Wall clock time and date at job start Tue Mar 31 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38353 * 119.41332 * 2 1 4 4 C 1.38332 * 119.46553 * 180.27705 * 3 2 1 5 5 C 1.50700 * 120.82743 * 179.73054 * 4 3 2 6 6 C 1.39989 * 118.34814 * 359.45550 * 4 3 2 7 7 C 1.47524 * 120.60106 * 180.25263 * 6 4 3 8 8 O 1.21592 * 119.99874 * 89.99944 * 7 6 4 9 9 N 1.34769 * 119.99762 * 270.00486 * 7 6 4 10 10 C 1.46503 * 119.99990 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47459 * 179.97438 * 10 9 7 12 12 C 1.53041 * 109.45881 * 295.02850 * 11 10 9 13 13 C 1.53199 * 109.30995 * 178.59988 * 12 11 10 14 14 N 1.46929 * 108.76565 * 54.65612 * 13 12 11 15 15 C 1.36936 * 120.62809 * 126.40549 * 14 13 12 16 16 H 1.08000 * 119.99968 * 331.81796 * 15 14 13 17 17 C 1.38811 * 119.99640 * 151.82197 * 15 14 13 18 18 N 1.31616 * 120.00145 * 343.08074 * 17 15 14 19 19 Si 1.86803 * 119.99948 * 163.07747 * 17 15 14 20 20 H 1.48499 * 109.47021 * 59.99935 * 19 17 15 21 21 H 1.48494 * 109.47174 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47114 * 299.99902 * 19 17 15 23 23 C 1.46924 * 118.73644 * 306.38043 * 14 13 12 24 24 C 1.53037 * 109.46044 * 174.97170 * 11 10 9 25 25 C 1.40281 * 118.80309 * 0.27352 * 6 4 3 26 26 O 1.35426 * 119.80270 * 179.97438 * 25 6 4 27 27 N 1.31892 * 119.40826 * 179.72436 * 2 1 3 28 28 H 1.09002 * 109.47039 * 270.27698 * 1 2 3 29 29 H 1.08994 * 109.47068 * 30.27463 * 1 2 3 30 30 H 1.09007 * 109.46893 * 150.27604 * 1 2 3 31 31 H 1.08011 * 120.26497 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46878 * 269.71998 * 5 4 3 33 33 H 1.09002 * 109.46860 * 149.71830 * 5 4 3 34 34 H 1.08998 * 109.47073 * 29.72070 * 5 4 3 35 35 H 0.96996 * 120.00572 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47181 * 300.00022 * 10 9 7 37 37 H 1.09000 * 109.47317 * 59.99592 * 10 9 7 38 38 H 1.09000 * 109.46074 * 54.99941 * 11 10 9 39 39 H 1.09005 * 109.49715 * 298.56066 * 12 11 10 40 40 H 1.08995 * 109.50130 * 58.66301 * 12 11 10 41 41 H 1.08997 * 109.59640 * 294.86242 * 13 12 11 42 42 H 1.09004 * 109.69744 * 174.50548 * 13 12 11 43 43 H 0.97003 * 120.00064 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.59158 * 293.82253 * 23 14 13 45 45 H 1.09000 * 109.70200 * 173.46856 * 23 14 13 46 46 H 1.08993 * 109.50207 * 301.33519 * 24 11 10 47 47 H 1.09000 * 109.49877 * 61.43692 * 24 11 10 48 48 H 0.96701 * 114.00309 * 89.99944 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2065 -0.0058 5 6 4.3408 2.5012 -0.0121 6 6 4.2356 -0.0249 0.0002 7 6 5.7098 -0.0815 0.0000 8 8 6.3176 -0.0995 1.0529 9 7 6.3827 -0.1132 -1.1673 10 6 7.8466 -0.1688 -1.1675 11 6 8.3558 -0.1963 -2.6100 12 6 7.9006 -1.4912 -3.2868 13 6 8.3823 -1.4993 -4.7410 14 7 9.8363 -1.2884 -4.7585 15 6 10.6603 -2.1634 -5.4146 16 1 10.3701 -3.1976 -5.5270 17 6 11.8687 -1.7211 -5.9353 18 7 12.0816 -0.4330 -6.1014 19 14 13.1927 -2.9542 -6.4001 20 1 12.6687 -3.8742 -7.4413 21 1 14.3781 -2.2322 -6.9279 22 1 13.5840 -3.7363 -5.1999 23 6 10.3891 -0.1206 -4.0590 24 6 9.8846 -0.1278 -2.6125 25 6 3.4758 -1.2041 0.0059 26 8 4.0991 -2.4064 0.0112 27 7 2.1546 -1.1490 0.0055 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3633 -0.8925 -0.5096 31 1 1.6411 2.1375 0.0004 32 1 4.5267 2.8084 -1.0413 33 1 5.2914 2.3605 0.5025 34 1 3.7620 3.2712 0.4980 35 1 5.8978 -0.0991 -2.0072 36 1 8.2437 0.7094 -0.6584 37 1 8.1761 -1.0692 -0.6491 38 1 7.9532 0.6585 -3.1536 39 1 8.3234 -2.3459 -2.7585 40 1 6.8125 -1.5507 -3.2639 41 1 7.8903 -0.6989 -5.2936 42 1 8.1467 -2.4591 -5.2008 43 1 12.9261 -0.1239 -6.4649 44 1 10.0608 0.7923 -4.5559 45 1 11.4780 -0.1693 -4.0665 46 1 10.2089 0.7832 -2.1096 47 1 10.2885 -0.9954 -2.0907 48 1 4.2805 -2.7516 0.8961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330930196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:18 Heat of formation + Delta-G solvation = -35.902918 kcal Electronic energy + Delta-G solvation = -28702.579035 eV Core-core repulsion = 24757.713006 eV Total energy + Delta-G solvation = -3944.866028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.24687 -39.39712 -37.80121 -37.64507 -34.97951 -34.56649 -32.85494 -32.12504 -30.81766 -29.76753 -28.86855 -27.96881 -26.65642 -24.23992 -23.50125 -22.35033 -21.97680 -21.07375 -20.58727 -19.15965 -18.73718 -17.93425 -17.51866 -16.71477 -16.25590 -15.76987 -15.06603 -15.01626 -14.76211 -14.50087 -14.04832 -13.86076 -13.70787 -13.63995 -13.50385 -13.38079 -13.24466 -13.04739 -12.79818 -12.41579 -12.33684 -12.31948 -12.21794 -11.95764 -11.86669 -11.33810 -10.98971 -10.71144 -10.51303 -10.49045 -10.24127 -10.22521 -9.95736 -9.90093 -9.69845 -9.54744 -9.43631 -9.16499 -9.06303 -8.45976 -6.66229 -5.78380 -3.20698 0.42259 0.72668 2.39400 2.94790 3.05764 3.38745 3.39235 3.44716 3.46400 4.08941 4.13700 4.47802 4.50605 4.61186 4.80945 4.91250 4.99889 5.10054 5.13874 5.17537 5.19362 5.23066 5.37537 5.41385 5.43892 5.57102 5.60015 5.64502 5.75322 5.85609 5.90494 6.03613 6.07867 6.13000 6.32291 6.37001 6.47097 6.59820 6.67961 6.76018 6.81938 6.98820 7.11115 7.35049 7.40813 7.51196 7.65592 7.80131 8.05267 8.46124 9.22366 9.85787 10.42583 11.30172 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.002315 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.737710 B =12094.724535 C =12425.123449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.188 4.188 4 C 0.012 3.988 5 C -0.126 4.126 6 C -0.203 4.203 7 C 0.574 3.426 8 O -0.537 6.537 9 N -0.709 5.709 10 C 0.122 3.878 11 C -0.089 4.089 12 C -0.127 4.127 13 C 0.146 3.854 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.172 3.828 24 C -0.133 4.133 25 C 0.357 3.643 26 O -0.474 6.474 27 N -0.506 5.506 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.015 0.985 42 H 0.053 0.947 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.555 5.919 13.788 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.207 4.207 4 C 0.004 3.996 5 C -0.183 4.183 6 C -0.209 4.209 7 C 0.358 3.642 8 O -0.415 6.415 9 N -0.359 5.359 10 C -0.001 4.001 11 C -0.108 4.108 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.046 3.954 24 C -0.172 4.172 25 C 0.177 3.823 26 O -0.282 6.282 27 N -0.227 5.227 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -21.356 5.214 13.847 25.981 hybrid contribution 1.000 -0.028 -0.201 1.020 sum -20.356 5.187 13.647 25.050 Atomic orbital electron populations 1.20808 0.88097 1.04026 1.03521 1.21195 0.97018 0.87056 0.91723 1.21785 0.93610 0.99656 1.05695 1.20279 0.93694 0.94200 0.91435 1.20964 1.00497 0.93035 1.03763 1.20923 0.95100 0.94112 1.10795 1.17747 0.85877 0.76236 0.84318 1.90817 1.69319 1.50097 1.31248 1.46095 1.08325 1.73363 1.08114 1.21659 0.77779 1.02071 0.98542 1.21313 0.97837 0.98931 0.92764 1.22074 0.98387 0.96869 0.99322 1.20887 0.86237 0.98581 0.92384 1.44042 0.99852 1.28289 1.59306 1.19145 0.99637 0.90123 1.29265 0.91800 1.25041 1.00140 0.95794 0.98698 1.70018 1.24471 1.12548 1.47801 0.86372 0.81483 0.80619 0.78310 1.20896 1.21651 1.21028 1.20756 0.99926 0.88626 0.86078 1.22181 0.92812 1.00472 1.01769 1.19015 0.86336 0.84476 0.92483 1.84710 1.76596 1.32633 1.34252 1.67067 1.09120 1.30422 1.16048 0.89879 0.90141 0.90030 0.83766 0.89507 0.90386 0.90074 0.76304 0.91590 0.91346 0.91327 0.92094 0.93456 0.96665 0.92865 0.93603 0.96490 0.89397 0.93067 0.92348 0.73382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.16 36.00 0.37 -0.21 16 2 C 0.17 1.49 6.78 -82.53 -0.56 0.93 16 3 C -0.19 -1.45 9.41 -39.50 -0.37 -1.83 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16 5 C -0.13 -0.96 9.69 36.01 0.35 -0.61 16 6 C -0.20 -2.39 5.66 -104.69 -0.59 -2.98 16 7 C 0.57 7.79 5.42 -12.48 -0.07 7.73 16 8 O -0.54 -9.00 17.11 5.28 0.09 -8.91 16 9 N -0.71 -9.01 5.27 -61.35 -0.32 -9.33 16 10 C 0.12 1.72 5.06 -4.04 -0.02 1.70 16 11 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 12 C -0.13 -2.14 5.25 -26.61 -0.14 -2.28 16 13 C 0.15 3.01 6.52 -3.71 -0.02 2.98 16 14 N -0.59 -14.70 2.99 -172.31 -0.52 -15.21 16 15 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 16 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16 19 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 24 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16 25 C 0.36 4.32 7.77 -16.61 -0.13 4.19 16 26 O -0.47 -5.55 13.01 -17.97 -0.23 -5.78 16 27 N -0.51 -5.87 10.28 -9.21 -0.09 -5.96 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.26 8.07 -51.93 -0.42 -0.15 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.74 7.19 -51.93 -0.37 0.37 16 34 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.40 4.62 7.64 -40.82 -0.31 4.30 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.69 7.15 -51.93 -0.37 0.32 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.41 3.13 9.06 45.56 0.41 3.54 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -33.83 390.80 -8.83 -42.65 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.83 Total: 3.62 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.40 Total: 1.84 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.31 Total: -56.03 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.14 Total: -14.69 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.83 -8.83 -42.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330930196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.750 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds