Wall clock time and date at job start Tue Mar 31 2020 18:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40188 * 120.37059 * 2 1 4 4 C 1.35343 * 119.95247 * 179.97438 * 3 2 1 5 5 N 1.35763 * 120.70190 * 0.02562 * 4 3 2 6 6 C 1.46501 * 119.62713 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47387 * 270.01856 * 6 5 4 8 8 O 1.21286 * 119.99627 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99998 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99664 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.53038 * 109.45760 * 295.02716 * 11 10 9 13 13 C 1.53189 * 109.31261 * 178.60243 * 12 11 10 14 14 N 1.46931 * 108.76755 * 54.65312 * 13 12 11 15 15 C 1.36934 * 120.62981 * 126.40439 * 14 13 12 16 16 H 1.08002 * 120.00477 * 332.60878 * 15 14 13 17 17 C 1.38810 * 119.99533 * 152.61020 * 15 14 13 18 18 N 1.31628 * 120.00209 * 159.34558 * 17 15 14 19 19 Si 1.86804 * 120.00229 * 339.34035 * 17 15 14 20 20 H 1.48506 * 109.46544 * 92.94812 * 19 17 15 21 21 H 1.48499 * 109.47337 * 212.94329 * 19 17 15 22 22 H 1.48496 * 109.46993 * 332.95008 * 19 17 15 23 23 C 1.46922 * 118.73563 * 306.38235 * 14 13 12 24 24 C 1.53038 * 109.45811 * 174.96974 * 11 10 9 25 25 C 1.34663 * 120.74924 * 359.97438 * 5 4 3 26 26 O 1.22060 * 119.98514 * 179.97438 * 25 5 4 27 27 C 1.36403 * 120.36389 * 180.26751 * 2 1 3 28 28 H 1.08998 * 109.47149 * 89.99612 * 1 2 3 29 29 H 1.09001 * 109.47331 * 209.99664 * 1 2 3 30 30 H 1.09000 * 109.47212 * 329.99404 * 1 2 3 31 31 H 1.08002 * 120.02683 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.65170 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46856 * 30.02196 * 6 5 4 34 34 H 1.09002 * 109.46934 * 150.01330 * 6 5 4 35 35 H 0.96996 * 120.00171 * 359.97438 * 9 7 6 36 36 H 1.09008 * 109.46925 * 299.99991 * 10 9 7 37 37 H 1.08995 * 109.47299 * 59.99826 * 10 9 7 38 38 H 1.09006 * 109.46181 * 54.99416 * 11 10 9 39 39 H 1.09002 * 109.49428 * 298.56582 * 12 11 10 40 40 H 1.09002 * 109.50106 * 58.66044 * 12 11 10 41 41 H 1.08996 * 109.59734 * 294.86385 * 13 12 11 42 42 H 1.09006 * 109.70136 * 174.50363 * 13 12 11 43 43 H 0.96991 * 120.00277 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.59099 * 293.82506 * 23 14 13 45 45 H 1.08998 * 109.70333 * 173.46145 * 23 14 13 46 46 H 1.08996 * 109.50216 * 301.33021 * 24 11 10 47 47 H 1.08995 * 109.49693 * 61.40471 * 24 11 10 48 48 H 1.07996 * 120.35405 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5691 1.1996 0.0005 5 7 4.2538 0.0273 0.0005 6 6 5.7187 0.0441 0.0005 7 6 6.2210 0.0503 -1.4203 8 8 5.4329 0.0420 -2.3421 9 7 7.5460 0.0661 -1.6665 10 6 8.0343 0.0727 -3.0477 11 6 9.5642 0.0901 -3.0477 12 6 10.0591 1.4028 -2.4363 13 6 11.5907 1.4019 -2.4059 14 7 12.0903 1.1425 -3.7631 15 6 12.9891 1.9926 -4.3500 16 1 13.0137 3.0339 -4.0643 17 6 13.8688 1.5160 -5.3123 18 7 14.4360 2.3512 -6.1568 19 14 14.2477 -0.3106 -5.4086 20 1 13.3264 -0.9567 -6.3777 21 1 15.6506 -0.5023 -5.8561 22 1 14.0671 -0.9249 -4.0688 23 6 11.6074 -0.0465 -4.4783 24 6 10.0754 -0.0296 -4.4852 25 6 3.6016 -1.1509 0.0005 26 8 4.2311 -2.1966 0.0001 27 6 2.1965 -1.1769 -0.0055 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6822 2.1486 -0.0004 32 1 4.1103 2.1343 0.0001 33 1 6.0718 0.9380 0.5147 34 1 6.0922 -0.8418 0.5142 35 1 8.1763 0.0738 -0.9292 36 1 7.6814 -0.8213 -3.5621 37 1 7.6605 0.9585 -3.5610 38 1 9.9370 -0.7480 -2.4587 39 1 9.7075 2.2402 -3.0390 40 1 9.6753 1.4986 -1.4205 41 1 11.9425 0.6212 -1.7316 42 1 11.9520 2.3714 -2.0626 43 1 15.0503 2.0182 -6.8295 44 1 11.9605 -0.9455 -3.9730 45 1 11.9774 -0.0343 -5.5035 46 1 9.7034 -0.9534 -4.9280 47 1 9.7232 0.8211 -5.0685 48 1 1.6683 -2.1189 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331313483.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:20 Heat of formation + Delta-G solvation = -45.239033 kcal Electronic energy + Delta-G solvation = -28253.363926 eV Core-core repulsion = 24308.093053 eV Total energy + Delta-G solvation = -3945.270873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.51784 -40.71758 -39.52216 -38.10470 -36.64339 -36.14573 -34.58227 -32.98871 -31.89185 -31.42770 -30.50312 -28.92416 -27.46040 -25.45392 -24.65467 -24.29234 -22.96088 -22.56640 -21.69371 -20.85446 -18.94188 -18.66147 -18.52671 -18.37894 -17.26894 -17.04177 -16.71151 -16.55887 -16.25055 -15.92368 -15.42278 -15.19523 -15.15362 -15.09800 -14.99840 -14.68873 -14.43695 -14.17906 -13.98493 -13.80346 -13.54390 -13.42893 -13.30482 -13.06850 -12.91187 -12.84117 -12.55774 -12.45858 -12.25541 -12.12456 -11.75718 -11.60444 -11.41180 -11.22006 -11.20850 -11.09361 -10.69765 -10.56292 -10.17813 -8.98788 -8.91677 -8.16654 -5.47331 -0.12171 0.91696 1.29574 1.40270 1.44495 1.47992 1.49309 2.15194 2.41348 2.69926 3.06063 3.37705 3.59274 3.67449 3.74164 3.77382 3.85375 3.89715 3.94582 4.10310 4.18880 4.34408 4.37745 4.40089 4.42214 4.54245 4.61979 4.69970 4.75972 4.79368 4.82747 4.88318 4.90591 5.01236 5.09314 5.10748 5.15315 5.21041 5.24475 5.27245 5.32567 5.49490 5.59505 5.65959 5.87984 6.05182 6.13225 6.42356 6.93743 6.96266 7.11258 7.64467 8.04655 9.03293 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.033811 B = 0.001993 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.941897 B =14044.229417 C =14273.370619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 C -0.232 4.232 4 C 0.140 3.860 5 N -0.484 5.484 6 C 0.071 3.929 7 C 0.497 3.503 8 O -0.581 6.581 9 N -0.706 5.706 10 C 0.137 3.863 11 C -0.080 4.080 12 C -0.116 4.116 13 C 0.140 3.860 14 N -0.622 5.622 15 C -0.245 4.245 16 H 0.052 0.948 17 C -0.039 4.039 18 N -0.958 5.958 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.313 1.313 22 H -0.259 1.259 23 C 0.120 3.880 24 C -0.122 4.122 25 C 0.502 3.498 26 O -0.612 6.612 27 C -0.293 4.293 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.182 0.818 32 H 0.203 0.797 33 H 0.179 0.821 34 H 0.130 0.870 35 H 0.420 0.580 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.055 0.945 43 H 0.260 0.740 44 H 0.035 0.965 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.053 0.947 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.239 -1.265 19.031 33.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.029 3.971 3 C -0.254 4.254 4 C 0.015 3.985 5 N -0.192 5.192 6 C -0.054 4.054 7 C 0.283 3.717 8 O -0.461 6.461 9 N -0.359 5.359 10 C 0.013 3.987 11 C -0.099 4.099 12 C -0.155 4.155 13 C 0.015 3.985 14 N -0.346 5.346 15 C -0.375 4.375 16 H 0.070 0.930 17 C -0.233 4.233 18 N -0.605 5.605 19 Si 0.776 3.224 20 H -0.205 1.205 21 H -0.242 1.242 22 H -0.183 1.183 23 C -0.005 4.005 24 C -0.161 4.161 25 C 0.308 3.692 26 O -0.500 6.500 27 C -0.315 4.315 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.199 0.801 32 H 0.220 0.780 33 H 0.196 0.804 34 H 0.148 0.852 35 H 0.258 0.742 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.115 0.885 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.253 -1.895 18.290 32.877 hybrid contribution 1.210 -0.883 -0.668 1.640 sum -26.043 -2.778 17.623 31.568 Atomic orbital electron populations 1.21040 0.88100 1.04865 1.03996 1.20639 0.98481 0.92153 0.85857 1.21061 0.92560 0.99767 1.12019 1.22701 0.94398 0.89737 0.91708 1.45079 1.08050 1.07393 1.58726 1.22055 0.78980 1.10095 0.94229 1.21253 0.82800 0.75612 0.92050 1.90745 1.56521 1.51187 1.47598 1.45796 1.06454 1.74058 1.09611 1.21250 0.93474 1.01350 0.82670 1.21181 0.92548 0.99422 0.96720 1.21953 0.95730 0.96374 1.01437 1.21168 0.93415 0.99422 0.84458 1.44513 1.49169 1.27005 1.13955 1.18881 1.10034 0.90701 1.17886 0.93008 1.25920 0.98098 1.01342 0.97942 1.69971 1.34412 1.36471 1.19641 0.85911 0.75467 0.82434 0.78590 1.20505 1.24208 1.18320 1.21362 0.94240 0.89136 0.95715 1.21888 0.95464 1.01878 0.96897 1.17491 0.90276 0.82721 0.78729 1.90899 1.70225 1.32246 1.56616 1.21903 0.91697 1.00756 1.17131 0.89329 0.90520 0.88322 0.80119 0.77976 0.80375 0.85243 0.74231 0.92693 0.92271 0.89414 0.93249 0.88525 0.94245 0.92670 0.93084 0.94736 0.93719 0.90548 0.92787 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.03 71.24 0.71 -0.12 16 2 C 0.03 0.44 5.89 -19.82 -0.12 0.32 16 3 C -0.23 -2.18 9.71 22.08 0.21 -1.97 16 4 C 0.14 1.46 10.28 83.42 0.86 2.32 16 5 N -0.48 -8.65 2.07 -655.06 -1.36 -10.01 16 6 C 0.07 0.94 5.81 85.63 0.50 1.44 16 7 C 0.50 10.47 7.89 87.66 0.69 11.16 16 8 O -0.58 -18.34 16.43 -3.05 -0.05 -18.39 16 9 N -0.71 -12.26 5.27 -463.05 -2.44 -14.70 16 10 C 0.14 3.13 5.06 86.38 0.44 3.57 16 11 C -0.08 -1.95 2.19 -10.77 -0.02 -1.97 16 12 C -0.12 -2.92 5.25 30.67 0.16 -2.76 16 13 C 0.14 4.76 6.52 86.36 0.56 5.33 16 14 N -0.62 -27.97 2.77 -699.08 -1.94 -29.91 16 15 C -0.25 -13.71 10.04 84.03 0.84 -12.87 16 16 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 17 C -0.04 -2.25 5.23 84.86 0.44 -1.81 16 18 N -0.96 -60.44 13.97 21.65 0.30 -60.14 16 19 Si 0.95 46.59 24.35 68.60 1.67 48.26 16 20 H -0.28 -13.06 6.62 99.48 0.66 -12.40 16 21 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 22 H -0.26 -12.04 6.63 99.48 0.66 -11.38 16 23 C 0.12 4.91 4.20 86.37 0.36 5.27 16 24 C -0.12 -3.86 5.36 30.68 0.16 -3.70 16 25 C 0.50 13.26 7.40 84.82 0.63 13.89 16 26 O -0.61 -21.44 16.64 -5.51 -0.09 -21.53 16 27 C -0.29 -6.27 9.65 22.40 0.22 -6.05 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.50 8.09 -2.39 -0.02 0.48 16 30 H 0.10 0.22 8.10 -2.39 -0.02 0.20 16 31 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 32 H 0.20 0.31 8.04 -2.91 -0.02 0.29 16 33 H 0.18 0.27 8.01 -2.39 -0.02 0.25 16 34 H 0.13 1.82 7.39 -2.39 -0.02 1.80 16 35 H 0.42 4.37 7.65 -92.71 -0.71 3.66 16 36 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.60 7.15 -2.39 -0.02 1.58 16 41 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.94 7.93 -2.38 -0.02 1.93 16 43 H 0.26 15.65 8.31 -92.72 -0.77 14.88 16 44 H 0.03 1.35 7.08 -2.39 -0.02 1.33 16 45 H 0.04 2.07 4.50 -2.39 -0.01 2.06 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -89.31 383.92 2.91 -86.40 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.16 Total: 7.96 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 6.66 Total: 12.05 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -5.43 Total: -114.76 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.14 Total: -39.92 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.67 Total: 48.26 kcal Total: -89.31 2.91 -86.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331313483.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.162 kcal (2) G-P(sol) polarization free energy of solvation -89.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds