Wall clock time and date at job start Tue Mar 31 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38832 * 120.75669 * 2 1 4 4 C 1.38071 * 119.31283 * 180.25448 * 3 2 1 5 5 N 1.31925 * 120.84820 * 359.74533 * 4 3 2 6 6 C 1.32349 * 121.63854 * 0.02562 * 5 4 3 7 7 N 1.39406 * 119.69646 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00215 * 354.89889 * 7 6 5 9 9 O 1.21271 * 120.00288 * 5.07670 * 8 7 6 10 10 C 1.50701 * 120.00168 * 185.08548 * 8 7 6 11 11 N 1.46501 * 109.47627 * 179.97438 * 10 8 7 12 12 C 1.46501 * 119.99423 * 89.99434 * 11 10 8 13 13 C 1.34772 * 120.00354 * 270.00322 * 11 10 8 14 14 O 1.21284 * 119.99870 * 359.97438 * 13 11 10 15 15 C 1.50698 * 120.00171 * 179.97438 * 13 11 10 16 16 C 1.52994 * 109.47155 * 180.02562 * 15 13 11 17 17 C 1.53005 * 109.47318 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47264 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47102 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00114 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00133 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00131 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00108 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47063 * 119.99642 * 23 21 19 26 26 H 1.48495 * 109.47229 * 239.99970 * 23 21 19 27 27 C 1.38363 * 120.74787 * 179.75662 * 2 1 3 28 28 H 1.08999 * 109.46988 * 270.24326 * 1 2 3 29 29 H 1.09003 * 109.47064 * 30.24195 * 1 2 3 30 30 H 1.09001 * 109.47291 * 150.24397 * 1 2 3 31 31 H 1.08008 * 120.34431 * 0.02989 * 3 2 1 32 32 H 1.08007 * 119.57540 * 179.77256 * 4 3 2 33 33 H 0.97003 * 119.99600 * 174.88912 * 7 6 5 34 34 H 1.09002 * 109.47017 * 299.99546 * 10 8 7 35 35 H 1.09005 * 109.47282 * 59.99371 * 10 8 7 36 36 H 1.09005 * 109.46810 * 90.01037 * 12 11 10 37 37 H 1.08999 * 109.46994 * 210.00298 * 12 11 10 38 38 H 1.08997 * 109.47710 * 330.00783 * 12 11 10 39 39 H 1.09003 * 109.46786 * 300.00038 * 15 13 11 40 40 H 1.08999 * 109.46963 * 60.00100 * 15 13 11 41 41 H 1.09003 * 109.47253 * 299.99689 * 16 15 13 42 42 H 1.09003 * 109.47614 * 60.00009 * 16 15 13 43 43 H 1.08994 * 109.46784 * 300.00325 * 17 16 15 44 44 H 1.09003 * 109.46757 * 59.99502 * 17 16 15 45 45 H 1.08994 * 109.47805 * 300.00091 * 18 17 16 46 46 H 1.08999 * 109.46862 * 60.00383 * 18 17 16 47 47 H 0.97003 * 120.00030 * 180.02562 * 22 21 19 48 48 H 1.08001 * 120.45066 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2170 1.1930 0.0000 4 6 3.5973 1.1583 -0.0053 5 7 4.2450 0.0090 -0.0054 6 6 3.6043 -1.1491 -0.0009 7 7 4.3295 -2.3396 -0.0006 8 6 5.6725 -2.3106 -0.1086 9 8 6.2577 -1.2485 -0.1134 10 6 6.4472 -3.5982 -0.2237 11 7 7.8777 -3.2998 -0.3286 12 6 8.6960 -3.2014 0.8825 13 6 8.4407 -3.1157 -1.5392 14 8 7.7632 -3.1976 -2.5418 15 6 9.9121 -2.8083 -1.6470 16 6 10.2926 -2.6460 -3.1200 17 6 11.7863 -2.3332 -3.2294 18 6 12.1669 -2.1716 -4.7024 19 6 13.6382 -1.8642 -4.8103 20 1 14.2416 -1.7917 -3.9175 21 6 14.2141 -1.6753 -6.0487 22 7 13.4794 -1.7630 -7.1359 23 14 16.0378 -1.2935 -6.1823 24 1 16.6351 -1.2491 -4.8234 25 1 16.7075 -2.3502 -6.9824 26 1 16.2208 0.0216 -6.8472 27 6 2.2144 -1.1891 0.0051 28 1 -0.3633 0.0044 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3634 -0.8922 -0.5100 31 1 1.6951 2.1386 0.0005 32 1 4.1539 2.0839 -0.0091 33 1 3.8674 -3.1889 0.0776 34 1 6.2673 -4.2106 0.6598 35 1 6.1230 -4.1390 -1.1129 36 1 9.1046 -4.1823 1.1256 37 1 9.5126 -2.4995 0.7132 38 1 8.0799 -2.8492 1.7098 39 1 10.1302 -1.8841 -1.1118 40 1 10.4868 -3.6252 -1.2107 41 1 10.0743 -3.5700 -3.6555 42 1 9.7178 -1.8289 -3.5559 43 1 12.0041 -1.4092 -2.6940 44 1 12.3614 -3.1501 -2.7934 45 1 11.9491 -3.0958 -5.2376 46 1 11.5918 -1.3550 -5.1388 47 1 13.8846 -1.6305 -8.0072 48 1 1.6941 -2.1355 0.0087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588340300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:36 Heat of formation + Delta-G solvation = -37.857007 kcal Electronic energy + Delta-G solvation = -27312.449872 eV Core-core repulsion = 23367.499108 eV Total energy + Delta-G solvation = -3944.950764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16382 -40.12342 -38.92712 -35.73986 -35.16057 -34.83233 -34.07797 -32.60034 -31.00201 -29.94563 -28.54743 -28.25801 -26.63321 -25.28362 -23.69427 -23.20243 -22.01177 -20.53761 -19.94704 -19.19443 -18.22550 -17.51376 -16.97852 -16.39402 -16.24183 -16.15027 -15.92269 -15.60453 -15.49622 -14.75143 -14.45303 -14.42047 -14.38028 -13.70376 -13.50416 -13.33034 -13.10440 -13.07217 -12.95287 -12.68527 -12.57112 -12.21912 -12.13544 -12.09030 -11.57222 -11.50060 -11.01386 -10.94949 -10.56134 -10.45901 -10.43885 -10.33552 -9.84272 -9.78999 -9.54315 -9.44928 -9.16662 -8.91644 -8.81121 -8.61647 -8.25906 -5.90512 -3.92729 0.77672 0.96270 2.25712 2.42607 2.79932 2.94775 3.36647 3.43572 3.47871 3.58768 4.02148 4.28269 4.41316 4.50029 4.54284 4.62161 4.75275 4.79493 4.84750 4.91147 5.05656 5.09570 5.10781 5.24872 5.26568 5.39799 5.44419 5.45875 5.46162 5.53344 5.55801 5.84526 5.93576 6.00551 6.14085 6.22375 6.38293 6.46007 6.62409 6.81301 6.91971 7.08266 7.21158 7.29012 7.70759 7.80109 7.96565 8.01152 8.11530 8.21591 8.53450 9.15297 9.70679 11.20884 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017915 B = 0.001797 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.568224 B =15578.663003 C =16432.513898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.017 4.017 3 C -0.210 4.210 4 C 0.137 3.863 5 N -0.481 5.481 6 C 0.367 3.633 7 N -0.665 5.665 8 C 0.484 3.516 9 O -0.453 6.453 10 C 0.100 3.900 11 N -0.609 5.609 12 C 0.083 3.917 13 C 0.521 3.479 14 O -0.532 6.532 15 C -0.134 4.134 16 C -0.104 4.104 17 C -0.110 4.110 18 C 0.019 3.981 19 C -0.519 4.519 20 H 0.055 0.945 21 C 0.054 3.946 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.213 4.213 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.416 0.584 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.020 -2.588 22.813 36.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.025 4.025 3 C -0.231 4.231 4 C -0.020 4.020 5 N -0.196 5.196 6 C 0.136 3.864 7 N -0.313 5.313 8 C 0.267 3.733 9 O -0.320 6.320 10 C -0.028 4.028 11 N -0.344 5.344 12 C -0.060 4.060 13 C 0.311 3.689 14 O -0.407 6.407 15 C -0.174 4.174 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.018 4.018 19 C -0.557 4.557 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.236 4.236 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.253 0.747 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.870 -1.915 22.045 34.809 hybrid contribution -0.249 -0.163 -0.018 0.298 sum -27.120 -2.078 22.027 35.000 Atomic orbital electron populations 1.20829 0.90037 1.03471 1.02908 1.20083 0.96599 0.92327 0.93506 1.21967 0.95605 0.98662 1.06866 1.22700 0.91483 0.95500 0.92365 1.67681 1.39712 0.96970 1.15188 1.18488 0.87712 0.86658 0.93562 1.43688 1.07628 1.07185 1.72779 1.21697 0.81659 0.93054 0.76860 1.90836 1.67715 1.31322 1.42097 1.21211 0.82324 0.93778 1.05450 1.47557 1.06880 1.72422 1.07515 1.21820 0.95910 1.01970 0.86329 1.21167 0.91105 0.74786 0.81873 1.90693 1.64609 1.49683 1.35687 1.21804 0.90544 1.03340 1.01708 1.21469 0.98131 1.02595 0.91984 1.21643 0.92235 0.99743 1.01113 1.19104 0.95938 0.97179 0.89592 1.21334 0.94515 1.47605 0.92245 0.92679 1.25047 0.97918 0.95665 0.96000 1.69990 1.35439 1.50402 0.97664 0.86556 0.85671 0.77866 0.78008 1.19775 1.21090 1.21078 1.21315 0.92407 0.99547 1.10343 0.90430 0.90821 0.90985 0.84792 0.82391 0.74750 0.87412 0.86586 0.92205 0.90183 0.91366 0.88899 0.89062 0.91843 0.91827 0.93446 0.93471 0.96588 0.96572 0.93146 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.06 36.01 0.36 -0.11 16 2 C -0.02 -0.12 5.91 -104.35 -0.62 -0.74 16 3 C -0.21 -1.64 9.81 -39.42 -0.39 -2.03 16 4 C 0.14 1.42 11.17 -17.57 -0.20 1.23 16 5 N -0.48 -6.47 7.89 -12.37 -0.10 -6.57 16 6 C 0.37 3.97 7.42 -154.70 -1.15 2.83 16 7 N -0.66 -5.88 5.39 -11.43 -0.06 -5.94 16 8 C 0.48 5.70 7.86 -10.99 -0.09 5.61 16 9 O -0.45 -7.56 14.69 5.57 0.08 -7.48 16 10 C 0.10 0.90 5.89 -5.19 -0.03 0.87 16 11 N -0.61 -7.02 2.36 -182.95 -0.43 -7.45 16 12 C 0.08 0.67 10.24 59.85 0.61 1.28 16 13 C 0.52 8.07 7.67 -10.99 -0.08 7.99 16 14 O -0.53 -10.30 15.56 5.55 0.09 -10.21 16 15 C -0.13 -1.98 4.25 -27.89 -0.12 -2.10 16 16 C -0.10 -1.99 4.50 -26.73 -0.12 -2.11 16 17 C -0.11 -2.37 5.15 -26.73 -0.14 -2.51 16 18 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 19 C -0.52 -15.34 9.11 -34.44 -0.31 -15.65 16 20 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -28.09 13.29 55.43 0.74 -27.36 16 23 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 27 C -0.21 -1.65 9.64 -39.24 -0.38 -2.03 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 30 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 31 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 32 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.42 1.74 8.70 -40.82 -0.36 1.38 16 34 H 0.11 0.48 8.07 -51.93 -0.42 0.07 16 35 H 0.12 1.06 7.42 -51.93 -0.39 0.68 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.67 6.44 -51.93 -0.33 0.33 16 38 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 39 H 0.09 1.27 7.40 -51.93 -0.38 0.89 16 40 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -41.17 404.87 -9.23 -50.40 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.75 Total: -3.27 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.88 Total: -5.56 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.15 Total: -47.31 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.17 Total: -17.69 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -41.17 -9.23 -50.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588340300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.545 kcal (2) G-P(sol) polarization free energy of solvation -41.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds