Wall clock time and date at job start Tue Mar 31 2020 18:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31792 * 119.09355 * 2 1 4 4 C 1.32495 * 120.96522 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.40874 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.17298 * 359.72943 * 4 3 2 7 7 C 1.50701 * 120.82260 * 180.26941 * 6 4 3 8 8 C 1.50696 * 109.47086 * 270.27268 * 7 6 4 9 9 O 1.21288 * 120.00281 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99911 * 180.02562 * 8 7 6 11 11 C 1.46925 * 120.63040 * 359.71765 * 10 8 7 12 12 C 1.53622 * 108.54112 * 126.36935 * 11 10 8 13 13 C 1.53042 * 109.24171 * 54.85814 * 12 11 10 14 14 C 1.53000 * 109.45776 * 178.48986 * 13 12 11 15 15 C 1.50704 * 109.47100 * 295.06693 * 14 13 12 16 16 H 1.08002 * 119.99792 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00070 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99531 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99824 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47380 * 59.99852 * 19 17 15 21 21 H 1.48505 * 109.46908 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47263 * 299.99664 * 19 17 15 23 23 C 1.53040 * 109.53589 * 298.50773 * 13 12 11 24 24 C 1.46930 * 120.62744 * 180.02562 * 10 8 7 25 25 C 1.39371 * 118.34925 * 0.53617 * 6 4 3 26 26 O 1.35525 * 120.51077 * 179.73648 * 25 6 4 27 27 N 1.31763 * 119.09756 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46691 * 269.97555 * 1 2 3 29 29 H 1.08994 * 109.47165 * 29.97540 * 1 2 3 30 30 H 1.08994 * 109.46802 * 149.97908 * 1 2 3 31 31 H 1.08998 * 109.46637 * 90.00582 * 5 4 3 32 32 H 1.09003 * 109.46963 * 210.00321 * 5 4 3 33 33 H 1.08993 * 109.47380 * 330.00161 * 5 4 3 34 34 H 1.09003 * 109.46830 * 30.26871 * 7 6 4 35 35 H 1.08998 * 109.46989 * 150.27289 * 7 6 4 36 36 H 1.09005 * 109.58503 * 246.20434 * 11 10 8 37 37 H 1.08999 * 109.58414 * 6.62363 * 11 10 8 38 38 H 1.08997 * 109.63499 * 294.86425 * 12 11 10 39 39 H 1.08997 * 109.45394 * 174.73864 * 12 11 10 40 40 H 1.09001 * 109.45161 * 58.52244 * 13 12 11 41 41 H 1.08997 * 109.47401 * 55.06254 * 14 13 12 42 42 H 1.08999 * 109.47297 * 175.06954 * 14 13 12 43 43 H 0.97007 * 119.99472 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.49970 * 301.41380 * 23 13 12 45 45 H 1.09002 * 109.52197 * 181.33893 * 23 13 12 46 46 H 1.09002 * 109.58797 * 353.36682 * 24 10 8 47 47 H 1.09000 * 109.58748 * 113.65659 * 24 10 8 48 48 H 0.96696 * 114.00027 * 269.72169 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1516 0.0000 4 6 3.4721 1.1949 -0.0005 5 6 4.1920 2.5188 0.0001 6 6 4.1849 0.0106 0.0047 7 6 5.6919 0.0164 0.0104 8 6 6.1996 0.0222 -1.4085 9 8 5.4150 0.0211 -2.3334 10 7 7.5256 0.0275 -1.6498 11 6 8.4884 0.0340 -0.5399 12 6 9.4660 -1.1350 -0.7345 13 6 10.1053 -1.0323 -2.1212 14 6 11.1080 -2.1731 -2.3059 15 6 12.2432 -2.0072 -1.3286 16 1 12.2490 -1.1714 -0.6445 17 6 13.2748 -2.9218 -1.3085 18 7 13.2679 -3.9391 -2.1419 19 14 14.6821 -2.7157 -0.0976 20 1 14.1506 -2.7439 1.2887 21 1 15.6554 -3.8230 -0.2767 22 1 15.3591 -1.4167 -0.3418 23 6 9.0185 -1.1302 -3.1943 24 6 8.0357 0.0337 -3.0277 25 6 3.4754 -1.1890 -0.0013 26 8 4.1301 -2.3756 -0.0019 27 7 2.1478 -1.1513 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 4.3660 2.8372 1.0279 32 1 5.1472 2.4132 -0.5143 33 1 3.5836 3.2635 -0.5129 34 1 6.0498 0.9065 0.5279 35 1 6.0568 -0.8735 0.5232 36 1 9.0367 0.9760 -0.5374 37 1 7.9578 -0.0849 0.4047 38 1 8.9288 -2.0796 -0.6506 39 1 10.2430 -1.0892 0.0285 40 1 10.6214 -0.0767 -2.2132 41 1 10.6109 -3.1264 -2.1268 42 1 11.4986 -2.1524 -3.3233 43 1 13.9935 -4.5828 -2.1275 44 1 8.4854 -2.0749 -3.0872 45 1 9.4765 -1.0809 -4.1822 46 1 7.2064 -0.0855 -3.7249 47 1 8.5458 0.9767 -3.2242 48 1 4.3197 -2.7197 -0.8855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580076773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:41 Heat of formation + Delta-G solvation = -73.546622 kcal Electronic energy + Delta-G solvation = -28975.797758 eV Core-core repulsion = 25029.299376 eV Total energy + Delta-G solvation = -3946.498382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52699 -41.10468 -38.87849 -38.66003 -36.03496 -35.68732 -34.12239 -33.81503 -32.31353 -31.25006 -30.03960 -29.76830 -27.57083 -26.08581 -24.28978 -24.08516 -23.53197 -22.71302 -21.22303 -19.96594 -19.76097 -19.14269 -18.41820 -18.23615 -17.08083 -16.93764 -16.53431 -16.41445 -15.90131 -15.55766 -15.21808 -15.03170 -14.97448 -14.63974 -14.49697 -14.29334 -14.23468 -14.14326 -13.84541 -13.63646 -13.35571 -13.35337 -13.08550 -13.04383 -12.94465 -12.77787 -12.71874 -12.47060 -12.31796 -12.11126 -11.77175 -11.69189 -11.37306 -11.33983 -11.14646 -10.90317 -10.83473 -10.49854 -10.39287 -10.09370 -9.60899 -8.14677 -6.24151 -0.30357 -0.10169 1.43421 1.45361 1.52717 1.54831 1.98874 2.22716 2.44264 2.60417 2.90711 3.19299 3.26104 3.52464 3.55585 3.71525 3.96523 4.04037 4.06777 4.15952 4.21067 4.23995 4.43437 4.50295 4.53622 4.59315 4.64600 4.66194 4.70955 4.71491 4.83257 4.85024 4.90068 4.91791 4.98687 5.11221 5.13533 5.33097 5.35610 5.37957 5.43682 5.56437 5.61421 5.84387 5.86354 5.91819 6.30208 6.31738 6.42319 6.93193 6.99653 7.10485 7.44790 8.97019 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002385 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.929752 B =11737.547745 C =11912.426320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.326 3.674 3 N -0.539 5.539 4 C 0.195 3.805 5 C -0.106 4.106 6 C -0.198 4.198 7 C -0.086 4.086 8 C 0.519 3.481 9 O -0.585 6.585 10 N -0.602 5.602 11 C 0.108 3.892 12 C -0.115 4.115 13 C -0.073 4.073 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.070 0.930 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.960 3.040 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.266 1.266 23 C -0.121 4.121 24 C 0.120 3.880 25 C 0.361 3.639 26 O -0.481 6.481 27 N -0.568 5.568 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.064 0.936 41 H -0.017 1.017 42 H -0.017 1.017 43 H 0.260 0.740 44 H 0.045 0.955 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.254 13.639 6.877 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.059 3.941 3 N -0.256 5.256 4 C 0.050 3.950 5 C -0.163 4.163 6 C -0.203 4.203 7 C -0.126 4.126 8 C 0.309 3.691 9 O -0.466 6.466 10 N -0.334 5.334 11 C -0.013 4.013 12 C -0.154 4.154 13 C -0.092 4.092 14 C -0.005 4.005 15 C -0.563 4.563 16 H 0.088 0.912 17 C -0.202 4.202 18 N -0.579 5.579 19 Si 0.785 3.215 20 H -0.189 1.189 21 H -0.218 1.218 22 H -0.191 1.191 23 C -0.160 4.160 24 C -0.002 4.002 25 C 0.174 3.826 26 O -0.291 6.291 27 N -0.294 5.294 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.161 0.839 35 H 0.142 0.858 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -21.491 13.487 6.931 26.302 hybrid contribution 2.109 -1.181 -0.495 2.468 sum -19.382 12.306 6.436 23.843 Atomic orbital electron populations 1.20707 0.82980 1.05091 1.05152 1.23753 0.99489 0.81917 0.88897 1.68212 1.09763 1.30253 1.17385 1.22050 0.89166 0.96528 0.87211 1.20930 0.99738 0.90302 1.05337 1.21099 0.97981 0.93526 1.07740 1.20563 0.89491 1.08281 0.94255 1.20781 0.81637 0.75250 0.91470 1.90686 1.56065 1.52416 1.47384 1.48229 1.05419 1.71695 1.08072 1.22151 0.90519 0.99385 0.89268 1.21873 0.98167 0.97798 0.97524 1.21040 0.94548 0.98917 0.94678 1.19025 0.93486 0.93236 0.94789 1.21653 1.05975 1.09706 1.18930 0.91212 1.25986 1.01344 0.95149 0.97767 1.70113 1.33845 1.14774 1.39216 0.85577 0.78658 0.77668 0.79610 1.18873 1.21803 1.19129 1.21907 0.96541 0.97925 0.99602 1.21548 0.97017 0.98692 0.82981 1.19497 0.86953 0.86119 0.89996 1.84597 1.74557 1.34358 1.35580 1.67830 1.10069 1.32727 1.18806 0.87941 0.88238 0.89054 0.86706 0.89682 0.89330 0.83892 0.85829 0.89027 0.86954 0.93538 0.90524 0.91727 0.99864 0.99863 0.93152 0.93651 0.91417 0.90375 0.89859 0.71780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.32 71.24 0.74 -0.45 16 2 C 0.33 7.65 7.64 138.76 1.06 8.71 16 3 N -0.54 -12.63 10.27 -176.22 -1.81 -14.44 16 4 C 0.20 4.17 6.82 42.46 0.29 4.46 16 5 C -0.11 -1.44 9.44 71.24 0.67 -0.77 16 6 C -0.20 -4.39 4.42 -19.59 -0.09 -4.47 16 7 C -0.09 -1.48 3.34 29.10 0.10 -1.39 16 8 C 0.52 12.22 7.36 87.66 0.64 12.87 16 9 O -0.58 -18.21 15.45 -3.05 -0.05 -18.26 16 10 N -0.60 -13.84 2.97 -817.96 -2.43 -16.27 16 11 C 0.11 2.14 6.37 86.51 0.55 2.69 16 12 C -0.12 -3.44 5.21 30.82 0.16 -3.28 16 13 C -0.07 -2.62 2.10 -10.77 -0.02 -2.64 16 14 C 0.03 1.57 4.45 29.85 0.13 1.70 16 15 C -0.52 -27.66 8.39 25.60 0.21 -27.44 16 16 H 0.07 3.40 7.06 -2.91 -0.02 3.38 16 17 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 18 N -0.94 -56.29 13.29 21.45 0.28 -56.01 16 19 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 23 C -0.12 -3.82 5.36 30.69 0.16 -3.66 16 24 C 0.12 3.08 6.43 86.38 0.56 3.64 16 25 C 0.36 9.25 7.81 84.82 0.66 9.91 16 26 O -0.48 -11.20 12.75 -88.28 -1.13 -12.33 16 27 N -0.57 -15.19 10.36 -300.69 -3.12 -18.31 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.09 6.54 -2.39 -0.02 1.07 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.14 1.48 6.63 -2.39 -0.02 1.46 16 35 H 0.12 1.99 7.19 -2.39 -0.02 1.97 16 36 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 37 H 0.11 1.51 5.93 -2.39 -0.01 1.50 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 2.44 6.91 -2.39 -0.02 2.43 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.08 2.16 7.00 -2.39 -0.02 2.14 16 47 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.42 7.44 9.06 -74.06 -0.67 6.77 16 Total: -1.00 -75.44 387.33 0.39 -75.05 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.31 Total: 15.99 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.29 Total: 0.04 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -7.07 Total: -105.02 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.17 Total: -30.59 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -75.44 0.39 -75.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580076773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.506 kcal (2) G-P(sol) polarization free energy of solvation -75.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds