Wall clock time and date at job start Tue Mar 31 2020 18:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40226 * 120.37581 * 2 1 4 4 C 1.35254 * 120.03267 * 179.72573 * 3 2 1 5 5 N 1.35961 * 120.81615 * 0.51412 * 4 3 2 6 6 C 1.46505 * 119.61103 * 179.75887 * 5 4 3 7 7 C 1.34667 * 120.77263 * 359.47938 * 5 4 3 8 8 O 1.22065 * 120.03095 * 180.28014 * 7 5 4 9 9 C 1.36783 * 120.38540 * 179.97438 * 2 1 3 10 10 N 1.40211 * 120.39820 * 0.04021 * 9 2 1 11 11 C 1.34776 * 119.99953 * 120.25044 * 10 9 2 12 12 O 1.21601 * 119.99972 * 4.96783 * 11 10 9 13 13 N 1.34780 * 120.00029 * 184.97800 * 11 10 9 14 14 C 1.46930 * 120.62767 * 184.98610 * 13 11 10 15 15 C 1.53623 * 108.53791 * 126.36848 * 14 13 11 16 16 C 1.53036 * 109.24630 * 54.85671 * 15 14 13 17 17 C 1.52994 * 109.46261 * 178.48720 * 16 15 14 18 18 C 1.50695 * 109.47395 * 295.06781 * 17 16 15 19 19 H 1.08006 * 120.00039 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00356 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00283 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47158 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47080 * 119.99533 * 22 20 18 25 25 H 1.48500 * 109.47484 * 240.00040 * 22 20 18 26 26 C 1.53043 * 109.53723 * 298.50880 * 16 15 14 27 27 C 1.46918 * 120.62986 * 5.26788 * 13 11 10 28 28 H 1.09000 * 109.47237 * 270.01852 * 1 2 3 29 29 H 1.08999 * 109.47852 * 30.02312 * 1 2 3 30 30 H 1.09004 * 109.46911 * 150.02345 * 1 2 3 31 31 H 1.07999 * 119.98087 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.58933 * 180.26942 * 4 3 2 33 33 H 1.08994 * 109.46871 * 269.72292 * 6 5 4 34 34 H 1.08995 * 109.47046 * 29.72954 * 6 5 4 35 35 H 1.09000 * 109.46895 * 149.72672 * 6 5 4 36 36 H 0.96998 * 120.00281 * 300.24253 * 10 9 2 37 37 H 1.09001 * 109.58478 * 246.19720 * 14 13 11 38 38 H 1.08997 * 109.59017 * 6.62416 * 14 13 11 39 39 H 1.08994 * 109.63597 * 294.86335 * 15 14 13 40 40 H 1.09005 * 109.42947 * 174.72563 * 15 14 13 41 41 H 1.09002 * 109.44942 * 58.52111 * 16 15 14 42 42 H 1.08996 * 109.47191 * 55.06998 * 17 16 15 43 43 H 1.09005 * 109.47288 * 175.06642 * 17 16 15 44 44 H 0.96994 * 120.00003 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.49658 * 301.41762 * 26 16 15 46 46 H 1.08994 * 109.52582 * 181.32762 * 26 16 15 47 47 H 1.08999 * 109.58908 * 353.37049 * 27 13 11 48 48 H 1.08994 * 109.59219 * 113.65718 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.2098 0.0000 4 6 3.5686 1.2017 0.0056 5 7 4.2581 0.0299 0.0008 6 6 5.7230 0.0520 0.0017 7 6 3.6103 -1.1507 0.0009 8 8 4.2430 -2.1946 0.0017 9 6 2.1989 -1.1800 0.0005 10 7 1.5145 -2.4037 0.0002 11 6 1.6994 -3.2789 -1.0078 12 8 2.5259 -3.0483 -1.8694 13 7 0.9680 -4.4098 -1.0611 14 6 1.2323 -5.4244 -2.0905 15 6 1.4475 -6.7785 -1.3977 16 6 0.2418 -7.0867 -0.5069 17 6 0.4338 -8.4519 0.1564 18 6 0.4367 -9.5274 -0.8992 19 1 0.3135 -9.2636 -1.9393 20 6 0.5956 -10.8483 -0.5372 21 7 0.7451 -11.1696 0.7293 22 14 0.5985 -12.1814 -1.8457 23 1 0.4137 -11.5629 -3.1830 24 1 1.8937 -12.9070 -1.8102 25 1 -0.5100 -13.1343 -1.5841 26 6 0.1140 -6.0090 0.5722 27 6 -0.1127 -4.6485 -0.0949 28 1 -0.3634 0.0003 1.0277 29 1 -0.3635 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6819 2.1484 -0.0004 32 1 4.1074 2.1376 0.0100 33 1 6.0869 0.0570 -1.0257 34 1 6.0725 0.9474 0.5155 35 1 6.0993 -0.8323 0.5161 36 1 0.9080 -2.6204 0.7256 37 1 0.3805 -5.4885 -2.7676 38 1 2.1271 -5.1525 -2.6504 39 1 2.3498 -6.7385 -0.7875 40 1 1.5518 -7.5590 -2.1515 41 1 -0.6634 -7.1020 -1.1139 42 1 1.3832 -8.4655 0.6916 43 1 -0.3811 -8.6331 0.8574 44 1 0.8565 -12.0989 0.9840 45 1 1.0289 -5.9761 1.1637 46 1 -0.7306 -6.2413 1.2208 47 1 -0.1055 -3.8646 0.6624 48 1 -1.0721 -4.6482 -0.6121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592234280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:43 Heat of formation + Delta-G solvation = -28.937533 kcal Electronic energy + Delta-G solvation = -29225.099981 eV Core-core repulsion = 25280.535995 eV Total energy + Delta-G solvation = -3944.563987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66146 -40.03129 -37.56717 -37.14194 -36.03021 -34.04320 -33.36274 -31.97545 -30.66068 -30.29640 -29.04220 -27.81719 -26.35997 -24.70377 -23.71837 -22.60512 -21.84421 -21.83049 -20.16027 -19.30301 -18.32453 -17.85503 -17.41672 -16.60545 -16.20297 -16.10625 -15.48940 -15.16727 -14.62329 -14.47922 -14.42980 -14.07937 -13.89514 -13.50698 -13.48851 -13.23322 -13.08359 -13.00210 -12.78466 -12.76804 -12.39690 -12.13408 -12.02280 -11.83502 -11.73695 -11.15856 -10.95529 -10.70572 -10.65516 -10.47387 -10.36505 -10.11663 -9.98133 -9.77425 -9.57204 -9.26180 -9.19808 -8.91352 -8.31891 -8.23674 -7.83373 -5.96182 -3.97556 0.56092 1.71550 2.32509 2.86106 3.33715 3.33908 3.41537 3.45323 3.55772 3.94285 4.25713 4.34793 4.49301 4.60401 4.75897 4.94050 4.99885 5.05660 5.17629 5.25655 5.36115 5.38652 5.39729 5.40056 5.43590 5.66190 5.68063 5.73904 5.76033 5.88596 6.01683 6.04837 6.17699 6.24667 6.40004 6.44546 6.54828 6.63049 6.72537 6.90901 7.01135 7.09164 7.13572 7.19773 7.70766 7.85975 7.98833 8.04015 8.05466 8.46915 8.81461 9.09156 9.66168 11.15254 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.002468 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.401763 B =11341.097981 C =11852.092123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.013 4.013 3 C -0.217 4.217 4 C 0.124 3.876 5 N -0.503 5.503 6 C 0.063 3.937 7 C 0.516 3.484 8 O -0.516 6.516 9 C 0.046 3.954 10 N -0.676 5.676 11 C 0.712 3.288 12 O -0.573 6.573 13 N -0.620 5.620 14 C 0.128 3.872 15 C -0.119 4.119 16 C -0.079 4.079 17 C 0.027 3.973 18 C -0.514 4.514 19 H 0.057 0.943 20 C 0.055 3.945 21 N -0.896 5.896 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.131 4.131 27 C 0.114 3.886 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.403 0.597 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 30.509 1.391 30.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.019 4.019 3 C -0.242 4.242 4 C -0.003 4.003 5 N -0.216 5.216 6 C -0.079 4.079 7 C 0.313 3.687 8 O -0.394 6.394 9 C -0.052 4.052 10 N -0.330 5.330 11 C 0.414 3.586 12 O -0.448 6.448 13 N -0.358 5.358 14 C 0.006 3.994 15 C -0.157 4.157 16 C -0.098 4.098 17 C -0.010 4.010 18 C -0.552 4.552 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.717 3.283 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.169 4.169 27 C -0.009 4.009 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.165 0.835 32 H 0.179 0.821 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.242 0.758 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.107 29.738 0.828 29.824 hybrid contribution -0.269 -0.885 -0.130 0.934 sum 1.838 28.853 0.699 28.920 Atomic orbital electron populations 1.20832 0.90166 1.03744 1.02857 1.20238 0.97002 0.91644 0.92993 1.20342 0.92375 0.98200 1.13237 1.21877 0.93459 0.89632 0.95296 1.45373 1.09063 1.06498 1.60690 1.22108 0.77228 1.04666 1.03899 1.17130 0.88751 0.83022 0.79762 1.91016 1.68153 1.30130 1.50092 1.17625 0.89897 0.85595 1.12095 1.42239 1.48432 1.16710 1.25622 1.15755 0.81105 0.79860 0.81845 1.90904 1.37072 1.76341 1.40518 1.47306 1.35510 1.18773 1.34165 1.21755 1.01530 0.87082 0.89033 1.21997 0.99049 0.94636 1.00023 1.21167 0.97043 0.96239 0.95301 1.19127 0.97031 0.89148 0.95657 1.21286 1.48954 0.91376 0.93580 0.92504 1.25025 0.95521 0.98835 0.95168 1.69975 1.50271 1.17794 1.15568 0.86586 0.77517 0.82073 0.82135 1.19722 1.21105 1.21139 1.22047 1.02109 0.93802 0.98984 1.21692 0.90075 0.98069 0.91098 0.90232 0.90634 0.90893 0.83531 0.82114 0.90673 0.89814 0.88874 0.75764 0.92029 0.89654 0.92302 0.89795 0.92336 0.96641 0.96659 0.93157 0.91958 0.91124 0.91807 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.79 36.00 0.35 -0.45 16 2 C -0.01 -0.12 5.90 -104.40 -0.62 -0.73 16 3 C -0.22 -1.44 9.70 -39.90 -0.39 -1.83 16 4 C 0.12 0.79 10.28 -16.78 -0.17 0.62 16 5 N -0.50 -5.14 2.99 -126.96 -0.38 -5.52 16 6 C 0.06 0.47 10.37 59.85 0.62 1.09 16 7 C 0.52 7.84 6.93 -15.19 -0.11 7.73 16 8 O -0.52 -10.24 14.93 -12.95 -0.19 -10.44 16 9 C 0.05 0.63 5.75 -83.43 -0.48 0.15 16 10 N -0.68 -9.55 4.04 -14.07 -0.06 -9.61 16 11 C 0.71 12.67 7.81 -86.92 -0.68 11.99 16 12 O -0.57 -12.48 14.32 -12.54 -0.18 -12.66 16 13 N -0.62 -10.17 2.97 -178.23 -0.53 -10.70 16 14 C 0.13 2.23 6.45 -3.48 -0.02 2.21 16 15 C -0.12 -2.33 5.21 -26.39 -0.14 -2.47 16 16 C -0.08 -1.58 2.10 -90.58 -0.19 -1.77 16 17 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 18 C -0.51 -14.32 8.39 -34.44 -0.29 -14.61 16 19 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 27 C 0.11 1.53 6.43 -3.71 -0.02 1.51 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.07 0.59 7.46 -51.93 -0.39 0.20 16 31 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.16 0.31 8.03 -52.49 -0.42 -0.11 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.29 8.01 -51.93 -0.42 -0.13 16 35 H 0.09 0.88 7.39 -51.93 -0.38 0.49 16 36 H 0.40 4.54 6.32 -40.82 -0.26 4.29 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.59 7.03 -51.93 -0.37 1.23 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.73 6.91 -51.93 -0.36 1.37 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.67 5.58 -51.93 -0.29 0.38 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -39.06 383.42 -9.79 -48.85 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.46 Total: 0.64 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -2.49 Total: 3.22 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.23 Total: -52.24 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.37 Total: -23.10 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.06 -9.79 -48.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592234280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.917 kcal (2) G-P(sol) polarization free energy of solvation -39.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds