Wall clock time and date at job start Tue Mar 31 2020 18:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21323 * 119.99982 * 2 1 4 4 C 1.46616 * 119.99970 * 180.02562 * 2 1 3 5 5 C 1.38622 * 126.51420 * 273.31167 * 4 2 1 6 6 C 1.50701 * 125.82707 * 0.02562 * 5 4 2 7 7 N 1.34116 * 108.34456 * 179.79158 * 5 4 2 8 8 H 0.96996 * 125.34824 * 180.26313 * 7 5 4 9 9 C 1.37836 * 109.30516 * 0.37524 * 7 5 4 10 10 C 1.46847 * 125.80041 * 179.88821 * 9 7 5 11 11 O 1.21673 * 119.99859 * 179.69378 * 10 9 7 12 12 N 1.34776 * 119.99978 * 359.68750 * 10 9 7 13 13 C 1.46498 * 119.99898 * 180.02562 * 12 10 9 14 14 C 1.53042 * 109.46046 * 84.93375 * 13 12 10 15 15 C 1.53194 * 109.31114 * 181.38660 * 14 13 12 16 16 N 1.46921 * 108.77274 * 305.36245 * 15 14 13 17 17 C 1.36942 * 120.63003 * 233.62973 * 16 15 14 18 18 H 1.07998 * 119.99786 * 152.03401 * 17 16 15 19 19 C 1.38812 * 120.00026 * 332.03680 * 17 16 15 20 20 N 1.31623 * 120.00016 * 158.57673 * 19 17 16 21 21 Si 1.86803 * 119.99977 * 338.57453 * 19 17 16 22 22 H 1.48498 * 109.47060 * 93.57078 * 21 19 17 23 23 H 1.48502 * 109.47000 * 213.56844 * 21 19 17 24 24 H 1.48499 * 109.46881 * 333.56844 * 21 19 17 25 25 C 1.46928 * 118.74304 * 53.61199 * 16 15 14 26 26 C 1.53034 * 109.45853 * 205.00046 * 13 12 10 27 27 C 1.36244 * 108.39843 * 359.62055 * 9 7 5 28 28 C 1.50700 * 126.50726 * 180.20749 * 27 9 7 29 29 H 1.08999 * 109.46707 * 184.74322 * 1 2 3 30 30 H 1.08996 * 109.47262 * 304.74045 * 1 2 3 31 31 H 1.08993 * 109.47061 * 64.74643 * 1 2 3 32 32 H 1.09005 * 109.46735 * 84.71109 * 6 5 4 33 33 H 1.08992 * 109.47094 * 204.70702 * 6 5 4 34 34 H 1.08999 * 109.47218 * 324.71280 * 6 5 4 35 35 H 0.96997 * 119.99756 * 359.97438 * 12 10 9 36 36 H 1.09005 * 109.44781 * 324.96637 * 13 12 10 37 37 H 1.09003 * 109.49658 * 301.33137 * 14 13 12 38 38 H 1.08996 * 109.50048 * 61.43472 * 14 13 12 39 39 H 1.08998 * 109.58540 * 185.57928 * 15 14 13 40 40 H 1.09001 * 109.70679 * 65.22284 * 15 14 13 41 41 H 0.96996 * 119.99828 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.59071 * 186.60190 * 25 16 15 43 43 H 1.09004 * 109.70318 * 66.24564 * 25 16 15 44 44 H 1.09003 * 109.50043 * 298.56454 * 26 13 12 45 45 H 1.09006 * 109.50060 * 58.66320 * 26 13 12 46 46 H 1.09001 * 109.47094 * 90.02806 * 28 27 9 47 47 H 1.09003 * 109.47201 * 210.02224 * 28 27 9 48 48 H 1.08999 * 109.47359 * 330.01936 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2401 -1.2697 -0.0006 5 6 2.5968 -2.0167 1.1114 6 6 2.2959 -1.6632 2.5451 7 7 3.2509 -3.1103 0.6931 8 1 3.6079 -3.8050 1.2683 9 6 3.3382 -3.0909 -0.6824 10 6 3.9836 -4.1125 -1.5167 11 8 3.9944 -3.9915 -2.7273 12 7 4.5642 -5.1842 -0.9413 13 6 5.2086 -6.2031 -1.7736 14 6 6.6443 -5.7741 -2.0846 15 6 7.3036 -6.8250 -2.9835 16 7 7.1934 -8.1385 -2.3345 17 6 8.3058 -8.9097 -2.1271 18 1 8.3330 -9.6080 -1.3036 19 6 9.3986 -8.7940 -2.9753 20 7 10.5891 -9.1844 -2.5718 21 14 9.1795 -8.0844 -4.6893 22 1 9.4578 -6.6260 -4.6605 23 1 10.1217 -8.7497 -5.6247 24 1 7.7849 -8.3134 -5.1453 25 6 5.8672 -8.6087 -1.9118 26 6 5.2240 -7.5378 -1.0251 27 6 2.7187 -1.9657 -1.1367 28 6 2.5713 -1.5422 -2.5754 29 1 -0.3633 -1.0242 0.0850 30 1 -0.3633 0.5856 0.8444 31 1 -0.3633 0.4384 -0.9294 32 1 1.2951 -2.0101 2.8024 33 1 3.0255 -2.1420 3.1981 34 1 2.3494 -0.5819 2.6716 35 1 4.5559 -5.2804 0.0238 36 1 4.6533 -6.3154 -2.7049 37 1 6.6337 -4.8122 -2.5972 38 1 7.2070 -5.6856 -1.1554 39 1 8.3549 -6.5754 -3.1269 40 1 6.7991 -6.8511 -3.9494 41 1 11.3526 -9.1039 -3.1647 42 1 5.9706 -9.5360 -1.3482 43 1 5.2421 -8.7814 -2.7879 44 1 5.8000 -7.4327 -0.1057 45 1 4.2024 -7.8312 -0.7833 46 1 1.6473 -1.9530 -2.9823 47 1 2.5413 -0.4541 -2.6327 48 1 3.4188 -1.9130 -3.1520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593092141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:35 Heat of formation + Delta-G solvation = -16.306699 kcal Electronic energy + Delta-G solvation = -28787.855698 eV Core-core repulsion = 24843.839425 eV Total energy + Delta-G solvation = -3944.016273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98107 -39.65856 -38.97333 -37.59558 -34.79247 -33.24679 -32.60312 -31.98610 -30.46902 -30.38123 -30.02225 -28.11428 -26.85253 -24.94503 -23.18050 -22.87111 -22.12260 -21.13915 -20.06348 -19.42091 -18.94277 -18.32668 -16.89921 -16.16066 -15.99718 -15.87464 -15.45605 -15.13950 -15.05818 -14.72126 -14.42727 -14.20334 -13.86560 -13.78832 -13.66113 -13.44010 -13.22022 -13.07220 -12.95406 -12.68601 -12.61071 -12.50514 -12.38181 -12.32974 -11.98489 -11.83931 -11.76659 -11.13942 -10.87342 -10.66609 -10.24609 -10.19285 -10.10614 -10.02853 -9.75636 -9.54036 -9.09055 -8.96828 -8.64300 -8.36520 -7.02723 -5.98551 -3.34806 1.20351 1.60702 2.02513 2.62182 3.07133 3.25130 3.33904 3.49305 3.53008 3.94346 4.27121 4.51893 4.55208 4.68164 4.77756 4.90282 4.91644 4.99530 5.04250 5.06717 5.15081 5.23998 5.32612 5.34316 5.36394 5.47365 5.57727 5.62176 5.67883 5.76022 5.86414 5.94829 5.98586 6.06828 6.10648 6.23836 6.28578 6.38026 6.50472 6.54157 6.59011 6.62955 6.66490 6.86243 6.94168 7.22075 7.46481 7.92685 8.14258 8.29068 8.90025 9.68689 10.05998 11.17123 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023885 B = 0.002456 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.021925 B =11396.853431 C =11861.391239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.439 3.561 3 O -0.454 6.454 4 C -0.260 4.260 5 C 0.094 3.906 6 C -0.096 4.096 7 N -0.525 5.525 8 H 0.419 0.581 9 C -0.053 4.053 10 C 0.586 3.414 11 O -0.522 6.522 12 N -0.724 5.724 13 C 0.152 3.848 14 C -0.141 4.141 15 C 0.130 3.870 16 N -0.606 5.606 17 C -0.263 4.263 18 H 0.085 0.915 19 C 0.025 3.975 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.269 1.269 25 C 0.152 3.848 26 C -0.141 4.141 27 C -0.034 4.034 28 C -0.096 4.096 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.389 0.611 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.028 0.972 41 H 0.263 0.737 42 H 0.068 0.932 43 H 0.026 0.974 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.254 14.584 10.587 28.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.314 3.686 3 O -0.327 6.327 4 C -0.268 4.268 5 C -0.027 4.027 6 C -0.153 4.153 7 N -0.120 5.120 8 H 0.257 0.743 9 C -0.164 4.164 10 C 0.373 3.627 11 O -0.399 6.399 12 N -0.374 5.374 13 C 0.049 3.951 14 C -0.181 4.181 15 C 0.004 3.996 16 N -0.330 5.330 17 C -0.391 4.391 18 H 0.103 0.897 19 C -0.174 4.174 20 N -0.549 5.549 21 Si 0.710 3.290 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.194 1.194 25 C 0.025 3.975 26 C -0.180 4.180 27 C -0.042 4.042 28 C -0.153 4.153 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.222 0.778 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.638 14.998 9.689 28.054 hybrid contribution 0.235 -0.109 -0.096 0.276 sum -21.403 14.889 9.594 27.781 Atomic orbital electron populations 1.22234 0.93730 1.04742 1.04655 1.21711 0.91127 0.86516 0.69280 1.90570 1.72523 1.34478 1.35154 1.19862 1.13182 1.00787 0.92965 1.20588 0.98463 0.88075 0.95551 1.20520 1.02911 1.03430 0.88476 1.41535 1.44134 1.19566 1.06772 0.74315 1.19917 1.13306 1.01476 0.81745 1.17040 0.77984 0.80488 0.87196 1.90824 1.59807 1.76188 1.13037 1.46180 1.57774 1.23403 1.10057 1.21040 0.93551 0.86221 0.94276 1.22398 0.94895 0.99397 1.01434 1.21301 0.99758 0.84896 0.93690 1.44400 1.03198 1.15007 1.70368 1.18884 0.91081 1.19508 1.09636 0.89718 1.25291 0.95449 0.98578 0.98077 1.69845 0.98520 1.50495 1.36024 0.86978 0.77740 0.77742 0.86573 1.21516 1.23024 1.19427 1.20856 0.86438 0.94744 0.95466 1.22344 1.00329 0.95154 1.00211 1.19541 0.97096 0.92269 0.95253 1.20445 1.03887 1.00560 0.90435 0.89881 0.89078 0.88727 0.89736 0.90660 0.89682 0.77822 0.89550 0.92228 0.91684 0.90715 0.95410 0.92720 0.91338 0.95634 0.91450 0.92158 0.90967 0.92105 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.13 10.32 36.01 0.37 -0.76 16 2 C 0.44 4.28 6.53 -30.93 -0.20 4.08 16 3 O -0.45 -6.02 17.86 5.52 0.10 -5.92 16 4 C -0.26 -2.69 5.71 -105.11 -0.60 -3.29 16 5 C 0.09 0.77 7.22 -81.45 -0.59 0.18 16 6 C -0.10 -0.44 10.20 36.01 0.37 -0.07 16 7 N -0.52 -4.28 5.90 -5.55 -0.03 -4.31 16 8 H 0.42 2.14 8.13 -40.82 -0.33 1.81 16 9 C -0.05 -0.63 6.98 -82.40 -0.58 -1.20 16 10 C 0.59 8.20 7.76 -12.78 -0.10 8.10 16 11 O -0.52 -9.09 14.34 5.21 0.07 -9.01 16 12 N -0.72 -8.98 5.07 -55.02 -0.28 -9.26 16 13 C 0.15 2.35 2.42 -67.89 -0.16 2.19 16 14 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 15 C 0.13 2.86 4.22 -3.71 -0.02 2.84 16 16 N -0.61 -14.07 2.76 -172.32 -0.47 -14.54 16 17 C -0.26 -7.22 10.02 -15.06 -0.15 -7.37 16 18 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 19 C 0.03 0.73 5.21 -17.43 -0.09 0.64 16 20 N -0.91 -27.62 13.97 55.49 0.78 -26.85 16 21 Si 0.88 22.54 24.38 -169.99 -4.14 18.40 16 22 H -0.29 -7.19 6.66 56.52 0.38 -6.82 16 23 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 24 H -0.27 -6.81 6.69 56.52 0.38 -6.43 16 25 C 0.15 2.81 6.52 -3.71 -0.02 2.79 16 26 C -0.14 -2.05 5.55 -26.61 -0.15 -2.20 16 27 C -0.03 -0.41 6.22 -104.07 -0.65 -1.06 16 28 C -0.10 -1.13 9.63 36.01 0.35 -0.78 16 29 H 0.08 0.38 7.99 -51.93 -0.41 -0.03 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 35 H 0.39 3.56 7.68 -40.82 -0.31 3.24 16 36 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.82 4.64 -51.93 -0.24 1.57 16 40 H 0.03 0.62 7.10 -51.93 -0.37 0.25 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.66 8.05 -51.93 -0.42 0.25 16 48 H 0.09 1.23 6.41 -51.93 -0.33 0.89 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -35.42 386.24 -8.01 -43.43 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.48 Total: 0.88 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.37 Total: 1.36 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.01 Total: -54.96 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.17 Total: -14.93 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.14 Total: 18.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.42 -8.01 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593092141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.125 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds