Wall clock time and date at job start Tue Mar 31 2020 18:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40188 * 120.37059 * 2 1 4 4 C 1.35343 * 119.95247 * 179.97438 * 3 2 1 5 5 N 1.35763 * 120.70190 * 0.02562 * 4 3 2 6 6 C 1.46501 * 119.62713 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47387 * 270.01856 * 6 5 4 8 8 O 1.21286 * 119.99627 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99998 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99664 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.53038 * 109.45760 * 295.02716 * 11 10 9 13 13 C 1.53189 * 109.31261 * 178.60243 * 12 11 10 14 14 N 1.46931 * 108.76755 * 54.65312 * 13 12 11 15 15 C 1.36934 * 120.62981 * 126.40439 * 14 13 12 16 16 H 1.08002 * 120.00477 * 332.60878 * 15 14 13 17 17 C 1.38810 * 119.99533 * 152.61020 * 15 14 13 18 18 N 1.31628 * 120.00209 * 159.34558 * 17 15 14 19 19 Si 1.86804 * 120.00229 * 339.34035 * 17 15 14 20 20 H 1.48506 * 109.46544 * 92.94812 * 19 17 15 21 21 H 1.48499 * 109.47337 * 212.94329 * 19 17 15 22 22 H 1.48496 * 109.46993 * 332.95008 * 19 17 15 23 23 C 1.46922 * 118.73563 * 306.38235 * 14 13 12 24 24 C 1.53038 * 109.45811 * 174.96974 * 11 10 9 25 25 C 1.34663 * 120.74924 * 359.97438 * 5 4 3 26 26 O 1.22060 * 119.98514 * 179.97438 * 25 5 4 27 27 C 1.36403 * 120.36389 * 180.26751 * 2 1 3 28 28 H 1.08998 * 109.47149 * 89.99612 * 1 2 3 29 29 H 1.09001 * 109.47331 * 209.99664 * 1 2 3 30 30 H 1.09000 * 109.47212 * 329.99404 * 1 2 3 31 31 H 1.08002 * 120.02683 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.65170 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46856 * 30.02196 * 6 5 4 34 34 H 1.09002 * 109.46934 * 150.01330 * 6 5 4 35 35 H 0.96996 * 120.00171 * 359.97438 * 9 7 6 36 36 H 1.09008 * 109.46925 * 299.99991 * 10 9 7 37 37 H 1.08995 * 109.47299 * 59.99826 * 10 9 7 38 38 H 1.09006 * 109.46181 * 54.99416 * 11 10 9 39 39 H 1.09002 * 109.49428 * 298.56582 * 12 11 10 40 40 H 1.09002 * 109.50106 * 58.66044 * 12 11 10 41 41 H 1.08996 * 109.59734 * 294.86385 * 13 12 11 42 42 H 1.09006 * 109.70136 * 174.50363 * 13 12 11 43 43 H 0.96991 * 120.00277 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.59099 * 293.82506 * 23 14 13 45 45 H 1.08998 * 109.70333 * 173.46145 * 23 14 13 46 46 H 1.08996 * 109.50216 * 301.33021 * 24 11 10 47 47 H 1.08995 * 109.49693 * 61.40471 * 24 11 10 48 48 H 1.07996 * 120.35405 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5691 1.1996 0.0005 5 7 4.2538 0.0273 0.0005 6 6 5.7187 0.0441 0.0005 7 6 6.2210 0.0503 -1.4203 8 8 5.4329 0.0420 -2.3421 9 7 7.5460 0.0661 -1.6665 10 6 8.0343 0.0727 -3.0477 11 6 9.5642 0.0901 -3.0477 12 6 10.0591 1.4028 -2.4363 13 6 11.5907 1.4019 -2.4059 14 7 12.0903 1.1425 -3.7631 15 6 12.9891 1.9926 -4.3500 16 1 13.0137 3.0339 -4.0643 17 6 13.8688 1.5160 -5.3123 18 7 14.4360 2.3512 -6.1568 19 14 14.2477 -0.3106 -5.4086 20 1 13.3264 -0.9567 -6.3777 21 1 15.6506 -0.5023 -5.8561 22 1 14.0671 -0.9249 -4.0688 23 6 11.6074 -0.0465 -4.4783 24 6 10.0754 -0.0296 -4.4852 25 6 3.6016 -1.1509 0.0005 26 8 4.2311 -2.1966 0.0001 27 6 2.1965 -1.1769 -0.0055 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6822 2.1486 -0.0004 32 1 4.1103 2.1343 0.0001 33 1 6.0718 0.9380 0.5147 34 1 6.0922 -0.8418 0.5142 35 1 8.1763 0.0738 -0.9292 36 1 7.6814 -0.8213 -3.5621 37 1 7.6605 0.9585 -3.5610 38 1 9.9370 -0.7480 -2.4587 39 1 9.7075 2.2402 -3.0390 40 1 9.6753 1.4986 -1.4205 41 1 11.9425 0.6212 -1.7316 42 1 11.9520 2.3714 -2.0626 43 1 15.0503 2.0182 -6.8295 44 1 11.9605 -0.9455 -3.9730 45 1 11.9774 -0.0343 -5.5035 46 1 9.7034 -0.9534 -4.9280 47 1 9.7232 0.8211 -5.0685 48 1 1.6683 -2.1189 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331313483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:23 Heat of formation + Delta-G solvation = -18.217176 kcal Electronic energy + Delta-G solvation = -28252.192170 eV Core-core repulsion = 24308.093053 eV Total energy + Delta-G solvation = -3944.099117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.79028 -39.74643 -38.15334 -37.29524 -35.67826 -35.13749 -33.00847 -31.34196 -30.76502 -30.39413 -29.76984 -27.92299 -26.36900 -24.03595 -23.85629 -22.88066 -21.98993 -21.32217 -20.79218 -19.47161 -18.00797 -17.84088 -17.69560 -16.79073 -16.34861 -15.88181 -15.62622 -15.56162 -15.09777 -14.58257 -14.40997 -14.30486 -14.11391 -13.98251 -13.67882 -13.62864 -13.29267 -13.11659 -12.89754 -12.78113 -12.55576 -12.30849 -12.11018 -12.05038 -11.96595 -11.82189 -11.44310 -10.87347 -10.69026 -10.56905 -10.52348 -10.23219 -10.16999 -9.93988 -9.89920 -9.67956 -9.45540 -9.21250 -8.64529 -8.27419 -7.00643 -5.97217 -3.33147 0.50250 1.58849 2.13643 2.32021 2.95451 3.30394 3.42362 3.46844 3.49209 4.13533 4.22525 4.34181 4.42342 4.50782 4.62768 4.71199 4.87275 4.87796 4.92309 4.96977 5.05209 5.14232 5.16867 5.19664 5.39442 5.42127 5.61396 5.62607 5.71768 5.73592 5.82286 5.86220 6.01100 6.04393 6.12212 6.16649 6.19123 6.32322 6.35405 6.44226 6.57676 6.61853 6.66039 6.74818 6.91989 7.23372 7.77075 7.93568 7.93849 8.30380 8.91719 9.69823 10.07533 11.18740 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033811 B = 0.001993 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.941897 B =14044.229417 C =14273.370619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 C -0.230 4.230 4 C 0.145 3.855 5 N -0.482 5.482 6 C 0.070 3.930 7 C 0.498 3.502 8 O -0.529 6.529 9 N -0.719 5.719 10 C 0.125 3.875 11 C -0.092 4.092 12 C -0.128 4.128 13 C 0.148 3.852 14 N -0.606 5.606 15 C -0.261 4.261 16 H 0.085 0.915 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.883 3.117 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.271 1.271 23 C 0.126 3.874 24 C -0.126 4.126 25 C 0.522 3.478 26 O -0.552 6.552 27 C -0.248 4.248 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.063 0.937 43 H 0.263 0.737 44 H 0.024 0.976 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.153 -1.720 16.544 30.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 C -0.253 4.253 4 C 0.018 3.982 5 N -0.192 5.192 6 C -0.056 4.056 7 C 0.282 3.718 8 O -0.405 6.405 9 N -0.372 5.372 10 C 0.002 3.998 11 C -0.111 4.111 12 C -0.168 4.168 13 C 0.022 3.978 14 N -0.330 5.330 15 C -0.389 4.389 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.001 3.999 24 C -0.166 4.166 25 C 0.325 3.675 26 O -0.434 6.434 27 C -0.270 4.270 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.179 0.821 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -25.139 -2.367 15.733 29.751 hybrid contribution 0.664 -0.912 0.061 1.130 sum -24.474 -3.279 15.794 29.312 Atomic orbital electron populations 1.20932 0.90331 1.03471 1.03239 1.20213 0.96806 0.92662 0.89129 1.20526 0.92346 0.98960 1.13437 1.21898 0.93650 0.89469 0.93163 1.45028 1.07138 1.07327 1.59733 1.21811 0.79863 1.07430 0.96515 1.20637 0.83056 0.77018 0.91059 1.90762 1.55249 1.48805 1.45726 1.45973 1.06295 1.74825 1.10058 1.21580 0.94583 1.02282 0.81394 1.21316 0.91968 0.99068 0.98699 1.22078 0.98902 0.96793 0.98990 1.20912 0.90852 0.99250 0.86783 1.44346 1.49622 1.27145 1.11844 1.18911 1.09962 0.91192 1.18809 0.89757 1.25287 0.97429 0.97270 0.97636 1.69837 1.32645 1.34443 1.18178 0.86945 0.76368 0.87315 0.77984 1.21614 1.23154 1.19641 1.21322 0.91454 0.89689 0.97454 1.21996 0.98640 1.01386 0.94578 1.17094 0.89382 0.82412 0.78656 1.90960 1.69141 1.30280 1.53067 1.21913 0.92218 0.99596 1.13270 0.90026 0.90820 0.90740 0.83672 0.82107 0.85940 0.85201 0.76279 0.91593 0.91242 0.91051 0.91659 0.93044 0.96112 0.91880 0.92760 0.95766 0.90842 0.92534 0.91336 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.03 36.00 0.36 -0.20 16 2 C 0.02 0.12 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.49 9.71 -39.88 -0.39 -1.87 16 4 C 0.14 1.01 10.28 -16.84 -0.17 0.84 16 5 N -0.48 -4.76 2.07 -121.06 -0.25 -5.01 16 6 C 0.07 0.56 5.81 -5.19 -0.03 0.53 16 7 C 0.50 5.84 7.89 -10.99 -0.09 5.75 16 8 O -0.53 -8.62 16.43 5.55 0.09 -8.53 16 9 N -0.72 -7.46 5.27 -60.29 -0.32 -7.77 16 10 C 0.12 1.59 5.06 -4.04 -0.02 1.57 16 11 C -0.09 -1.27 2.19 -90.58 -0.20 -1.46 16 12 C -0.13 -1.83 5.25 -26.61 -0.14 -1.97 16 13 C 0.15 2.70 6.52 -3.71 -0.02 2.67 16 14 N -0.61 -13.89 2.77 -172.31 -0.48 -14.37 16 15 C -0.26 -7.15 10.04 -15.06 -0.15 -7.30 16 16 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 17 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 18 N -0.91 -27.66 13.97 55.49 0.78 -26.89 16 19 Si 0.88 22.24 24.35 -169.99 -4.14 18.10 16 20 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 21 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 22 H -0.27 -6.70 6.63 56.52 0.37 -6.32 16 23 C 0.13 2.67 4.20 -3.71 -0.02 2.66 16 24 C -0.13 -2.12 5.36 -26.61 -0.14 -2.26 16 25 C 0.52 6.76 7.40 -15.44 -0.11 6.65 16 26 O -0.55 -9.18 16.64 4.86 0.08 -9.10 16 27 C -0.25 -2.58 9.65 -39.38 -0.38 -2.96 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 31 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.16 0.58 8.04 -52.49 -0.42 0.15 16 33 H 0.12 0.44 8.01 -51.93 -0.42 0.02 16 34 H 0.13 1.04 7.39 -51.93 -0.38 0.66 16 35 H 0.40 3.05 7.65 -40.82 -0.31 2.74 16 36 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.56 7.15 -51.93 -0.37 0.19 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.02 0.51 7.08 -51.93 -0.37 0.14 16 45 H 0.07 1.73 4.50 -51.93 -0.23 1.50 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -37.73 383.92 -8.26 -45.99 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.60 Total: -0.90 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.21 Total: 2.69 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.27 Total: -54.04 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.63 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.73 -8.26 -45.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331313483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.769 kcal (2) G-P(sol) polarization free energy of solvation -37.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds