Wall clock time and date at job start Tue Mar 31 2020 18:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32299 * 120.40995 * 2 1 4 4 C 1.32321 * 120.75753 * 180.02562 * 3 2 1 5 5 O 1.35457 * 119.19524 * 179.97438 * 4 3 2 6 6 N 1.32322 * 121.61227 * 359.95219 * 4 3 2 7 7 C 1.32303 * 120.75523 * 0.02562 * 6 4 3 8 8 C 1.50700 * 120.40771 * 180.02562 * 7 6 4 9 9 C 1.38592 * 119.17723 * 0.02562 * 7 6 4 10 10 C 1.50699 * 120.73769 * 179.72423 * 9 7 6 11 11 C 1.52999 * 109.47161 * 90.00213 * 10 9 7 12 12 C 1.50701 * 109.46790 * 180.02562 * 11 10 9 13 13 O 1.21293 * 120.00100 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99698 * 179.97438 * 12 11 10 15 15 C 1.37102 * 120.00358 * 0.02562 * 14 12 11 16 16 H 1.07999 * 119.99997 * 233.92431 * 15 14 12 17 17 C 1.38950 * 119.99712 * 53.91270 * 15 14 12 18 18 N 1.31410 * 120.00284 * 22.97921 * 17 15 14 19 19 Si 1.86799 * 119.99838 * 202.96489 * 17 15 14 20 20 H 1.48504 * 109.47122 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46806 * 120.00409 * 19 17 15 22 22 H 1.48492 * 109.47604 * 240.00416 * 19 17 15 23 23 C 1.46501 * 120.00120 * 179.97438 * 14 12 11 24 24 C 1.54263 * 110.03463 * 239.37218 * 23 14 12 25 25 C 1.54957 * 104.16437 * 217.13326 * 24 23 14 26 26 C 1.54899 * 102.77309 * 37.88575 * 25 24 23 27 27 C 1.53870 * 110.03784 * 122.15148 * 23 14 12 28 28 H 1.08999 * 109.47156 * 270.00344 * 1 2 3 29 29 H 1.09001 * 109.46893 * 30.00215 * 1 2 3 30 30 H 1.09000 * 109.47079 * 149.99945 * 1 2 3 31 31 H 0.96702 * 113.99510 * 269.97688 * 5 4 3 32 32 H 1.09002 * 109.47229 * 269.97711 * 8 7 6 33 33 H 1.08998 * 109.47390 * 29.98055 * 8 7 6 34 34 H 1.09004 * 109.46806 * 149.98422 * 8 7 6 35 35 H 1.09010 * 109.46626 * 209.99973 * 10 9 7 36 36 H 1.09002 * 109.47135 * 329.99528 * 10 9 7 37 37 H 1.09005 * 109.46781 * 299.99179 * 11 10 9 38 38 H 1.08996 * 109.47282 * 59.99889 * 11 10 9 39 39 H 0.96995 * 120.00453 * 174.68372 * 18 17 15 40 40 H 1.09007 * 110.01383 * 0.75769 * 23 14 12 41 41 H 1.09004 * 110.48617 * 335.78077 * 24 23 14 42 42 H 1.09000 * 110.49157 * 98.42229 * 24 23 14 43 43 H 1.08996 * 110.72524 * 279.57536 * 25 24 23 44 44 H 1.09000 * 110.92980 * 156.28703 * 25 24 23 45 45 H 1.09004 * 110.48321 * 203.40607 * 26 25 24 46 46 H 1.09005 * 110.59839 * 80.82128 * 26 25 24 47 47 H 1.08990 * 110.03750 * 238.57816 * 27 23 14 48 48 H 1.09006 * 110.02933 * 0.02562 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1767 1.1410 0.0000 4 6 3.4999 1.1490 -0.0005 5 8 4.1534 2.3355 -0.0010 6 7 4.2003 0.0264 -0.0001 7 6 3.5938 -1.1495 0.0003 8 6 4.3992 -2.4232 0.0014 9 6 2.2086 -1.1952 -0.0002 10 6 1.4816 -2.5152 -0.0059 11 6 1.2351 -2.9680 1.4346 12 6 0.5086 -4.2884 1.4287 13 8 0.2163 -4.8151 0.3760 14 7 0.1838 -4.8838 2.5933 15 6 0.5137 -4.2883 3.7833 16 1 1.0763 -4.8370 4.5241 17 6 0.1245 -2.9786 4.0361 18 7 -0.8993 -2.4618 3.3944 19 14 1.0563 -1.9525 5.2884 20 1 2.1597 -2.7602 5.8676 21 1 1.6199 -0.7507 4.6226 22 1 0.1306 -1.5307 6.3701 23 6 -0.5230 -6.1671 2.5877 24 6 -1.8702 -6.0317 3.3269 25 6 -2.0300 -7.3799 4.0739 26 6 -0.5832 -7.6922 4.5304 27 6 0.2949 -7.2228 3.3521 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.3431 2.6796 -0.8846 32 1 4.5935 -2.7311 -1.0260 33 1 5.3456 -2.2542 0.5152 34 1 3.8411 -3.2055 0.5157 35 1 0.5268 -2.4018 -0.5196 36 1 2.0859 -3.2607 -0.5229 37 1 2.1899 -3.0814 1.9481 38 1 0.6308 -2.2226 1.9514 39 1 -1.2192 -1.5757 3.6252 40 1 -0.6913 -6.4959 1.5621 41 1 -1.8347 -5.2047 4.0362 42 1 -2.6835 -5.8903 2.6151 43 1 -2.3976 -8.1533 3.3995 44 1 -2.6916 -7.2728 4.9335 45 1 -0.4582 -8.7622 4.6967 46 1 -0.3377 -7.1353 5.4347 47 1 0.5229 -8.0641 2.6979 48 1 1.2175 -6.7802 3.7277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330360822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:35 Heat of formation + Delta-G solvation = -60.500812 kcal Electronic energy + Delta-G solvation = -30055.974425 eV Core-core repulsion = 26110.041752 eV Total energy + Delta-G solvation = -3945.932673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.46762 -40.74497 -38.88496 -38.28906 -35.99312 -35.95045 -35.49471 -33.27245 -31.49969 -30.54945 -29.41979 -29.00489 -28.22584 -26.66163 -25.52455 -23.13161 -22.90575 -21.38605 -21.13337 -20.96380 -19.76812 -19.29348 -18.41567 -17.45318 -17.26214 -17.12864 -16.29015 -16.12533 -15.93898 -15.72097 -15.17172 -15.00521 -14.68427 -14.64020 -14.45168 -14.15662 -14.12434 -13.81239 -13.59946 -13.40532 -13.27925 -13.25716 -13.16229 -12.92795 -12.78205 -12.58075 -12.43347 -12.25742 -12.11073 -11.93913 -11.85015 -11.83454 -11.77978 -11.40462 -11.34650 -11.27357 -10.71777 -10.26075 -10.20286 -9.97166 -9.10540 -8.30580 -6.11911 -0.31314 -0.10583 1.33587 1.45467 1.50526 1.99389 2.17539 2.32677 2.45360 2.97380 3.00606 3.08311 3.34306 3.72836 3.75422 3.91868 3.96198 4.06442 4.23019 4.31536 4.37787 4.47069 4.56462 4.61601 4.63638 4.67324 4.70550 4.78465 4.83271 4.85094 4.86395 4.88547 4.95378 5.00245 5.11948 5.12815 5.19230 5.20228 5.28150 5.34675 5.47232 5.48262 5.56327 5.61065 5.70179 5.79903 6.19538 6.50133 6.77013 6.88756 7.04212 7.73404 8.18240 8.73040 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003839 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.624024 B = 7292.515692 C = 7834.232285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.192 3.808 3 N -0.548 5.548 4 C 0.478 3.522 5 O -0.464 6.464 6 N -0.544 5.544 7 C 0.196 3.804 8 C -0.109 4.109 9 C -0.193 4.193 10 C -0.043 4.043 11 C -0.115 4.115 12 C 0.499 3.501 13 O -0.639 6.639 14 N -0.450 5.450 15 C -0.340 4.340 16 H 0.083 0.917 17 C 0.036 3.964 18 N -0.869 5.869 19 Si 0.940 3.060 20 H -0.256 1.256 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.121 3.879 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.109 4.109 27 C -0.121 4.121 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.429 0.571 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -0.491 -3.713 5.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.048 3.952 3 N -0.275 5.275 4 C 0.173 3.827 5 O -0.271 6.271 6 N -0.270 5.270 7 C 0.050 3.950 8 C -0.165 4.165 9 C -0.198 4.198 10 C -0.081 4.081 11 C -0.154 4.154 12 C 0.290 3.710 13 O -0.528 6.528 14 N -0.169 5.169 15 C -0.468 4.468 16 H 0.100 0.900 17 C -0.170 4.170 18 N -0.505 5.505 19 Si 0.765 3.235 20 H -0.180 1.180 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.017 3.983 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.147 4.147 27 C -0.159 4.159 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.291 0.709 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.926 0.353 -3.656 6.145 hybrid contribution -0.223 0.592 0.281 0.692 sum 4.703 0.946 -3.375 5.865 Atomic orbital electron populations 1.20874 0.86329 1.04924 1.04070 1.21751 0.98295 0.86518 0.88656 1.67788 1.09505 1.31773 1.18395 1.20382 0.84291 0.85908 0.92086 1.84672 1.75598 1.30685 1.36102 1.67827 1.42350 0.98531 1.18335 1.21898 0.90973 0.93793 0.88307 1.20972 0.99878 0.90373 1.05323 1.21480 0.95519 0.97815 1.04951 1.20153 1.00099 0.91105 0.96786 1.21514 1.00972 0.96243 0.96710 1.20717 0.80136 0.87121 0.83045 1.90460 1.61363 1.68449 1.32484 1.43590 1.49486 1.18738 1.05039 1.19183 1.35092 0.95972 0.96554 0.89970 1.25909 0.94511 0.98979 0.97592 1.70039 1.21139 1.17749 1.41577 0.85674 0.79742 0.78780 0.79279 1.17983 1.21694 1.20436 1.21777 0.92361 0.85901 0.98226 1.22479 0.95457 0.98750 0.98824 1.22423 0.97171 0.95792 0.99670 1.22228 0.94282 1.00996 0.97153 1.22333 0.98881 0.97182 0.97540 0.90057 0.88562 0.88965 0.70879 0.87214 0.88934 0.89469 0.90579 0.89583 0.90636 0.88471 0.91873 0.92426 0.92057 0.94298 0.90728 0.90960 0.89846 0.92295 0.91418 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.14 9.84 71.24 0.70 -2.44 16 2 C 0.19 6.47 6.82 42.57 0.29 6.76 16 3 N -0.55 -18.79 10.40 -301.49 -3.14 -21.92 16 4 C 0.48 15.63 8.72 180.57 1.57 17.20 16 5 O -0.46 -12.38 13.64 -87.54 -1.19 -13.58 16 6 N -0.54 -17.74 10.40 -301.49 -3.14 -20.87 16 7 C 0.20 6.09 6.82 42.57 0.29 6.38 16 8 C -0.11 -2.63 9.45 71.24 0.67 -1.95 16 9 C -0.19 -6.42 5.17 -19.70 -0.10 -6.52 16 10 C -0.04 -1.50 3.60 29.85 0.11 -1.39 16 11 C -0.11 -4.76 3.99 29.85 0.12 -4.65 16 12 C 0.50 23.65 7.19 87.66 0.63 24.28 16 13 O -0.64 -32.55 15.33 -3.07 -0.05 -32.60 16 14 N -0.45 -20.89 2.35 -609.38 -1.43 -22.32 16 15 C -0.34 -15.77 6.91 84.04 0.58 -15.19 16 16 H 0.08 3.77 7.18 -2.91 -0.02 3.75 16 17 C 0.04 1.67 3.46 84.93 0.29 1.96 16 18 N -0.87 -42.34 11.70 21.66 0.25 -42.09 16 19 Si 0.94 38.39 29.61 68.60 2.03 40.42 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 23 C 0.12 5.06 3.29 45.71 0.15 5.22 16 24 C -0.12 -4.59 6.42 31.69 0.20 -4.39 16 25 C -0.11 -3.33 6.91 31.91 0.22 -3.11 16 26 C -0.11 -3.13 6.83 31.67 0.22 -2.91 16 27 C -0.12 -4.15 6.25 31.31 0.20 -3.95 16 28 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.09 2.69 6.07 -2.39 -0.01 2.68 16 31 H 0.43 6.24 9.06 -74.06 -0.67 5.57 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 2.21 6.04 -2.39 -0.01 2.20 16 35 H 0.08 2.76 6.03 -2.38 -0.01 2.74 16 36 H 0.09 2.84 6.79 -2.39 -0.02 2.83 16 37 H 0.08 3.05 7.41 -2.38 -0.02 3.04 16 38 H 0.10 4.41 5.10 -2.39 -0.01 4.40 16 39 H 0.27 12.69 8.32 -92.71 -0.77 11.92 16 40 H 0.06 2.60 6.94 -2.38 -0.02 2.59 16 41 H 0.06 2.78 7.09 -2.39 -0.02 2.77 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.06 2.15 6.84 -2.38 -0.02 2.13 16 Total: -1.00 -62.29 380.69 -0.19 -62.48 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.32 Total: 35.17 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.15 Total: 15.30 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -7.45 Total: -107.21 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -1.24 Total: -46.17 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -62.29 -0.19 -62.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330360822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.983 kcal (2) G-P(sol) polarization free energy of solvation -62.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds