2 3 30 30 H 1.09000 * 109.47079 * 149.99945 * 1 2 3 31 31 H 0.96702 * 113.99510 * 269.97688 * 5 4 3 32 32 H 1.09002 * 109.47229 * 269.97711 * 8 7 6 33 33 H 1.08998 * 109.47390 * 29.98055 * 8 7 6 34 34 H 1.09004 * 109.46806 * 149.98422 * 8 7 6 35 35 H 1.09010 * 109.46626 * 209.99973 * 10 9 7 36 36 H 1.09002 * 109.47135 * 329.99528 * 10 9 7 37 37 H 1.09005 * 109.46781 * 299.99179 * 11 10 9 38 38 H 1.08996 * 109.47282 * 59.99889 * 11 10 9 39 39 H 0.96995 * 120.00453 * 174.68372 * 18 17 15 40 40 H 1.09007 * 110.01383 * 0.75769 * 23 14 12 41 41 H 1.09004 * 110.48617 * 335.78077 * 24 23 14 42 42 H 1.09000 * 110.49157 * 98.42229 * 24 23 14 43 43 H 1.08996 * 110.72524 * 279.57536 * 25 24 23 44 44 H 1.09000 * 110.92980 * 156.28703 * 25 24 23 45 45 H 1.09004 * 110.48321 * 203.40607 * 26 25 24 46 46 H 1.09005 * 110.59839 * 80.82128 * 26 25 24 47 47 H 1.08990 * 110.03750 * 238.57816 * 27 23 14 48 48 H 1.09006 * 110.02933 * 0.02562 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1767 1.1410 0.0000 4 6 3.4999 1.1490 -0.0005 5 8 4.1534 2.3355 -0.0010 6 7 4.2003 0.0264 -0.0001 7 6 3.5938 -1.1495 0.0003 8 6 4.3992 -2.4232 0.0014 9 6 2.2086 -1.1952 -0.0002 10 6 1.4816 -2.5152 -0.0059 11 6 1.2351 -2.9680 1.4346 12 6 0.5086 -4.2884 1.4287 13 8 0.2163 -4.8151 0.3760 14 7 0.1838 -4.8838 2.5933 15 6 0.5137 -4.2883 3.7833 16 1 1.0763 -4.8370 4.5241 17 6 0.1245 -2.9786 4.0361 18 7 -0.8993 -2.4618 3.3944 19 14 1.0563 -1.9525 5.2884 20 1 2.1597 -2.7602 5.8676 21 1 1.6199 -0.7507 4.6226 22 1 0.1306 -1.5307 6.3701 23 6 -0.5230 -6.1671 2.5877 24 6 -1.8702 -6.0317 3.3269 25 6 -2.0300 -7.3799 4.0739 26 6 -0.5832 -7.6922 4.5304 27 6 0.2949 -7.2228 3.3521 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.3431 2.6796 -0.8846 32 1 4.5935 -2.7311 -1.0260 33 1 5.3456 -2.2542 0.5152 34 1 3.8411 -3.2055 0.5157 35 1 0.5268 -2.4018 -0.5196 36 1 2.0859 -3.2607 -0.5229 37 1 2.1899 -3.0814 1.9481 38 1 0.6308 -2.2226 1.9514 39 1 -1.2192 -1.5757 3.6252 40 1 -0.6913 -6.4959 1.5621 41 1 -1.8347 -5.2047 4.0362 42 1 -2.6835 -5.8903 2.6151 43 1 -2.3976 -8.1533 3.3995 44 1 -2.6916 -7.2728 4.9335 45 1 -0.4582 -8.7622 4.6967 46 1 -0.3377 -7.1353 5.4347 47 1 0.5229 -8.0641 2.6979 48 1 1.2175 -6.7802 3.7277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330360822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:36 Heat of formation + Delta-G solvation = -40.970273 kcal Electronic energy + Delta-G solvation = -30055.127517 eV Core-core repulsion = 26110.041752 eV Total energy + Delta-G solvation = -3945.085765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19991 -39.03336 -37.67501 -36.75157 -34.74870 -34.19914 -34.11262 -31.52056 -30.07623 -29.35396 -27.96917 -27.62977 -26.80975 -24.93094 -24.08660 -21.74663 -21.67784 -20.01597 -19.40768 -19.35825 -18.59790 -18.02386 -16.68209 -16.05544 -15.77642 -15.38563 -14.73416 -14.68131 -14.33595 -14.31963 -13.79946 -13.68468 -13.36164 -13.27137 -13.18635 -12.68907 -12.51492 -12.40966 -12.38600 -12.14221 -12.06448 -11.74783 -11.66021 -11.52469 -11.14149 -11.01823 -10.86531 -10.70954 -10.56177 -10.49952 -10.41014 -10.37055 -10.28381 -10.13026 -9.99002 -9.66688 -9.01597 -8.96530 -8.66952 -8.30240 -7.30794 -6.49724 -4.27538 0.95698 1.16617 3.03990 3.14471 3.18150 3.18871 3.72811 3.95879 4.11398 4.23751 4.54485 4.70915 4.77446 5.00310 5.04181 5.31399 5.35681 5.35961 5.49627 5.56251 5.61052 5.73154 5.74038 5.80735 5.94703 6.00425 6.06719 6.13760 6.20332 6.21512 6.26523 6.30053 6.32419 6.38661 6.48515 6.52667 6.53850 6.62410 6.71749 6.80774 6.89939 6.99483 7.06296 7.12312 7.29733 7.41623 7.51179 7.97640 8.16647 8.58762 8.85679 9.55114 9.98645 10.53310 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003839 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.624024 B = 7292.515692 C = 7834.232285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.200 3.800 3 N -0.532 5.532 4 C 0.480 3.520 5 O -0.461 6.461 6 N -0.533 5.533 7 C 0.195 3.805 8 C -0.110 4.110 9 C -0.180 4.180 10 C -0.058 4.058 11 C -0.125 4.125 12 C 0.514 3.486 13 O -0.615 6.615 14 N -0.445 5.445 15 C -0.337 4.337 16 H 0.082 0.918 17 C 0.058 3.942 18 N -0.849 5.849 19 Si 0.892 3.108 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.279 1.279 23 C 0.132 3.868 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.116 4.116 27 C -0.127 4.127 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.405 0.595 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.270 0.730 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 0.277 -4.203 5.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.055 3.945 3 N -0.258 5.258 4 C 0.175 3.825 5 O -0.263 6.263 6 N -0.259 5.259 7 C 0.050 3.950 8 C -0.167 4.167 9 C -0.185 4.185 10 C -0.097 4.097 11 C -0.164 4.164 12 C 0.304 3.696 13 O -0.501 6.501 14 N -0.164 5.164 15 C -0.465 4.465 16 H 0.100 0.900 17 C -0.149 4.149 18 N -0.484 5.484 19 Si 0.718 3.282 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.205 1.205 23 C 0.028 3.972 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.165 4.165 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.262 0.738 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.077 1.125 -4.151 5.926 hybrid contribution 0.039 0.317 0.471 0.569 sum 4.116 1.442 -3.680 5.706 Atomic orbital electron populations 1.20895 0.87196 1.03920 1.04688 1.21470 0.97527 0.86383 0.89088 1.67729 1.09071 1.31649 1.17332 1.20109 0.84190 0.85126 0.93059 1.84724 1.76042 1.31708 1.33833 1.67708 1.42398 0.98322 1.17493 1.21419 0.90907 0.92899 0.89762 1.20879 1.00049 0.92097 1.03722 1.21555 0.95065 0.98411 1.03428 1.20364 1.00117 0.90423 0.98784 1.21645 1.01775 0.98179 0.94840 1.20208 0.79915 0.86264 0.83201 1.90493 1.60217 1.67596 1.31815 1.43396 1.49771 1.18144 1.05091 1.19106 1.35053 0.95700 0.96613 0.90029 1.25506 0.94347 0.98586 0.96496 1.69981 1.20273 1.17551 1.40582 0.86414 0.80504 0.80401 0.80891 1.18869 1.20321 1.20479 1.21572 0.91168 0.85826 0.98604 1.22586 0.96384 0.97299 0.99540 1.22456 0.96443 0.97940 0.99286 1.22253 0.95348 0.99168 0.98622 1.22393 0.99586 0.97804 0.96740 0.88781 0.90378 0.89134 0.73759 0.89612 0.89994 0.88992 0.89886 0.90414 0.90782 0.86828 0.91916 0.90496 0.89057 0.93186 0.92619 0.92491 0.93052 0.91704 0.93021 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.84 36.01 0.35 -1.28 16 2 C 0.20 3.39 6.82 -82.26 -0.56 2.83 16 3 N -0.53 -9.27 10.40 -10.95 -0.11 -9.39 16 4 C 0.48 8.09 8.72 -91.25 -0.80 7.30 16 5 O -0.46 -6.49 13.64 -18.06 -0.25 -6.73 16 6 N -0.53 -9.02 10.40 -10.95 -0.11 -9.13 16 7 C 0.20 3.15 6.82 -82.26 -0.56 2.59 16 8 C -0.11 -1.43 9.45 36.01 0.34 -1.09 16 9 C -0.18 -3.02 5.17 -104.36 -0.54 -3.56 16 10 C -0.06 -1.02 3.60 -27.88 -0.10 -1.12 16 11 C -0.12 -2.56 3.99 -27.88 -0.11 -2.67 16 12 C 0.51 11.95 7.19 -10.99 -0.08 11.87 16 13 O -0.61 -15.34 15.33 5.55 0.09 -15.25 16 14 N -0.44 -10.17 2.35 -106.54 -0.25 -10.43 16 15 C -0.34 -7.77 6.91 -14.93 -0.10 -7.87 16 16 H 0.08 1.88 7.18 -52.49 -0.38 1.51 16 17 C 0.06 1.34 3.46 -17.47 -0.06 1.28 16 18 N -0.85 -20.31 11.70 55.50 0.65 -19.66 16 19 Si 0.89 18.73 29.61 -169.99 -5.03 13.70 16 20 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 C 0.13 2.75 3.29 -66.82 -0.22 2.53 16 24 C -0.12 -2.35 6.42 -25.04 -0.16 -2.51 16 25 C -0.12 -1.96 6.91 -24.70 -0.17 -2.13 16 26 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 27 C -0.13 -2.26 6.25 -25.62 -0.16 -2.42 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.30 6.07 -51.93 -0.31 0.98 16 31 H 0.40 3.31 9.06 45.56 0.41 3.72 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.22 6.04 -51.93 -0.31 0.91 16 35 H 0.08 1.48 6.03 -51.92 -0.31 1.17 16 36 H 0.08 1.30 6.79 -51.93 -0.35 0.94 16 37 H 0.07 1.49 7.41 -51.93 -0.38 1.10 16 38 H 0.11 2.53 5.10 -51.93 -0.26 2.26 16 39 H 0.27 6.21 8.32 -40.82 -0.34 5.87 16 40 H 0.08 1.71 6.94 -51.93 -0.36 1.35 16 41 H 0.09 2.05 7.09 -51.93 -0.37 1.68 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.07 1.34 6.84 -51.93 -0.35 0.98 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -29.04 380.69 -8.74 -37.78 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.35 Total: 11.61 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -3.10 Total: 1.77 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.17 Total: -48.61 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.16 Total: -21.99 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.04 -8.74 -37.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330360822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.186 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds