Wall clock time and date at job start Tue Mar 31 2020 17:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38280 * 119.53452 * 2 1 4 4 C 1.38494 * 119.24040 * 180.27326 * 3 2 1 5 5 C 1.50690 * 120.82378 * 179.70862 * 4 3 2 6 6 C 1.39339 * 118.34996 * 359.44362 * 4 3 2 7 7 N 1.39754 * 120.48849 * 180.25123 * 6 4 3 8 8 C 1.34775 * 120.00199 * 305.88408 * 7 6 4 9 9 O 1.21384 * 119.99527 * 357.04413 * 8 7 6 10 10 C 1.49349 * 120.00448 * 177.04746 * 8 7 6 11 11 O 1.21362 * 120.00074 * 1.98968 * 10 8 7 12 12 N 1.34782 * 120.00242 * 181.98790 * 10 8 7 13 13 C 1.46500 * 119.99814 * 3.32552 * 12 10 8 14 14 C 1.50697 * 109.47270 * 83.39527 * 13 12 10 15 15 H 1.08001 * 119.99785 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00103 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00056 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99693 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47314 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46964 * 120.00407 * 18 16 14 21 21 H 1.48498 * 109.47006 * 239.99585 * 18 16 14 22 22 C 1.46499 * 120.00224 * 183.32754 * 12 10 8 23 23 C 1.52998 * 109.47335 * 124.13582 * 22 12 10 24 24 C 1.53000 * 109.46888 * 244.13817 * 22 12 10 25 25 C 1.38904 * 119.01847 * 0.26547 * 6 4 3 26 26 C 1.50697 * 119.67007 * 179.97438 * 25 6 4 27 27 N 1.31802 * 120.65372 * 0.02889 * 25 6 4 28 28 H 1.09001 * 109.47182 * 270.29789 * 1 2 3 29 29 H 1.08998 * 109.47426 * 30.29393 * 1 2 3 30 30 H 1.09001 * 109.47806 * 150.29955 * 1 2 3 31 31 H 1.07998 * 120.38081 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47633 * 276.51945 * 5 4 3 33 33 H 1.09001 * 109.47679 * 156.51257 * 5 4 3 34 34 H 1.09004 * 109.46963 * 36.51589 * 5 4 3 35 35 H 0.97004 * 120.00103 * 125.88328 * 7 6 4 36 36 H 1.08998 * 109.47267 * 203.39523 * 13 12 10 37 37 H 1.09002 * 109.47263 * 323.39334 * 13 12 10 38 38 H 0.96992 * 119.99893 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.47007 * 4.13190 * 22 12 10 40 40 H 1.09002 * 109.46913 * 60.00008 * 23 22 12 41 41 H 1.08997 * 109.47005 * 179.97438 * 23 22 12 42 42 H 1.09001 * 109.46859 * 299.99815 * 23 22 12 43 43 H 1.08999 * 109.47492 * 59.99898 * 24 22 12 44 44 H 1.08997 * 109.47123 * 179.97438 * 24 22 12 45 45 H 1.09002 * 109.47158 * 299.99868 * 24 22 12 46 46 H 1.09002 * 109.46679 * 94.76202 * 26 25 6 47 47 H 1.08996 * 109.47266 * 214.75212 * 26 25 6 48 48 H 1.08996 * 109.47494 * 334.76106 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2031 0.0000 4 6 3.5735 1.1960 -0.0058 5 6 4.3523 2.4861 -0.0125 6 6 4.2289 -0.0336 0.0005 7 7 5.6252 -0.0929 0.0004 8 6 6.3272 0.5570 -0.9489 9 8 5.7460 1.1493 -1.8348 10 6 7.8202 0.5484 -0.9111 11 8 8.4017 -0.0737 -0.0464 12 7 8.5218 1.2315 -1.8372 13 6 7.8210 2.0413 -2.8368 14 6 7.4927 3.3901 -2.2502 15 1 7.7773 3.6208 -1.2343 16 6 6.8291 4.3295 -3.0106 17 7 6.4821 4.0484 -4.2476 18 14 6.4216 6.0011 -2.2831 19 1 6.9160 6.0661 -0.8843 20 1 7.0750 7.0640 -3.0884 21 1 4.9504 6.2024 -2.2986 22 6 9.9853 1.1642 -1.8443 23 6 10.4675 0.6931 -3.2178 24 6 10.5610 2.5507 -1.5496 25 6 3.4740 -1.1995 0.0067 26 6 4.1676 -2.5374 0.0129 27 7 2.1570 -1.1473 0.0060 28 1 -0.3633 0.0053 1.0277 29 1 -0.3634 0.8873 -0.5184 30 1 -0.3635 -0.8926 -0.5092 31 1 1.6473 2.1376 0.0004 32 1 4.4359 2.8547 -1.0349 33 1 5.3487 2.3113 0.3933 34 1 3.8355 3.2256 0.5991 35 1 6.0892 -0.6018 0.6836 36 1 8.4585 2.1709 -3.7114 37 1 6.8993 1.5387 -3.1304 38 1 6.0155 4.7094 -4.7825 39 1 10.3204 0.4619 -1.0810 40 1 10.1324 1.3954 -3.9811 41 1 11.5563 0.6434 -3.2232 42 1 10.0573 -0.2947 -3.4277 43 1 10.2175 2.8864 -0.5711 44 1 11.6498 2.5006 -1.5544 45 1 10.2259 3.2531 -2.3129 46 1 4.2596 -2.8941 1.0388 47 1 3.5850 -3.2514 -0.5690 48 1 5.1598 -2.4343 -0.4262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570142282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:52 Heat of formation + Delta-G solvation = -26.861249 kcal Electronic energy + Delta-G solvation = -30367.945850 eV Core-core repulsion = 26423.471898 eV Total energy + Delta-G solvation = -3944.473952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.00850 -39.80429 -38.05856 -36.21031 -35.08031 -33.88950 -32.85493 -32.08779 -31.25917 -28.96011 -27.47705 -27.27295 -26.74132 -26.66169 -24.22345 -22.98448 -21.67255 -21.22367 -20.08663 -19.07975 -17.65658 -16.91029 -16.63625 -16.50653 -16.16208 -15.01329 -14.92817 -14.82598 -14.60085 -14.25002 -13.84902 -13.56275 -13.54651 -13.24788 -13.20585 -12.98857 -12.76101 -12.58074 -12.36230 -12.25906 -12.09916 -12.00221 -11.79883 -11.78384 -11.62700 -11.54397 -11.37590 -11.04758 -10.93168 -10.84659 -10.58153 -10.16344 -10.04253 -9.96936 -9.60286 -9.40776 -9.04652 -8.77903 -8.27348 -8.14654 -7.81330 -6.06416 -4.08629 1.10430 1.40768 2.10823 2.86024 3.23594 3.32724 3.35255 3.74300 3.89493 4.06418 4.28955 4.40463 4.71428 4.80379 4.97046 5.15206 5.28922 5.35593 5.40725 5.51857 5.53332 5.57231 5.57525 5.58921 5.63172 5.72117 5.72958 5.89498 6.02347 6.06202 6.07357 6.08047 6.23754 6.26064 6.34470 6.36656 6.52871 6.61714 6.68860 6.74233 6.90166 6.93394 7.32809 7.47962 7.53427 7.83593 8.09423 8.12053 8.18353 8.38865 8.65472 8.94807 9.53633 11.02160 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.004856 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.187965 B = 5764.711653 C = 7603.112037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.120 3.880 3 C -0.169 4.169 4 C -0.018 4.018 5 C -0.115 4.115 6 C 0.089 3.911 7 N -0.659 5.659 8 C 0.495 3.505 9 O -0.440 6.440 10 C 0.508 3.492 11 O -0.564 6.564 12 N -0.551 5.551 13 C 0.212 3.788 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.070 3.930 17 N -0.887 5.887 18 Si 0.884 3.116 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.132 3.868 23 C -0.159 4.159 24 C -0.154 4.154 25 C 0.125 3.875 26 C -0.103 4.103 27 N -0.481 5.481 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.415 0.585 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.261 0.739 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -7.912 7.463 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.017 4.017 3 C -0.189 4.189 4 C -0.027 4.027 5 C -0.172 4.172 6 C -0.007 4.007 7 N -0.312 5.312 8 C 0.277 3.723 9 O -0.308 6.308 10 C 0.290 3.710 11 O -0.446 6.446 12 N -0.282 5.282 13 C 0.094 3.906 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.133 4.133 17 N -0.526 5.526 18 Si 0.712 3.288 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.029 3.971 23 C -0.217 4.217 24 C -0.212 4.212 25 C -0.015 4.015 26 C -0.160 4.160 27 N -0.193 5.193 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.153 0.847 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.253 0.747 36 H 0.052 0.948 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.368 -8.421 7.008 11.794 hybrid contribution 0.422 1.791 0.598 1.935 sum -3.946 -6.629 7.606 10.834 Atomic orbital electron populations 1.20651 0.88917 1.03329 1.02716 1.21152 0.96785 0.88131 0.95659 1.21708 0.93469 0.99309 1.04404 1.20472 0.93850 0.95258 0.93115 1.20940 0.98967 0.92483 1.04780 1.18207 0.83708 0.93452 1.05286 1.43072 1.03468 1.53231 1.31385 1.20442 0.89218 0.80074 0.82524 1.90888 1.70753 1.37320 1.31814 1.19713 0.87535 0.80975 0.82803 1.90643 1.71250 1.45872 1.36828 1.48385 1.06132 1.43606 1.30043 1.20230 0.93885 0.90455 0.86046 1.21255 1.37151 0.97690 0.99202 0.92755 1.24789 0.95541 0.98160 0.94778 1.69925 1.39925 1.34741 1.08002 0.86664 0.78253 0.84542 0.79328 1.19841 1.21045 1.20918 1.21034 0.79829 0.98243 0.98039 1.22134 1.00543 1.01600 0.97444 1.22072 0.98991 0.96997 1.03092 1.21224 0.89215 0.94594 0.96469 1.20664 1.00015 0.92341 1.02985 1.67290 1.08298 1.29233 1.14436 0.90705 0.90801 0.90658 0.84730 0.87750 0.91569 0.91831 0.74707 0.94781 0.90076 0.92930 0.89362 0.91207 0.91961 0.92829 0.92780 0.92867 0.90428 0.90440 0.90298 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.16 36.01 0.37 -0.63 16 2 C 0.12 1.68 6.78 -82.56 -0.56 1.12 16 3 C -0.17 -2.45 9.46 -39.47 -0.37 -2.83 16 4 C -0.02 -0.29 5.52 -104.12 -0.57 -0.87 16 5 C -0.12 -2.04 8.33 36.00 0.30 -1.74 16 6 C 0.09 1.46 5.81 -83.59 -0.49 0.97 16 7 N -0.66 -10.75 3.82 -10.20 -0.04 -10.79 16 8 C 0.50 9.75 6.09 -11.63 -0.07 9.68 16 9 O -0.44 -9.98 9.83 5.47 0.05 -9.93 16 10 C 0.51 10.32 7.67 -11.63 -0.09 10.23 16 11 O -0.56 -11.44 15.82 5.49 0.09 -11.36 16 12 N -0.55 -11.37 2.38 -168.01 -0.40 -11.77 16 13 C 0.21 5.05 4.10 -5.20 -0.02 5.03 16 14 C -0.51 -13.15 7.62 -34.44 -0.26 -13.42 16 15 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 16 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 17 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 18 Si 0.88 20.70 29.54 -169.99 -5.02 15.67 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C 0.13 2.32 3.24 -67.93 -0.22 2.10 16 23 C -0.16 -2.45 9.11 37.16 0.34 -2.11 16 24 C -0.15 -2.61 8.90 37.16 0.33 -2.27 16 25 C 0.13 1.89 6.80 -82.36 -0.56 1.33 16 26 C -0.10 -1.22 9.95 36.00 0.36 -0.86 16 27 N -0.48 -7.33 10.18 -5.57 -0.06 -7.38 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.10 2.19 7.21 -51.93 -0.37 1.82 16 33 H 0.07 1.23 6.45 -51.93 -0.33 0.90 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.41 5.90 8.17 -40.82 -0.33 5.56 16 36 H 0.03 0.85 6.22 -51.93 -0.32 0.52 16 37 H 0.08 2.14 5.19 -52.17 -0.27 1.87 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.09 1.53 6.92 -51.93 -0.36 1.17 16 40 H 0.07 1.17 6.52 -51.93 -0.34 0.83 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.48 7.28 -51.93 -0.38 1.10 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.89 7.27 -51.93 -0.38 0.52 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -30.15 387.95 -7.70 -37.84 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.28 Total: 8.48 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.62 Total: 7.49 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.24 Total: -54.05 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.14 Total: -21.29 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.15 -7.70 -37.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570142282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.981 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds