Wall clock time and date at job start Tue Mar 31 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38353 * 119.41332 * 2 1 4 4 C 1.38332 * 119.46553 * 180.27705 * 3 2 1 5 5 C 1.50700 * 120.82743 * 179.73054 * 4 3 2 6 6 C 1.39989 * 118.34814 * 359.45550 * 4 3 2 7 7 C 1.47524 * 120.60106 * 180.25263 * 6 4 3 8 8 O 1.21592 * 119.99874 * 89.99944 * 7 6 4 9 9 N 1.34769 * 119.99762 * 270.00486 * 7 6 4 10 10 C 1.46503 * 119.99990 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47459 * 179.97438 * 10 9 7 12 12 C 1.53041 * 109.45881 * 295.02850 * 11 10 9 13 13 C 1.53199 * 109.30995 * 178.59988 * 12 11 10 14 14 N 1.46929 * 108.76565 * 54.65612 * 13 12 11 15 15 C 1.36936 * 120.62809 * 126.40549 * 14 13 12 16 16 H 1.08000 * 119.99968 * 331.81796 * 15 14 13 17 17 C 1.38811 * 119.99640 * 151.82197 * 15 14 13 18 18 N 1.31616 * 120.00145 * 343.08074 * 17 15 14 19 19 Si 1.86803 * 119.99948 * 163.07747 * 17 15 14 20 20 H 1.48499 * 109.47021 * 59.99935 * 19 17 15 21 21 H 1.48494 * 109.47174 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47114 * 299.99902 * 19 17 15 23 23 C 1.46924 * 118.73644 * 306.38043 * 14 13 12 24 24 C 1.53037 * 109.46044 * 174.97170 * 11 10 9 25 25 C 1.40281 * 118.80309 * 0.27352 * 6 4 3 26 26 O 1.35426 * 119.80270 * 179.97438 * 25 6 4 27 27 N 1.31892 * 119.40826 * 179.72436 * 2 1 3 28 28 H 1.09002 * 109.47039 * 270.27698 * 1 2 3 29 29 H 1.08994 * 109.47068 * 30.27463 * 1 2 3 30 30 H 1.09007 * 109.46893 * 150.27604 * 1 2 3 31 31 H 1.08011 * 120.26497 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46878 * 269.71998 * 5 4 3 33 33 H 1.09002 * 109.46860 * 149.71830 * 5 4 3 34 34 H 1.08998 * 109.47073 * 29.72070 * 5 4 3 35 35 H 0.96996 * 120.00572 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47181 * 300.00022 * 10 9 7 37 37 H 1.09000 * 109.47317 * 59.99592 * 10 9 7 38 38 H 1.09000 * 109.46074 * 54.99941 * 11 10 9 39 39 H 1.09005 * 109.49715 * 298.56066 * 12 11 10 40 40 H 1.08995 * 109.50130 * 58.66301 * 12 11 10 41 41 H 1.08997 * 109.59640 * 294.86242 * 13 12 11 42 42 H 1.09004 * 109.69744 * 174.50548 * 13 12 11 43 43 H 0.97003 * 120.00064 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.59158 * 293.82253 * 23 14 13 45 45 H 1.09000 * 109.70200 * 173.46856 * 23 14 13 46 46 H 1.08993 * 109.50207 * 301.33519 * 24 11 10 47 47 H 1.09000 * 109.49877 * 61.43692 * 24 11 10 48 48 H 0.96701 * 114.00309 * 89.99944 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2065 -0.0058 5 6 4.3408 2.5012 -0.0121 6 6 4.2356 -0.0249 0.0002 7 6 5.7098 -0.0815 0.0000 8 8 6.3176 -0.0995 1.0529 9 7 6.3827 -0.1132 -1.1673 10 6 7.8466 -0.1688 -1.1675 11 6 8.3558 -0.1963 -2.6100 12 6 7.9006 -1.4912 -3.2868 13 6 8.3823 -1.4993 -4.7410 14 7 9.8363 -1.2884 -4.7585 15 6 10.6603 -2.1634 -5.4146 16 1 10.3701 -3.1976 -5.5270 17 6 11.8687 -1.7211 -5.9353 18 7 12.0816 -0.4330 -6.1014 19 14 13.1927 -2.9542 -6.4001 20 1 12.6687 -3.8742 -7.4413 21 1 14.3781 -2.2322 -6.9279 22 1 13.5840 -3.7363 -5.1999 23 6 10.3891 -0.1206 -4.0590 24 6 9.8846 -0.1278 -2.6125 25 6 3.4758 -1.2041 0.0059 26 8 4.0991 -2.4064 0.0112 27 7 2.1546 -1.1490 0.0055 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3633 -0.8925 -0.5096 31 1 1.6411 2.1375 0.0004 32 1 4.5267 2.8084 -1.0413 33 1 5.2914 2.3605 0.5025 34 1 3.7620 3.2712 0.4980 35 1 5.8978 -0.0991 -2.0072 36 1 8.2437 0.7094 -0.6584 37 1 8.1761 -1.0692 -0.6491 38 1 7.9532 0.6585 -3.1536 39 1 8.3234 -2.3459 -2.7585 40 1 6.8125 -1.5507 -3.2639 41 1 7.8903 -0.6989 -5.2936 42 1 8.1467 -2.4591 -5.2008 43 1 12.9261 -0.1239 -6.4649 44 1 10.0608 0.7923 -4.5559 45 1 11.4780 -0.1693 -4.0665 46 1 10.2089 0.7832 -2.1096 47 1 10.2885 -0.9954 -2.0907 48 1 4.2805 -2.7516 0.8961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330930196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:18 Heat of formation + Delta-G solvation = -61.508484 kcal Electronic energy + Delta-G solvation = -28703.689375 eV Core-core repulsion = 24757.713006 eV Total energy + Delta-G solvation = -3945.976369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05047 -40.46228 -39.30162 -38.43576 -36.44658 -35.29247 -34.46575 -32.86960 -32.47889 -31.42956 -29.74229 -28.62748 -28.04023 -25.83026 -24.46530 -23.83859 -22.99650 -22.47044 -21.56778 -20.72773 -19.51992 -19.02748 -18.55171 -18.27205 -17.30618 -16.83999 -16.63566 -16.12665 -15.86354 -15.59255 -15.31812 -15.17046 -14.97397 -14.78076 -14.72184 -14.22650 -14.07560 -14.00477 -13.92709 -13.86171 -13.40931 -13.24369 -13.01173 -12.98045 -12.86667 -12.79887 -12.62994 -12.56293 -12.29431 -12.04091 -11.86218 -11.67130 -11.49751 -11.17762 -11.12741 -10.63912 -10.54175 -10.48403 -10.18417 -9.87210 -8.67360 -7.87834 -5.32797 -0.30725 0.03053 1.36467 1.45807 1.48311 1.54905 2.05049 2.28869 2.50874 2.63385 3.26393 3.39920 3.54743 3.61922 3.69571 3.81356 3.90860 3.98410 4.05968 4.19369 4.28813 4.48897 4.51285 4.51909 4.58501 4.64680 4.66283 4.71458 4.78074 4.81733 4.92027 4.95939 4.99352 5.02134 5.09898 5.12862 5.19191 5.25683 5.27047 5.30563 5.41268 5.51462 5.53963 5.65227 5.78399 6.36575 6.39633 6.39761 6.80006 7.02556 7.15538 7.87357 8.38174 9.18141 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.002315 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.737710 B =12094.724535 C =12425.123449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.160 3.840 3 C -0.176 4.176 4 C 0.008 3.992 5 C -0.124 4.124 6 C -0.222 4.222 7 C 0.581 3.419 8 O -0.574 6.574 9 N -0.701 5.701 10 C 0.135 3.865 11 C -0.077 4.077 12 C -0.114 4.114 13 C 0.141 3.859 14 N -0.612 5.612 15 C -0.264 4.264 16 H 0.063 0.937 17 C -0.050 4.050 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.276 1.276 21 H -0.293 1.293 22 H -0.280 1.280 23 C 0.177 3.823 24 C -0.121 4.121 25 C 0.341 3.659 26 O -0.490 6.490 27 N -0.532 5.532 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.184 0.816 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.410 0.590 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.018 0.982 42 H 0.049 0.951 43 H 0.250 0.750 44 H 0.000 1.000 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.964 6.903 14.514 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.023 3.977 3 C -0.196 4.196 4 C 0.000 4.000 5 C -0.180 4.180 6 C -0.229 4.229 7 C 0.367 3.633 8 O -0.454 6.454 9 N -0.351 5.351 10 C 0.012 3.988 11 C -0.096 4.096 12 C -0.153 4.153 13 C 0.016 3.984 14 N -0.335 5.335 15 C -0.394 4.394 16 H 0.080 0.920 17 C -0.245 4.245 18 N -0.579 5.579 19 Si 0.793 3.207 20 H -0.202 1.202 21 H -0.219 1.219 22 H -0.206 1.206 23 C 0.052 3.948 24 C -0.161 4.161 25 C 0.162 3.838 26 O -0.300 6.300 27 N -0.253 5.253 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.201 0.799 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.036 0.964 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.018 0.982 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -23.803 6.186 14.573 28.587 hybrid contribution 1.633 -0.311 -0.440 1.719 sum -22.170 5.875 14.134 26.940 Atomic orbital electron populations 1.20934 0.85620 1.05017 1.04661 1.21892 0.98669 0.86797 0.90324 1.22176 0.92902 1.00815 1.03669 1.20594 0.94678 0.93932 0.90765 1.21011 0.99622 0.92844 1.04529 1.20824 0.93735 0.95202 1.13159 1.17973 0.86668 0.75009 0.83665 1.90791 1.70327 1.51799 1.32486 1.45978 1.07686 1.72988 1.08487 1.21373 0.78663 1.01876 0.96880 1.21140 0.95819 0.98676 0.93930 1.21911 0.99940 0.97050 0.96405 1.21044 0.84070 0.98357 0.94960 1.44320 1.01487 1.28190 1.59535 1.19452 1.00414 0.90641 1.28930 0.91979 1.25771 1.02070 0.97398 0.99311 1.70163 1.24629 1.14150 1.49000 0.85379 0.78722 0.78513 0.78067 1.20156 1.21878 1.20609 1.20580 0.97925 0.87531 0.88812 1.21978 0.94741 1.01243 0.98120 1.19143 0.86801 0.84496 0.93395 1.84656 1.76802 1.33001 1.35565 1.67122 1.08869 1.32066 1.17196 0.88520 0.87375 0.90799 0.79902 0.88357 0.92579 0.87415 0.75352 0.91023 0.92418 0.90310 0.93185 0.90597 0.96420 0.93285 0.94073 0.98201 0.92954 0.90864 0.93169 0.72076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.16 71.23 0.72 -0.08 16 2 C 0.16 2.45 6.78 42.58 0.29 2.74 16 3 C -0.18 -2.13 9.41 22.32 0.21 -1.92 16 4 C 0.01 0.14 5.95 -19.42 -0.12 0.02 16 5 C -0.12 -1.56 9.69 71.24 0.69 -0.87 16 6 C -0.22 -5.02 5.66 -19.91 -0.11 -5.13 16 7 C 0.58 15.36 5.42 86.69 0.47 15.83 16 8 O -0.57 -19.16 17.11 -4.00 -0.07 -19.23 16 9 N -0.70 -16.82 5.27 -466.29 -2.46 -19.27 16 10 C 0.14 3.61 5.06 86.38 0.44 4.05 16 11 C -0.08 -2.29 2.19 -10.77 -0.02 -2.32 16 12 C -0.11 -3.68 5.25 30.67 0.16 -3.52 16 13 C 0.14 5.77 6.52 86.36 0.56 6.34 16 14 N -0.61 -30.79 2.99 -699.07 -2.09 -32.88 16 15 C -0.26 -14.73 9.58 84.03 0.81 -13.93 16 16 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 17 C -0.05 -2.82 4.92 84.86 0.42 -2.41 16 18 N -0.93 -55.40 11.19 21.65 0.24 -55.16 16 19 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 C 0.18 8.44 5.30 86.37 0.46 8.90 16 24 C -0.12 -4.38 5.36 30.67 0.16 -4.22 16 25 C 0.34 8.09 7.77 85.13 0.66 8.75 16 26 O -0.49 -11.54 13.01 -87.21 -1.14 -12.68 16 27 N -0.53 -11.75 10.28 -296.06 -3.04 -14.80 16 28 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.24 8.07 -2.39 -0.02 0.22 16 30 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.18 0.72 8.06 -2.90 -0.02 0.69 16 32 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.98 7.19 -2.39 -0.02 0.96 16 34 H 0.11 0.76 8.10 -2.39 -0.02 0.74 16 35 H 0.41 8.59 7.64 -92.71 -0.71 7.88 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.08 2.04 7.15 -2.39 -0.02 2.02 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.05 2.01 7.93 -2.38 -0.02 1.99 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.05 2.85 6.07 -2.39 -0.01 2.84 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.42 6.69 9.06 -74.06 -0.67 6.02 16 Total: -1.00 -75.38 390.80 -1.12 -76.50 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -0.40 Total: 17.87 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.80 Total: 12.23 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -7.35 Total: -122.11 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.20 Total: -31.91 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.38 -1.12 -76.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330930196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.988 kcal (2) G-P(sol) polarization free energy of solvation -75.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds