Wall clock time and date at job start Tue Mar 31 2020 17:37:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.38353 * 119.41332 * 2 1
4 4 C 1.38332 * 119.46553 * 180.27705 * 3 2 1
5 5 C 1.50700 * 120.82743 * 179.73054 * 4 3 2
6 6 C 1.39989 * 118.34814 * 359.45550 * 4 3 2
7 7 C 1.47524 * 120.60106 * 180.25263 * 6 4 3
8 8 O 1.21592 * 119.99874 * 89.99944 * 7 6 4
9 9 N 1.34769 * 119.99762 * 270.00486 * 7 6 4
10 10 C 1.46503 * 119.99990 * 179.97438 * 9 7 6
11 11 C 1.52995 * 109.47459 * 179.97438 * 10 9 7
12 12 C 1.53041 * 109.45881 * 295.02850 * 11 10 9
13 13 C 1.53199 * 109.30995 * 178.59988 * 12 11 10
14 14 N 1.46929 * 108.76565 * 54.65612 * 13 12 11
15 15 C 1.36936 * 120.62809 * 126.40549 * 14 13 12
16 16 H 1.08000 * 119.99968 * 331.81796 * 15 14 13
17 17 C 1.38811 * 119.99640 * 151.82197 * 15 14 13
18 18 N 1.31616 * 120.00145 * 343.08074 * 17 15 14
19 19 Si 1.86803 * 119.99948 * 163.07747 * 17 15 14
20 20 H 1.48499 * 109.47021 * 59.99935 * 19 17 15
21 21 H 1.48494 * 109.47174 * 180.02562 * 19 17 15
22 22 H 1.48503 * 109.47114 * 299.99902 * 19 17 15
23 23 C 1.46924 * 118.73644 * 306.38043 * 14 13 12
24 24 C 1.53037 * 109.46044 * 174.97170 * 11 10 9
25 25 C 1.40281 * 118.80309 * 0.27352 * 6 4 3
26 26 O 1.35426 * 119.80270 * 179.97438 * 25 6 4
27 27 N 1.31892 * 119.40826 * 179.72436 * 2 1 3
28 28 H 1.09002 * 109.47039 * 270.27698 * 1 2 3
29 29 H 1.08994 * 109.47068 * 30.27463 * 1 2 3
30 30 H 1.09007 * 109.46893 * 150.27604 * 1 2 3
31 31 H 1.08011 * 120.26497 * 0.02562 * 3 2 1
32 32 H 1.09000 * 109.46878 * 269.71998 * 5 4 3
33 33 H 1.09002 * 109.46860 * 149.71830 * 5 4 3
34 34 H 1.08998 * 109.47073 * 29.72070 * 5 4 3
35 35 H 0.96996 * 120.00572 * 359.97438 * 9 7 6
36 36 H 1.09002 * 109.47181 * 300.00022 * 10 9 7
37 37 H 1.09000 * 109.47317 * 59.99592 * 10 9 7
38 38 H 1.09000 * 109.46074 * 54.99941 * 11 10 9
39 39 H 1.09005 * 109.49715 * 298.56066 * 12 11 10
40 40 H 1.08995 * 109.50130 * 58.66301 * 12 11 10
41 41 H 1.08997 * 109.59640 * 294.86242 * 13 12 11
42 42 H 1.09004 * 109.69744 * 174.50548 * 13 12 11
43 43 H 0.97003 * 120.00064 * 179.97438 * 18 17 15
44 44 H 1.09001 * 109.59158 * 293.82253 * 23 14 13
45 45 H 1.09000 * 109.70200 * 173.46856 * 23 14 13
46 46 H 1.08993 * 109.50207 * 301.33519 * 24 11 10
47 47 H 1.09000 * 109.49877 * 61.43692 * 24 11 10
48 48 H 0.96701 * 114.00309 * 89.99944 * 26 25 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1864 1.2052 0.0000
4 6 3.5697 1.2065 -0.0058
5 6 4.3408 2.5012 -0.0121
6 6 4.2356 -0.0249 0.0002
7 6 5.7098 -0.0815 0.0000
8 8 6.3176 -0.0995 1.0529
9 7 6.3827 -0.1132 -1.1673
10 6 7.8466 -0.1688 -1.1675
11 6 8.3558 -0.1963 -2.6100
12 6 7.9006 -1.4912 -3.2868
13 6 8.3823 -1.4993 -4.7410
14 7 9.8363 -1.2884 -4.7585
15 6 10.6603 -2.1634 -5.4146
16 1 10.3701 -3.1976 -5.5270
17 6 11.8687 -1.7211 -5.9353
18 7 12.0816 -0.4330 -6.1014
19 14 13.1927 -2.9542 -6.4001
20 1 12.6687 -3.8742 -7.4413
21 1 14.3781 -2.2322 -6.9279
22 1 13.5840 -3.7363 -5.1999
23 6 10.3891 -0.1206 -4.0590
24 6 9.8846 -0.1278 -2.6125
25 6 3.4758 -1.2041 0.0059
26 8 4.0991 -2.4064 0.0112
27 7 2.1546 -1.1490 0.0055
28 1 -0.3633 0.0050 1.0277
29 1 -0.3633 0.8875 -0.5181
30 1 -0.3633 -0.8925 -0.5096
31 1 1.6411 2.1375 0.0004
32 1 4.5267 2.8084 -1.0413
33 1 5.2914 2.3605 0.5025
34 1 3.7620 3.2712 0.4980
35 1 5.8978 -0.0991 -2.0072
36 1 8.2437 0.7094 -0.6584
37 1 8.1761 -1.0692 -0.6491
38 1 7.9532 0.6585 -3.1536
39 1 8.3234 -2.3459 -2.7585
40 1 6.8125 -1.5507 -3.2639
41 1 7.8903 -0.6989 -5.2936
42 1 8.1467 -2.4591 -5.2008
43 1 12.9261 -0.1239 -6.4649
44 1 10.0608 0.7923 -4.5559
45 1 11.4780 -0.1693 -4.0665
46 1 10.2089 0.7832 -2.1096
47 1 10.2885 -0.9954 -2.0907
48 1 4.2805 -2.7516 0.8961
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330930196.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:37:18
Heat of formation + Delta-G solvation = -35.902918 kcal
Electronic energy + Delta-G solvation = -28702.579035 eV
Core-core repulsion = 24757.713006 eV
Total energy + Delta-G solvation = -3944.866028 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.24687 -39.39712 -37.80121 -37.64507 -34.97951 -34.56649 -32.85494 -32.12504
-30.81766 -29.76753 -28.86855 -27.96881 -26.65642 -24.23992 -23.50125 -22.35033
-21.97680 -21.07375 -20.58727 -19.15965 -18.73718 -17.93425 -17.51866 -16.71477
-16.25590 -15.76987 -15.06603 -15.01626 -14.76211 -14.50087 -14.04832 -13.86076
-13.70787 -13.63995 -13.50385 -13.38079 -13.24466 -13.04739 -12.79818 -12.41579
-12.33684 -12.31948 -12.21794 -11.95764 -11.86669 -11.33810 -10.98971 -10.71144
-10.51303 -10.49045 -10.24127 -10.22521 -9.95736 -9.90093 -9.69845 -9.54744
-9.43631 -9.16499 -9.06303 -8.45976 -6.66229 -5.78380 -3.20698 0.42259
0.72668 2.39400 2.94790 3.05764 3.38745 3.39235 3.44716 3.46400
4.08941 4.13700 4.47802 4.50605 4.61186 4.80945 4.91250 4.99889
5.10054 5.13874 5.17537 5.19362 5.23066 5.37537 5.41385 5.43892
5.57102 5.60015 5.64502 5.75322 5.85609 5.90494 6.03613 6.07867
6.13000 6.32291 6.37001 6.47097 6.59820 6.67961 6.76018 6.81938
6.98820 7.11115 7.35049 7.40813 7.51196 7.65592 7.80131 8.05267
8.46124 9.22366 9.85787 10.42583 11.30172
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.022838 B = 0.002315 C = 0.002253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1225.737710 B =12094.724535 C =12425.123449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C 0.168 3.832
3 C -0.188 4.188
4 C 0.012 3.988
5 C -0.126 4.126
6 C -0.203 4.203
7 C 0.574 3.426
8 O -0.537 6.537
9 N -0.709 5.709
10 C 0.122 3.878
11 C -0.089 4.089
12 C -0.127 4.127
13 C 0.146 3.854
14 N -0.592 5.592
15 C -0.252 4.252
16 H 0.064 0.936
17 C 0.002 3.998
18 N -0.904 5.904
19 Si 0.902 3.098
20 H -0.283 1.283
21 H -0.291 1.291
22 H -0.284 1.284
23 C 0.172 3.828
24 C -0.133 4.133
25 C 0.357 3.643
26 O -0.474 6.474
27 N -0.506 5.506
28 H 0.083 0.917
29 H 0.080 0.920
30 H 0.081 0.919
31 H 0.145 0.855
32 H 0.086 0.914
33 H 0.077 0.923
34 H 0.080 0.920
35 H 0.402 0.598
36 H 0.066 0.934
37 H 0.068 0.932
38 H 0.068 0.932
39 H 0.060 0.940
40 H 0.047 0.953
41 H 0.015 0.985
42 H 0.053 0.947
43 H 0.254 0.746
44 H 0.017 0.983
45 H 0.088 0.912
46 H 0.051 0.949
47 H 0.058 0.942
48 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.555 5.919 13.788 26.264
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.030 3.970
3 C -0.207 4.207
4 C 0.004 3.996
5 C -0.183 4.183
6 C -0.209 4.209
7 C 0.358 3.642
8 O -0.415 6.415
9 N -0.359 5.359
10 C -0.001 4.001
11 C -0.108 4.108
12 C -0.167 4.167
13 C 0.019 3.981
14 N -0.315 5.315
15 C -0.382 4.382
16 H 0.082 0.918
17 C -0.197 4.197
18 N -0.548 5.548
19 Si 0.732 3.268
20 H -0.209 1.209
21 H -0.217 1.217
22 H -0.210 1.210
23 C 0.046 3.954
24 C -0.172 4.172
25 C 0.177 3.823
26 O -0.282 6.282
27 N -0.227 5.227
28 H 0.101 0.899
29 H 0.099 0.901
30 H 0.100 0.900
31 H 0.162 0.838
32 H 0.105 0.895
33 H 0.096 0.904
34 H 0.099 0.901
35 H 0.237 0.763
36 H 0.084 0.916
37 H 0.087 0.913
38 H 0.087 0.913
39 H 0.079 0.921
40 H 0.065 0.935
41 H 0.033 0.967
42 H 0.071 0.929
43 H 0.064 0.936
44 H 0.035 0.965
45 H 0.106 0.894
46 H 0.069 0.931
47 H 0.077 0.923
48 H 0.266 0.734
Dipole moment (debyes) X Y Z Total
from point charges -21.356 5.214 13.847 25.981
hybrid contribution 1.000 -0.028 -0.201 1.020
sum -20.356 5.187 13.647 25.050
Atomic orbital electron populations
1.20808 0.88097 1.04026 1.03521 1.21195 0.97018 0.87056 0.91723
1.21785 0.93610 0.99656 1.05695 1.20279 0.93694 0.94200 0.91435
1.20964 1.00497 0.93035 1.03763 1.20923 0.95100 0.94112 1.10795
1.17747 0.85877 0.76236 0.84318 1.90817 1.69319 1.50097 1.31248
1.46095 1.08325 1.73363 1.08114 1.21659 0.77779 1.02071 0.98542
1.21313 0.97837 0.98931 0.92764 1.22074 0.98387 0.96869 0.99322
1.20887 0.86237 0.98581 0.92384 1.44042 0.99852 1.28289 1.59306
1.19145 0.99637 0.90123 1.29265 0.91800 1.25041 1.00140 0.95794
0.98698 1.70018 1.24471 1.12548 1.47801 0.86372 0.81483 0.80619
0.78310 1.20896 1.21651 1.21028 1.20756 0.99926 0.88626 0.86078
1.22181 0.92812 1.00472 1.01769 1.19015 0.86336 0.84476 0.92483
1.84710 1.76596 1.32633 1.34252 1.67067 1.09120 1.30422 1.16048
0.89879 0.90141 0.90030 0.83766 0.89507 0.90386 0.90074 0.76304
0.91590 0.91346 0.91327 0.92094 0.93456 0.96665 0.92865 0.93603
0.96490 0.89397 0.93067 0.92348 0.73382
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.58 10.16 36.00 0.37 -0.21 16
2 C 0.17 1.49 6.78 -82.53 -0.56 0.93 16
3 C -0.19 -1.45 9.41 -39.50 -0.37 -1.83 16
4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16
5 C -0.13 -0.96 9.69 36.01 0.35 -0.61 16
6 C -0.20 -2.39 5.66 -104.69 -0.59 -2.98 16
7 C 0.57 7.79 5.42 -12.48 -0.07 7.73 16
8 O -0.54 -9.00 17.11 5.28 0.09 -8.91 16
9 N -0.71 -9.01 5.27 -61.35 -0.32 -9.33 16
10 C 0.12 1.72 5.06 -4.04 -0.02 1.70 16
11 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16
12 C -0.13 -2.14 5.25 -26.61 -0.14 -2.28 16
13 C 0.15 3.01 6.52 -3.71 -0.02 2.98 16
14 N -0.59 -14.70 2.99 -172.31 -0.52 -15.21 16
15 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16
16 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16
17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16
18 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16
19 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16
20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
23 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16
24 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16
25 C 0.36 4.32 7.77 -16.61 -0.13 4.19 16
26 O -0.47 -5.55 13.01 -17.97 -0.23 -5.78 16
27 N -0.51 -5.87 10.28 -9.21 -0.09 -5.96 16
28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
29 H 0.08 0.26 8.07 -51.93 -0.42 -0.15 16
30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16
32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.08 0.74 7.19 -51.93 -0.37 0.37 16
34 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16
35 H 0.40 4.62 7.64 -40.82 -0.31 4.30 16
36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16
40 H 0.05 0.69 7.15 -51.93 -0.37 0.32 16
41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16
42 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16
43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
45 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16
46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
48 H 0.41 3.13 9.06 45.56 0.41 3.54 16
LS Contribution 390.80 15.07 5.89 5.89
Total: -1.00 -33.83 390.80 -8.83 -42.65
By element:
Atomic # 1 Polarization: 10.46 SS G_CDS: -6.83 Total: 3.62 kcal
Atomic # 6 Polarization: 4.24 SS G_CDS: -2.40 Total: 1.84 kcal
Atomic # 7 Polarization: -55.72 SS G_CDS: -0.31 Total: -56.03 kcal
Atomic # 8 Polarization: -14.55 SS G_CDS: -0.14 Total: -14.69 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -33.83 -8.83 -42.65 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330930196.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.750 kcal
(2) G-P(sol) polarization free energy of solvation -33.826 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.076 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.903 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds