Wall clock time and date at job start Tue Mar 31 2020 18:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39804 * 120.08131 * 2 1 4 4 C 1.36029 * 119.07534 * 179.72753 * 3 2 1 5 5 C 1.50701 * 120.40356 * 180.27232 * 4 3 2 6 6 N 1.35858 * 119.19123 * 0.49834 * 4 3 2 7 7 C 1.46504 * 119.93618 * 179.77608 * 6 4 3 8 8 C 1.50710 * 109.46880 * 269.30214 * 7 6 4 9 9 O 1.21276 * 119.99726 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99942 * 179.72358 * 8 7 6 11 11 C 1.46930 * 120.63014 * 359.97438 * 10 8 7 12 12 C 1.53623 * 108.54125 * 126.36530 * 11 10 8 13 13 C 1.53042 * 109.24008 * 54.86121 * 12 11 10 14 14 C 1.53001 * 109.45979 * 178.48971 * 13 12 11 15 15 C 1.50702 * 109.46956 * 295.06306 * 14 13 12 16 16 H 1.08003 * 120.00036 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99756 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00339 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99727 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47151 * 59.99873 * 19 17 15 21 21 H 1.48503 * 109.47185 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47007 * 299.99858 * 19 17 15 23 23 C 1.53042 * 109.53509 * 298.50782 * 13 12 11 24 24 C 1.46917 * 120.63101 * 180.27691 * 10 8 7 25 25 C 1.34618 * 120.13166 * 359.49610 * 6 4 3 26 26 O 1.21954 * 119.53018 * 180.23241 * 25 6 4 27 27 N 1.31752 * 120.08356 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46819 * 300.02329 * 1 2 3 30 30 H 1.09000 * 109.46897 * 60.02148 * 1 2 3 31 31 H 1.08001 * 120.46508 * 359.97438 * 3 2 1 32 32 H 1.09008 * 109.47290 * 235.85168 * 5 4 3 33 33 H 1.08998 * 109.47090 * 355.84678 * 5 4 3 34 34 H 1.08998 * 109.47300 * 115.84884 * 5 4 3 35 35 H 1.09005 * 109.47215 * 149.30947 * 7 6 4 36 36 H 1.08995 * 109.47335 * 29.30455 * 7 6 4 37 37 H 1.08994 * 109.58490 * 246.20379 * 11 10 8 38 38 H 1.09006 * 109.58529 * 6.62644 * 11 10 8 39 39 H 1.09000 * 109.63849 * 294.86915 * 12 11 10 40 40 H 1.08998 * 109.45706 * 174.73529 * 12 11 10 41 41 H 1.08997 * 109.45312 * 58.51972 * 13 12 11 42 42 H 1.08996 * 109.47102 * 55.06765 * 14 13 12 43 43 H 1.09001 * 109.47015 * 175.06522 * 14 13 12 44 44 H 0.97006 * 120.00061 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.49874 * 301.41521 * 23 13 12 46 46 H 1.09004 * 109.52377 * 181.33334 * 23 13 12 47 47 H 1.09006 * 109.58793 * 353.37494 * 24 10 8 48 48 H 1.09003 * 109.58856 * 113.65520 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2078 1.2097 0.0000 4 6 3.5679 1.1859 0.0057 5 6 4.3533 2.4720 0.0120 6 7 4.2096 -0.0116 0.0008 7 6 5.6740 -0.0563 0.0018 8 6 6.1767 -0.0826 -1.4187 9 8 5.3893 -0.0652 -2.3409 10 7 7.5014 -0.1193 -1.6642 11 6 8.4677 -0.1336 -0.5574 12 6 9.4088 -1.3331 -0.7460 13 6 10.0462 -1.2605 -2.1354 14 6 11.0133 -2.4325 -2.3144 15 6 12.1563 -2.2936 -1.3421 16 1 12.1893 -1.4537 -0.6639 17 6 13.1597 -3.2388 -1.3182 18 7 13.1192 -4.2619 -2.1436 19 14 14.5761 -3.0671 -0.1124 20 1 14.0478 -3.0696 1.2754 21 1 15.5149 -4.2045 -0.2862 22 1 15.2913 -1.7909 -0.3675 23 6 8.9533 -1.3335 -3.2043 24 6 8.0069 -0.1392 -3.0435 25 6 3.5026 -1.1572 0.0008 26 8 4.0899 -2.2260 0.0008 27 7 2.1675 -1.1400 0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 1.6768 2.1502 -0.0004 32 1 5.0386 2.4836 -0.8356 33 1 3.6682 3.3165 -0.0633 34 1 4.9211 2.5465 0.9394 35 1 6.0098 -0.9531 0.5227 36 1 6.0641 0.8260 0.5091 37 1 9.0443 0.7913 -0.5638 38 1 7.9369 -0.2292 0.3899 39 1 8.8434 -2.2604 -0.6531 40 1 10.1894 -1.3052 0.0142 41 1 10.5907 -0.3217 -2.2364 42 1 10.4881 -3.3689 -2.1265 43 1 11.4008 -2.4314 -3.3332 44 1 13.8254 -4.9267 -2.1270 45 1 8.3922 -2.2607 -3.0882 46 1 9.4093 -1.3056 -4.1940 47 1 7.1720 -0.2384 -3.7373 48 1 8.5446 0.7864 -3.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517744116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:57 Heat of formation + Delta-G solvation = -35.830234 kcal Electronic energy + Delta-G solvation = -29123.895334 eV Core-core repulsion = 25179.032458 eV Total energy + Delta-G solvation = -3944.862877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.15906 -40.05026 -37.60345 -37.49844 -36.26505 -34.14937 -32.64029 -32.25310 -31.25013 -30.60037 -29.09738 -28.13983 -27.08142 -24.61192 -23.35957 -23.01553 -22.42887 -21.71221 -20.08473 -18.94023 -18.70852 -17.85184 -17.31506 -16.34185 -16.28594 -16.09479 -15.52163 -15.42377 -14.57622 -14.44536 -14.17360 -14.10823 -13.95995 -13.77518 -13.73159 -13.61085 -13.26813 -13.20206 -12.92290 -12.82131 -12.50107 -12.40338 -12.28459 -11.87700 -11.70341 -11.23863 -11.06753 -11.05365 -10.92258 -10.86021 -10.73530 -10.52143 -10.20999 -9.94282 -9.79963 -9.69083 -9.34402 -9.02693 -8.64936 -8.52296 -8.37756 -6.02075 -4.04827 0.34779 1.43399 2.02567 2.39820 2.93721 3.29645 3.35428 3.36063 3.60092 3.74313 3.86931 4.19284 4.26219 4.35769 4.42425 4.70671 4.79711 4.82947 4.86728 4.93288 5.08732 5.15030 5.16836 5.24477 5.27097 5.30872 5.36784 5.42321 5.51653 5.53849 5.61848 5.66237 5.88042 5.95415 5.98914 6.23192 6.26027 6.30185 6.44925 6.56851 6.87427 6.93418 7.05124 7.31544 7.63288 7.65022 7.78021 7.96937 7.97932 8.03519 8.38249 9.01334 9.59025 11.09079 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.002406 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.153311 B =11635.443603 C =11784.664997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.270 3.730 3 C -0.296 4.296 4 C 0.223 3.777 5 C -0.133 4.133 6 N -0.497 5.497 7 C 0.069 3.931 8 C 0.504 3.496 9 O -0.538 6.538 10 N -0.598 5.598 11 C 0.100 3.900 12 C -0.121 4.121 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.131 4.131 24 C 0.114 3.886 25 C 0.637 3.363 26 O -0.525 6.525 27 N -0.550 5.550 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.261 0.739 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.431 18.913 6.416 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 C -0.322 4.322 4 C 0.105 3.895 5 C -0.190 4.190 6 N -0.213 5.213 7 C -0.057 4.057 8 C 0.290 3.710 9 O -0.415 6.415 10 N -0.331 5.331 11 C -0.023 4.023 12 C -0.159 4.159 13 C -0.098 4.098 14 C -0.010 4.010 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.169 4.169 24 C -0.008 4.008 25 C 0.340 3.660 26 O -0.399 6.399 27 N -0.285 5.285 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.174 0.826 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.466 17.035 5.867 28.025 hybrid contribution 1.460 0.689 0.624 1.731 sum -20.006 17.723 6.491 27.504 Atomic orbital electron populations 1.20946 0.87620 1.05115 1.03680 1.22196 0.97795 0.88235 0.80920 1.21193 0.91771 1.00656 1.18602 1.21134 0.93474 0.87686 0.87255 1.21212 1.01238 0.92218 1.04289 1.46114 1.08387 1.07357 1.59402 1.21915 0.78888 1.07539 0.97379 1.20435 0.82774 0.77166 0.90645 1.90721 1.54885 1.50322 1.45586 1.48141 1.04708 1.71669 1.08627 1.22135 0.91301 1.00828 0.88007 1.22000 0.97946 0.96009 0.99920 1.21188 0.95054 1.01603 0.91989 1.19121 0.92784 0.91983 0.97078 1.21172 1.06632 1.08494 1.19370 0.92661 1.25031 0.98214 0.95408 0.95827 1.69951 1.33785 1.12273 1.37300 0.86697 0.82329 0.77527 0.81655 1.20283 1.21355 1.20312 1.22049 0.97031 0.97220 1.00572 1.21724 0.98148 0.99234 0.81704 1.18142 0.85280 0.83235 0.79375 1.91025 1.68709 1.27363 1.52821 1.69819 1.05329 1.28046 1.25262 0.89621 0.89104 0.89076 0.82590 0.89182 0.88219 0.88891 0.84797 0.86037 0.90823 0.90755 0.91946 0.89418 0.92256 0.96576 0.96548 0.92931 0.91923 0.90932 0.89699 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.19 36.01 0.37 -0.28 16 2 C 0.27 2.69 6.84 -82.04 -0.56 2.13 16 3 C -0.30 -2.25 9.41 -39.79 -0.37 -2.62 16 4 C 0.22 1.95 6.68 -81.60 -0.55 1.41 16 5 C -0.13 -0.59 8.72 36.01 0.31 -0.28 16 6 N -0.50 -6.28 2.08 -118.40 -0.25 -6.53 16 7 C 0.07 0.78 3.71 -5.19 -0.02 0.76 16 8 C 0.50 7.29 7.62 -10.98 -0.08 7.21 16 9 O -0.54 -9.73 15.84 5.56 0.09 -9.64 16 10 N -0.60 -8.24 2.97 -172.48 -0.51 -8.75 16 11 C 0.10 1.20 6.37 -3.48 -0.02 1.18 16 12 C -0.12 -2.00 5.21 -26.39 -0.14 -2.14 16 13 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 14 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 15 C -0.52 -13.87 8.39 -34.44 -0.29 -14.16 16 16 H 0.06 1.40 7.06 -52.48 -0.37 1.03 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 19 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.13 -2.20 5.36 -26.59 -0.14 -2.34 16 24 C 0.11 1.64 6.43 -3.70 -0.02 1.62 16 25 C 0.64 10.78 8.34 -88.18 -0.74 10.05 16 26 O -0.53 -11.05 16.74 4.96 0.08 -10.96 16 27 N -0.55 -8.33 10.39 -12.80 -0.13 -8.47 16 28 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.16 0.56 7.96 -52.49 -0.42 0.14 16 32 H 0.09 0.52 7.88 -51.92 -0.41 0.11 16 33 H 0.10 0.21 7.89 -51.93 -0.41 -0.20 16 34 H 0.09 0.24 7.67 -51.93 -0.40 -0.16 16 35 H 0.13 1.62 6.97 -51.93 -0.36 1.26 16 36 H 0.12 0.79 6.39 -51.93 -0.33 0.46 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.69 5.94 -51.93 -0.31 0.39 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.08 1.31 7.01 -51.93 -0.36 0.94 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -38.82 386.92 -9.35 -48.17 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -7.51 Total: -2.76 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -2.66 Total: 2.88 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.15 Total: -49.60 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.17 Total: -20.61 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.82 -9.35 -48.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517744116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.340 kcal (2) G-P(sol) polarization free energy of solvation -38.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds