Wall clock time and date at job start Tue Mar 31 2020 17:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38830 * 120.75361 * 2 1 4 4 C 1.38100 * 119.31927 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.57305 * 180.02562 * 4 3 2 6 6 N 1.31909 * 120.85003 * 359.74196 * 4 3 2 7 7 C 1.32377 * 121.63741 * 0.52977 * 6 4 3 8 8 N 1.39245 * 119.70343 * 179.74999 * 7 6 4 9 9 C 1.34784 * 119.99778 * 4.79342 * 8 7 6 10 10 O 1.21351 * 120.00111 * 354.91345 * 9 8 7 11 11 C 1.49370 * 119.99595 * 174.64308 * 9 8 7 12 12 O 1.21358 * 120.00372 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99601 * 179.97438 * 11 9 8 14 14 C 1.46501 * 120.00063 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.47221 * 180.02562 * 14 13 11 16 16 C 1.53008 * 109.47072 * 299.99696 * 15 14 13 17 17 C 1.52997 * 109.47437 * 59.99999 * 15 14 13 18 18 C 1.53006 * 109.47002 * 180.02562 * 15 14 13 19 19 C 1.50696 * 109.47005 * 180.02562 * 18 15 14 20 20 H 1.08008 * 119.99900 * 359.97438 * 19 18 15 21 21 C 1.37880 * 120.00210 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99741 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00249 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47162 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47257 * 119.99983 * 23 21 19 26 26 H 1.48499 * 109.47213 * 240.00120 * 23 21 19 27 27 C 1.38363 * 120.74980 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47490 * 269.97525 * 1 2 3 29 29 H 1.08998 * 109.47304 * 29.97990 * 1 2 3 30 30 H 1.08999 * 109.47056 * 149.97820 * 1 2 3 31 31 H 1.08010 * 120.34052 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47290 * 89.99837 * 5 4 3 33 33 H 1.08997 * 109.47137 * 210.00055 * 5 4 3 34 34 H 1.09002 * 109.47188 * 329.99857 * 5 4 3 35 35 H 0.97002 * 120.00473 * 184.79433 * 8 7 6 36 36 H 0.97000 * 120.00458 * 359.97438 * 13 11 9 37 37 H 1.09000 * 109.46748 * 299.99769 * 14 13 11 38 38 H 1.08995 * 109.47396 * 59.99811 * 14 13 11 39 39 H 1.09002 * 109.46393 * 60.00054 * 16 15 14 40 40 H 1.08994 * 109.47103 * 180.02562 * 16 15 14 41 41 H 1.08997 * 109.46822 * 300.00482 * 16 15 14 42 42 H 1.09000 * 109.47438 * 59.99797 * 17 15 14 43 43 H 1.08994 * 109.47371 * 179.97438 * 17 15 14 44 44 H 1.09006 * 109.47029 * 299.99682 * 17 15 14 45 45 H 1.09000 * 109.46727 * 299.99501 * 18 15 14 46 46 H 1.08990 * 109.47246 * 59.99914 * 18 15 14 47 47 H 0.97000 * 119.99841 * 180.02562 * 22 21 19 48 48 H 1.07995 * 120.45368 * 359.95411 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1931 0.0000 4 6 3.5975 1.1585 -0.0005 5 6 4.3738 2.4502 0.0000 6 7 4.2453 0.0095 0.0040 7 6 3.6047 -1.1489 -0.0011 8 7 4.3291 -2.3381 -0.0012 9 6 5.6727 -2.3086 0.1014 10 8 6.2581 -1.2456 0.1009 11 6 6.4406 -3.5841 0.2218 12 8 5.8548 -4.6469 0.2277 13 7 7.7842 -3.5547 0.3239 14 6 8.5374 -4.8056 0.4426 15 6 10.0318 -4.4936 0.5433 16 6 10.4821 -3.7443 -0.7125 17 6 10.2895 -3.6243 1.7757 18 6 10.8184 -5.8001 0.6666 19 6 12.2903 -5.4927 0.7664 20 1 12.6307 -4.4679 0.7437 21 6 13.2025 -6.5196 0.8867 22 7 12.7880 -7.7674 0.9149 23 14 15.0271 -6.1386 1.0097 24 1 15.2307 -4.6687 0.9538 25 1 15.5570 -6.6638 2.2936 26 1 15.7441 -6.7805 -0.1213 27 6 2.2144 -1.1891 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6948 2.1386 0.0004 32 1 4.5613 2.7609 1.0278 33 1 5.3235 2.3034 -0.5142 34 1 3.7980 3.2204 -0.5131 35 1 3.8669 -3.1877 -0.0752 36 1 8.2525 -2.7053 0.3189 37 1 8.2169 -5.3391 1.3375 38 1 8.3535 -5.4251 -0.4351 39 1 9.9217 -2.8136 -0.8007 40 1 11.5468 -3.5224 -0.6410 41 1 10.2985 -4.3637 -1.5904 42 1 9.9687 -4.1580 2.6703 43 1 11.3541 -3.4024 1.8477 44 1 9.7291 -2.6935 1.6874 45 1 10.4978 -6.3342 1.5610 46 1 10.6349 -6.4190 -0.2116 47 1 13.4296 -8.4898 0.9999 48 1 1.6942 -2.1355 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358000367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:46 Heat of formation + Delta-G solvation = -43.259141 kcal Electronic energy + Delta-G solvation = -27919.495532 eV Core-core repulsion = 23974.310514 eV Total energy + Delta-G solvation = -3945.185018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.33361 -40.19313 -38.61061 -37.19067 -35.64690 -34.45974 -33.67615 -32.10726 -31.68701 -28.44361 -27.77642 -27.35068 -26.78835 -26.51977 -24.92483 -23.07210 -22.36490 -21.57307 -20.14002 -19.18581 -17.94741 -17.46589 -16.51735 -16.37590 -16.28058 -16.16243 -16.08912 -15.13031 -15.03866 -14.49882 -14.34475 -14.18226 -13.87681 -13.70353 -13.48500 -13.15310 -13.14456 -12.92035 -12.80272 -12.69232 -12.50730 -12.19104 -12.09971 -12.08099 -11.66763 -11.19577 -11.03291 -10.86397 -10.83988 -10.65908 -10.45594 -10.26390 -10.05894 -9.91766 -9.75789 -9.37174 -9.14481 -8.98586 -8.94001 -8.56569 -8.37587 -6.01593 -4.02661 0.65735 0.94201 1.54832 2.11621 3.13349 3.30014 3.36884 3.38520 3.41444 3.56887 4.05456 4.24777 4.40982 4.45474 4.61381 4.73230 4.78068 5.02592 5.09296 5.22224 5.25296 5.34141 5.36346 5.39482 5.44933 5.55065 5.57624 5.71720 5.75989 5.89365 5.99430 6.13324 6.14507 6.18416 6.34723 6.35176 6.41160 6.62542 6.66246 6.70580 7.03135 7.05610 7.08094 7.26760 7.60053 7.61991 7.72704 7.90115 7.96872 8.00908 8.38870 9.02140 9.60682 11.09865 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028838 B = 0.001982 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.700005 B =14125.654223 C =14881.356978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.013 4.013 3 C -0.206 4.206 4 C 0.164 3.836 5 C -0.104 4.104 6 N -0.482 5.482 7 C 0.370 3.630 8 N -0.640 5.640 9 C 0.500 3.500 10 O -0.447 6.447 11 C 0.502 3.498 12 O -0.526 6.526 13 N -0.683 5.683 14 C 0.124 3.876 15 C -0.073 4.073 16 C -0.130 4.130 17 C -0.130 4.130 18 C 0.036 3.964 19 C -0.511 4.511 20 H 0.061 0.939 21 C 0.055 3.945 22 N -0.894 5.894 23 Si 0.889 3.111 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.212 4.212 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.429 0.571 36 H 0.412 0.588 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.259 0.741 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.520 17.525 -2.155 30.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.021 4.021 3 C -0.227 4.227 4 C 0.025 3.975 5 C -0.161 4.161 6 N -0.198 5.198 7 C 0.139 3.861 8 N -0.288 5.288 9 C 0.280 3.720 10 O -0.314 6.314 11 C 0.281 3.719 12 O -0.404 6.404 13 N -0.336 5.336 14 C 0.002 3.998 15 C -0.074 4.074 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.001 4.001 19 C -0.549 4.549 20 H 0.079 0.921 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.236 4.236 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.268 0.732 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.069 0.931 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.402 17.281 -2.111 29.167 hybrid contribution 0.114 -0.151 0.061 0.199 sum -23.287 17.131 -2.050 28.982 Atomic orbital electron populations 1.20826 0.89890 1.03458 1.03045 1.20064 0.96629 0.92121 0.93279 1.21767 0.94670 0.98696 1.07601 1.21174 0.90920 0.93275 0.92094 1.20733 1.00605 0.91488 1.03311 1.67451 1.39645 0.96552 1.16137 1.18344 0.87753 0.86064 0.93984 1.43235 1.06845 1.08133 1.70604 1.20609 0.82690 0.90476 0.78210 1.90863 1.68041 1.30951 1.41566 1.19831 0.83976 0.88630 0.79429 1.90767 1.69175 1.30955 1.49461 1.46065 1.05173 1.12483 1.69879 1.21872 0.91830 0.83769 1.02292 1.20946 0.90987 1.00003 0.95423 1.21796 1.02118 0.97819 0.97020 1.21793 1.02428 0.97288 0.97243 1.19098 0.94146 0.89370 0.97485 1.21219 0.91207 0.92788 1.49683 0.92119 1.25018 0.98833 0.95147 0.95560 1.69972 1.34136 0.98614 1.50664 0.86577 0.85708 0.78399 0.77551 1.19764 1.21141 1.21143 1.21319 0.92190 0.99773 1.10286 0.90322 0.90842 0.90876 0.84774 0.90196 0.90044 0.90637 0.73198 0.75054 0.90999 0.90976 0.95014 0.91187 0.93249 0.93257 0.91185 0.95014 0.96241 0.96234 0.93090 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.06 36.00 0.36 -0.14 16 2 C -0.01 -0.10 5.91 -104.36 -0.62 -0.72 16 3 C -0.21 -1.65 9.44 -39.41 -0.37 -2.02 16 4 C 0.16 1.70 6.78 -82.61 -0.56 1.14 16 5 C -0.10 -0.81 10.17 36.01 0.37 -0.45 16 6 N -0.48 -6.41 7.80 -8.62 -0.07 -6.48 16 7 C 0.37 4.35 7.42 -154.82 -1.15 3.21 16 8 N -0.64 -7.45 5.37 -11.86 -0.06 -7.51 16 9 C 0.50 7.08 7.84 -11.62 -0.09 6.99 16 10 O -0.45 -7.27 14.74 5.50 0.08 -7.18 16 11 C 0.50 7.58 7.89 -11.62 -0.09 7.48 16 12 O -0.53 -8.79 16.48 5.49 0.09 -8.70 16 13 N -0.68 -10.39 4.95 -60.76 -0.30 -10.69 16 14 C 0.12 2.14 4.56 -4.04 -0.02 2.12 16 15 C -0.07 -1.38 0.54 -154.50 -0.08 -1.46 16 16 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 17 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 18 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 19 C -0.51 -13.47 7.65 -34.44 -0.26 -13.73 16 20 H 0.06 1.55 5.68 -52.48 -0.30 1.25 16 21 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 22 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 23 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.21 -1.85 9.64 -39.22 -0.38 -2.22 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 30 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 31 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.43 3.96 8.18 -40.82 -0.33 3.63 16 36 H 0.41 5.96 5.63 -40.82 -0.23 5.73 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 40 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 44 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -32.70 395.41 -8.40 -41.10 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.31 Total: 4.45 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.30 Total: -50.14 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.17 Total: -15.88 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.70 -8.40 -41.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358000367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.158 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds