Wall clock time and date at job start Tue Mar 31 2020 18:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39804 * 120.08131 * 2 1 4 4 C 1.36029 * 119.07534 * 179.72753 * 3 2 1 5 5 C 1.50701 * 120.40356 * 180.27232 * 4 3 2 6 6 N 1.35858 * 119.19123 * 0.49834 * 4 3 2 7 7 C 1.46504 * 119.93618 * 179.77608 * 6 4 3 8 8 C 1.50710 * 109.46880 * 269.30214 * 7 6 4 9 9 O 1.21276 * 119.99726 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99942 * 179.72358 * 8 7 6 11 11 C 1.46930 * 120.63014 * 359.97438 * 10 8 7 12 12 C 1.53623 * 108.54125 * 126.36530 * 11 10 8 13 13 C 1.53042 * 109.24008 * 54.86121 * 12 11 10 14 14 C 1.53001 * 109.45979 * 178.48971 * 13 12 11 15 15 C 1.50702 * 109.46956 * 295.06306 * 14 13 12 16 16 H 1.08003 * 120.00036 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99756 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00339 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99727 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47151 * 59.99873 * 19 17 15 21 21 H 1.48503 * 109.47185 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47007 * 299.99858 * 19 17 15 23 23 C 1.53042 * 109.53509 * 298.50782 * 13 12 11 24 24 C 1.46917 * 120.63101 * 180.27691 * 10 8 7 25 25 C 1.34618 * 120.13166 * 359.49610 * 6 4 3 26 26 O 1.21954 * 119.53018 * 180.23241 * 25 6 4 27 27 N 1.31752 * 120.08356 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46819 * 300.02329 * 1 2 3 30 30 H 1.09000 * 109.46897 * 60.02148 * 1 2 3 31 31 H 1.08001 * 120.46508 * 359.97438 * 3 2 1 32 32 H 1.09008 * 109.47290 * 235.85168 * 5 4 3 33 33 H 1.08998 * 109.47090 * 355.84678 * 5 4 3 34 34 H 1.08998 * 109.47300 * 115.84884 * 5 4 3 35 35 H 1.09005 * 109.47215 * 149.30947 * 7 6 4 36 36 H 1.08995 * 109.47335 * 29.30455 * 7 6 4 37 37 H 1.08994 * 109.58490 * 246.20379 * 11 10 8 38 38 H 1.09006 * 109.58529 * 6.62644 * 11 10 8 39 39 H 1.09000 * 109.63849 * 294.86915 * 12 11 10 40 40 H 1.08998 * 109.45706 * 174.73529 * 12 11 10 41 41 H 1.08997 * 109.45312 * 58.51972 * 13 12 11 42 42 H 1.08996 * 109.47102 * 55.06765 * 14 13 12 43 43 H 1.09001 * 109.47015 * 175.06522 * 14 13 12 44 44 H 0.97006 * 120.00061 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.49874 * 301.41521 * 23 13 12 46 46 H 1.09004 * 109.52377 * 181.33334 * 23 13 12 47 47 H 1.09006 * 109.58793 * 353.37494 * 24 10 8 48 48 H 1.09003 * 109.58856 * 113.65520 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2078 1.2097 0.0000 4 6 3.5679 1.1859 0.0057 5 6 4.3533 2.4720 0.0120 6 7 4.2096 -0.0116 0.0008 7 6 5.6740 -0.0563 0.0018 8 6 6.1767 -0.0826 -1.4187 9 8 5.3893 -0.0652 -2.3409 10 7 7.5014 -0.1193 -1.6642 11 6 8.4677 -0.1336 -0.5574 12 6 9.4088 -1.3331 -0.7460 13 6 10.0462 -1.2605 -2.1354 14 6 11.0133 -2.4325 -2.3144 15 6 12.1563 -2.2936 -1.3421 16 1 12.1893 -1.4537 -0.6639 17 6 13.1597 -3.2388 -1.3182 18 7 13.1192 -4.2619 -2.1436 19 14 14.5761 -3.0671 -0.1124 20 1 14.0478 -3.0696 1.2754 21 1 15.5149 -4.2045 -0.2862 22 1 15.2913 -1.7909 -0.3675 23 6 8.9533 -1.3335 -3.2043 24 6 8.0069 -0.1392 -3.0435 25 6 3.5026 -1.1572 0.0008 26 8 4.0899 -2.2260 0.0008 27 7 2.1675 -1.1400 0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 1.6768 2.1502 -0.0004 32 1 5.0386 2.4836 -0.8356 33 1 3.6682 3.3165 -0.0633 34 1 4.9211 2.5465 0.9394 35 1 6.0098 -0.9531 0.5227 36 1 6.0641 0.8260 0.5091 37 1 9.0443 0.7913 -0.5638 38 1 7.9369 -0.2292 0.3899 39 1 8.8434 -2.2604 -0.6531 40 1 10.1894 -1.3052 0.0142 41 1 10.5907 -0.3217 -2.2364 42 1 10.4881 -3.3689 -2.1265 43 1 11.4008 -2.4314 -3.3332 44 1 13.8254 -4.9267 -2.1270 45 1 8.3922 -2.2607 -3.0882 46 1 9.4093 -1.3056 -4.1940 47 1 7.1720 -0.2384 -3.7373 48 1 8.5446 0.7864 -3.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517744116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:56 Heat of formation + Delta-G solvation = -63.723702 kcal Electronic energy + Delta-G solvation = -29125.104886 eV Core-core repulsion = 25179.032458 eV Total energy + Delta-G solvation = -3946.072428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.06102 -41.19272 -38.88470 -38.57633 -37.14968 -35.78651 -34.12784 -33.35644 -32.39809 -31.44000 -30.15311 -29.42429 -27.92127 -26.23165 -24.34446 -24.20355 -23.67026 -22.81703 -21.44976 -20.20659 -19.52936 -18.85597 -18.41309 -18.30089 -17.29622 -17.15185 -16.62780 -16.54346 -16.44820 -15.33914 -15.15976 -15.07510 -14.87562 -14.75216 -14.60403 -14.50120 -14.39380 -14.22461 -14.01796 -13.92416 -13.50496 -13.42573 -13.16308 -13.00943 -12.94837 -12.78165 -12.52451 -12.50283 -12.35656 -12.19055 -12.02679 -11.83148 -11.81469 -11.40673 -11.20783 -10.90458 -10.89434 -10.70532 -10.52823 -9.74554 -9.53529 -8.16703 -6.27193 -0.39650 0.62624 1.15455 1.30788 1.41428 1.44453 1.51752 1.90287 2.42505 2.65805 3.14246 3.17008 3.23522 3.23894 3.55819 3.68421 3.84789 3.98191 3.98420 4.04141 4.13489 4.23486 4.35614 4.40506 4.44021 4.50360 4.58056 4.62025 4.65723 4.74586 4.81859 4.83248 4.87001 4.88722 5.00653 5.04328 5.18357 5.25694 5.29833 5.36438 5.42092 5.47179 5.48523 5.54677 5.79035 5.87475 6.21221 6.27110 6.67147 6.88428 6.90106 7.07375 7.42029 8.95361 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.002406 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.153311 B =11635.443603 C =11784.664997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.262 3.738 3 C -0.285 4.285 4 C 0.211 3.789 5 C -0.130 4.130 6 N -0.500 5.500 7 C 0.071 3.929 8 C 0.502 3.498 9 O -0.580 6.580 10 N -0.598 5.598 11 C 0.107 3.893 12 C -0.119 4.119 13 C -0.071 4.071 14 C 0.030 3.970 15 C -0.525 4.525 16 H 0.074 0.926 17 C -0.008 4.008 18 N -0.941 5.941 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.262 1.262 23 C -0.125 4.125 24 C 0.122 3.878 25 C 0.623 3.377 26 O -0.599 6.599 27 N -0.607 5.607 28 H 0.067 0.933 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.208 0.792 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.180 0.820 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.076 0.924 42 H -0.025 1.025 43 H -0.015 1.015 44 H 0.260 0.740 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.123 24.310 8.701 34.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 C -0.309 4.309 4 C 0.094 3.906 5 C -0.186 4.186 6 N -0.214 5.214 7 C -0.055 4.055 8 C 0.290 3.710 9 O -0.461 6.461 10 N -0.331 5.331 11 C -0.014 4.014 12 C -0.157 4.157 13 C -0.089 4.089 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.092 0.908 17 C -0.205 4.205 18 N -0.582 5.582 19 Si 0.789 3.211 20 H -0.189 1.189 21 H -0.218 1.218 22 H -0.187 1.187 23 C -0.163 4.163 24 C 0.000 4.000 25 C 0.326 3.674 26 O -0.478 6.478 27 N -0.345 5.345 28 H 0.087 0.913 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.224 0.776 32 H 0.100 0.900 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.197 0.803 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.052 0.948 40 H 0.102 0.898 41 H 0.094 0.906 42 H -0.006 1.006 43 H 0.003 0.997 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.195 22.540 8.174 32.672 hybrid contribution 1.567 -0.944 -0.150 1.836 sum -20.628 21.596 8.023 30.923 Atomic orbital electron populations 1.21129 0.84624 1.04970 1.06312 1.23054 0.99820 0.87963 0.78626 1.21812 0.91614 1.01564 1.15953 1.22091 0.94608 0.87765 0.86154 1.21427 1.01640 0.90372 1.05158 1.45997 1.08781 1.07777 1.58869 1.22090 0.78568 1.09553 0.95291 1.20979 0.82460 0.75984 0.91605 1.90698 1.55895 1.52242 1.47229 1.48220 1.05008 1.71147 1.08696 1.22243 0.90598 0.99748 0.88790 1.21904 0.98486 0.97308 0.98032 1.21033 0.94451 0.99257 0.94186 1.19036 0.93665 0.92920 0.95051 1.21646 1.06638 1.08652 1.19350 0.90812 1.26057 1.01545 0.95081 0.97845 1.70129 1.34939 1.13482 1.39615 0.85510 0.78483 0.77733 0.79380 1.18919 1.21848 1.18699 1.21944 0.96835 0.97428 1.00140 1.21598 0.97157 0.98905 0.82372 1.18409 0.86100 0.83595 0.79326 1.90943 1.70067 1.29977 1.56861 1.69745 1.04964 1.31068 1.28766 0.91343 0.85729 0.86543 0.77550 0.90016 0.84938 0.86137 0.86073 0.80333 0.87251 0.87343 0.94833 0.89828 0.90605 1.00625 0.99664 0.93138 0.94955 0.90859 0.90891 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.19 71.24 0.73 -0.27 16 2 C 0.26 4.85 6.84 42.95 0.29 5.15 16 3 C -0.29 -3.27 9.41 22.13 0.21 -3.06 16 4 C 0.21 3.00 6.68 41.42 0.28 3.28 16 5 C -0.13 -0.46 8.72 71.24 0.62 0.17 16 6 N -0.50 -12.20 2.08 -646.70 -1.34 -13.54 16 7 C 0.07 1.47 3.71 85.64 0.32 1.79 16 8 C 0.50 14.04 7.62 87.66 0.67 14.71 16 9 O -0.58 -21.15 15.84 -3.02 -0.05 -21.20 16 10 N -0.60 -15.47 2.97 -817.99 -2.43 -17.89 16 11 C 0.11 2.26 6.37 86.51 0.55 2.81 16 12 C -0.12 -3.89 5.21 30.82 0.16 -3.73 16 13 C -0.07 -2.68 2.10 -10.77 -0.02 -2.70 16 14 C 0.03 1.58 4.45 29.85 0.13 1.71 16 15 C -0.52 -28.45 8.39 25.60 0.21 -28.23 16 16 H 0.07 3.64 7.06 -2.91 -0.02 3.62 16 17 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 18 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 19 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 23 C -0.13 -4.36 5.36 30.68 0.16 -4.20 16 24 C 0.12 3.41 6.43 86.38 0.56 3.96 16 25 C 0.62 22.15 8.34 179.49 1.50 23.65 16 26 O -0.60 -27.41 16.74 -5.16 -0.09 -27.50 16 27 N -0.61 -19.18 10.39 -313.21 -3.25 -22.44 16 28 H 0.07 0.87 8.11 -2.39 -0.02 0.85 16 29 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.21 0.15 7.96 -2.91 -0.02 0.13 16 32 H 0.08 0.54 7.88 -2.38 -0.02 0.52 16 33 H 0.13 -0.35 7.89 -2.39 -0.02 -0.37 16 34 H 0.12 -0.18 7.67 -2.39 -0.02 -0.19 16 35 H 0.12 2.91 6.97 -2.38 -0.02 2.90 16 36 H 0.18 1.46 6.39 -2.39 -0.02 1.44 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.11 1.59 5.94 -2.38 -0.01 1.58 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.08 2.80 6.91 -2.39 -0.02 2.78 16 41 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 42 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 43 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 44 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 45 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 2.49 8.14 -2.38 -0.02 2.48 16 47 H 0.07 2.26 7.01 -2.38 -0.02 2.24 16 48 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -96.75 386.92 2.94 -93.81 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.96 Total: 6.26 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.83 Total: 14.99 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -6.74 Total: -111.78 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -0.13 Total: -48.70 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -96.75 2.94 -93.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517744116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.088 kcal (2) G-P(sol) polarization free energy of solvation -96.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds