Wall clock time and date at job start Tue Mar 31 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21323 * 119.99982 * 2 1 4 4 C 1.46616 * 119.99970 * 180.02562 * 2 1 3 5 5 C 1.38622 * 126.51420 * 273.31167 * 4 2 1 6 6 C 1.50701 * 125.82707 * 0.02562 * 5 4 2 7 7 N 1.34116 * 108.34456 * 179.79158 * 5 4 2 8 8 H 0.96996 * 125.34824 * 180.26313 * 7 5 4 9 9 C 1.37836 * 109.30516 * 0.37524 * 7 5 4 10 10 C 1.46847 * 125.80041 * 179.88821 * 9 7 5 11 11 O 1.21673 * 119.99859 * 179.69378 * 10 9 7 12 12 N 1.34776 * 119.99978 * 359.68750 * 10 9 7 13 13 C 1.46498 * 119.99898 * 180.02562 * 12 10 9 14 14 C 1.53042 * 109.46046 * 84.93375 * 13 12 10 15 15 C 1.53194 * 109.31114 * 181.38660 * 14 13 12 16 16 N 1.46921 * 108.77274 * 305.36245 * 15 14 13 17 17 C 1.36942 * 120.63003 * 233.62973 * 16 15 14 18 18 H 1.07998 * 119.99786 * 152.03401 * 17 16 15 19 19 C 1.38812 * 120.00026 * 332.03680 * 17 16 15 20 20 N 1.31623 * 120.00016 * 158.57673 * 19 17 16 21 21 Si 1.86803 * 119.99977 * 338.57453 * 19 17 16 22 22 H 1.48498 * 109.47060 * 93.57078 * 21 19 17 23 23 H 1.48502 * 109.47000 * 213.56844 * 21 19 17 24 24 H 1.48499 * 109.46881 * 333.56844 * 21 19 17 25 25 C 1.46928 * 118.74304 * 53.61199 * 16 15 14 26 26 C 1.53034 * 109.45853 * 205.00046 * 13 12 10 27 27 C 1.36244 * 108.39843 * 359.62055 * 9 7 5 28 28 C 1.50700 * 126.50726 * 180.20749 * 27 9 7 29 29 H 1.08999 * 109.46707 * 184.74322 * 1 2 3 30 30 H 1.08996 * 109.47262 * 304.74045 * 1 2 3 31 31 H 1.08993 * 109.47061 * 64.74643 * 1 2 3 32 32 H 1.09005 * 109.46735 * 84.71109 * 6 5 4 33 33 H 1.08992 * 109.47094 * 204.70702 * 6 5 4 34 34 H 1.08999 * 109.47218 * 324.71280 * 6 5 4 35 35 H 0.96997 * 119.99756 * 359.97438 * 12 10 9 36 36 H 1.09005 * 109.44781 * 324.96637 * 13 12 10 37 37 H 1.09003 * 109.49658 * 301.33137 * 14 13 12 38 38 H 1.08996 * 109.50048 * 61.43472 * 14 13 12 39 39 H 1.08998 * 109.58540 * 185.57928 * 15 14 13 40 40 H 1.09001 * 109.70679 * 65.22284 * 15 14 13 41 41 H 0.96996 * 119.99828 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.59071 * 186.60190 * 25 16 15 43 43 H 1.09004 * 109.70318 * 66.24564 * 25 16 15 44 44 H 1.09003 * 109.50043 * 298.56454 * 26 13 12 45 45 H 1.09006 * 109.50060 * 58.66320 * 26 13 12 46 46 H 1.09001 * 109.47094 * 90.02806 * 28 27 9 47 47 H 1.09003 * 109.47201 * 210.02224 * 28 27 9 48 48 H 1.08999 * 109.47359 * 330.01936 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2401 -1.2697 -0.0006 5 6 2.5968 -2.0167 1.1114 6 6 2.2959 -1.6632 2.5451 7 7 3.2509 -3.1103 0.6931 8 1 3.6079 -3.8050 1.2683 9 6 3.3382 -3.0909 -0.6824 10 6 3.9836 -4.1125 -1.5167 11 8 3.9944 -3.9915 -2.7273 12 7 4.5642 -5.1842 -0.9413 13 6 5.2086 -6.2031 -1.7736 14 6 6.6443 -5.7741 -2.0846 15 6 7.3036 -6.8250 -2.9835 16 7 7.1934 -8.1385 -2.3345 17 6 8.3058 -8.9097 -2.1271 18 1 8.3330 -9.6080 -1.3036 19 6 9.3986 -8.7940 -2.9753 20 7 10.5891 -9.1844 -2.5718 21 14 9.1795 -8.0844 -4.6893 22 1 9.4578 -6.6260 -4.6605 23 1 10.1217 -8.7497 -5.6247 24 1 7.7849 -8.3134 -5.1453 25 6 5.8672 -8.6087 -1.9118 26 6 5.2240 -7.5378 -1.0251 27 6 2.7187 -1.9657 -1.1367 28 6 2.5713 -1.5422 -2.5754 29 1 -0.3633 -1.0242 0.0850 30 1 -0.3633 0.5856 0.8444 31 1 -0.3633 0.4384 -0.9294 32 1 1.2951 -2.0101 2.8024 33 1 3.0255 -2.1420 3.1981 34 1 2.3494 -0.5819 2.6716 35 1 4.5559 -5.2804 0.0238 36 1 4.6533 -6.3154 -2.7049 37 1 6.6337 -4.8122 -2.5972 38 1 7.2070 -5.6856 -1.1554 39 1 8.3549 -6.5754 -3.1269 40 1 6.7991 -6.8511 -3.9494 41 1 11.3526 -9.1039 -3.1647 42 1 5.9706 -9.5360 -1.3482 43 1 5.2421 -8.7814 -2.7879 44 1 5.8000 -7.4327 -0.1057 45 1 4.2024 -7.8312 -0.7833 46 1 1.6473 -1.9530 -2.9823 47 1 2.5413 -0.4541 -2.6327 48 1 3.4188 -1.9130 -3.1520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593092141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:34 Heat of formation + Delta-G solvation = -41.412652 kcal Electronic energy + Delta-G solvation = -28788.944374 eV Core-core repulsion = 24843.839425 eV Total energy + Delta-G solvation = -3945.104948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.75865 -40.78059 -39.83674 -39.04307 -36.21611 -34.30148 -33.92823 -33.04538 -31.99939 -31.76622 -30.72283 -28.82461 -27.88901 -26.52257 -24.49405 -24.19528 -23.30141 -22.23265 -21.40977 -20.43512 -19.71673 -19.29297 -18.75689 -17.60353 -16.85866 -16.68974 -16.67861 -16.29914 -15.98500 -15.95125 -15.61365 -15.37283 -15.31758 -14.91893 -14.74141 -14.53874 -14.44963 -14.11325 -14.04701 -13.82574 -13.75260 -13.45002 -13.23647 -13.20283 -13.01849 -12.98923 -12.73530 -12.60834 -12.52400 -12.25787 -12.08863 -11.80410 -11.53639 -11.49523 -11.13016 -10.83545 -10.74063 -10.19313 -9.84858 -9.14281 -8.98300 -8.19970 -5.50813 0.35517 0.88586 1.26512 1.27699 1.38109 1.46375 1.90561 2.05520 2.24048 2.38633 3.01421 3.27905 3.32601 3.68553 3.74308 3.82376 3.90860 4.04932 4.12978 4.19428 4.28048 4.37859 4.42720 4.46162 4.61295 4.64558 4.65641 4.71823 4.73583 4.76949 4.79592 4.82793 4.92111 4.97835 5.00185 5.05560 5.07187 5.11932 5.13572 5.26788 5.38105 5.41619 5.55204 5.69823 5.85261 6.11030 6.32588 6.51399 6.52670 6.88612 7.11476 7.59258 8.00789 8.99537 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023885 B = 0.002456 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.021925 B =11396.853431 C =11861.391239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.443 3.557 3 O -0.499 6.499 4 C -0.288 4.288 5 C 0.119 3.881 6 C -0.097 4.097 7 N -0.509 5.509 8 H 0.435 0.565 9 C -0.073 4.073 10 C 0.586 3.414 11 O -0.563 6.563 12 N -0.709 5.709 13 C 0.162 3.838 14 C -0.130 4.130 15 C 0.127 3.873 16 N -0.619 5.619 17 C -0.244 4.244 18 H 0.062 0.938 19 C -0.031 4.031 20 N -0.952 5.952 21 Si 0.935 3.065 22 H -0.283 1.283 23 H -0.309 1.309 24 H -0.264 1.264 25 C 0.142 3.858 26 C -0.124 4.124 27 C -0.051 4.051 28 C -0.092 4.092 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.408 0.592 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.026 0.974 41 H 0.261 0.739 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.356 15.334 12.745 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.321 3.679 3 O -0.375 6.375 4 C -0.295 4.295 5 C -0.004 4.004 6 C -0.154 4.154 7 N -0.106 5.106 8 H 0.276 0.724 9 C -0.184 4.184 10 C 0.375 3.625 11 O -0.442 6.442 12 N -0.360 5.360 13 C 0.058 3.942 14 C -0.171 4.171 15 C 0.001 3.999 16 N -0.344 5.344 17 C -0.373 4.373 18 H 0.079 0.921 19 C -0.226 4.226 20 N -0.598 5.598 21 Si 0.764 3.236 22 H -0.210 1.210 23 H -0.237 1.237 24 H -0.188 1.188 25 C 0.017 3.983 26 C -0.163 4.163 27 C -0.059 4.059 28 C -0.150 4.150 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.245 0.755 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.798 15.731 11.894 31.684 hybrid contribution 1.112 -0.328 -0.662 1.335 sum -23.686 15.404 11.232 30.405 Atomic orbital electron populations 1.22252 0.90469 1.06219 1.05769 1.22246 0.92816 0.85507 0.67329 1.90559 1.73692 1.35732 1.37564 1.20088 1.14631 1.01602 0.93176 1.21169 0.95737 0.86759 0.96734 1.20716 1.05022 1.03574 0.86050 1.41465 1.43548 1.20046 1.05574 0.72392 1.19490 1.14638 1.01154 0.83120 1.17305 0.77550 0.80756 0.86907 1.90808 1.61390 1.77086 1.14936 1.45841 1.56964 1.22379 1.10801 1.20726 0.91550 0.87342 0.94604 1.22229 0.96643 0.97845 1.00354 1.21248 0.98600 0.85538 0.94523 1.44536 1.03973 1.15197 1.70644 1.18890 0.92130 1.18282 1.08040 0.92051 1.25835 0.95396 1.00282 1.01061 1.69950 0.99281 1.53533 1.37068 0.86077 0.77515 0.77269 0.82708 1.20975 1.23749 1.18807 1.21112 0.84347 0.96291 0.96508 1.22159 1.02193 0.92989 0.99006 1.19725 0.97554 0.92945 0.95647 1.20363 1.03315 1.00553 0.90726 0.88353 0.87201 0.88003 0.87108 0.88628 0.89904 0.75547 0.90883 0.92608 0.91753 0.93369 0.95572 0.92983 0.91140 0.94777 0.90881 0.88291 0.89992 0.91959 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 10.32 71.24 0.73 -0.95 16 2 C 0.44 7.98 6.53 27.88 0.18 8.16 16 3 O -0.50 -13.00 17.86 -3.16 -0.06 -13.06 16 4 C -0.29 -5.44 5.71 -20.18 -0.12 -5.56 16 5 C 0.12 1.56 7.22 42.30 0.31 1.87 16 6 C -0.10 -0.48 10.20 71.24 0.73 0.25 16 7 N -0.51 -6.72 5.90 -171.47 -1.01 -7.73 16 8 H 0.43 2.70 8.13 -92.71 -0.75 1.94 16 9 C -0.07 -1.59 6.98 39.99 0.28 -1.32 16 10 C 0.59 15.62 7.76 86.50 0.67 16.30 16 11 O -0.56 -19.56 14.34 -4.26 -0.06 -19.62 16 12 N -0.71 -15.77 5.07 -446.22 -2.26 -18.03 16 13 C 0.16 4.65 2.42 45.02 0.11 4.76 16 14 C -0.13 -4.62 5.65 30.67 0.17 -4.45 16 15 C 0.13 5.54 4.22 86.36 0.36 5.90 16 16 N -0.62 -28.33 2.76 -699.09 -1.93 -30.25 16 17 C -0.24 -13.51 10.02 84.03 0.84 -12.67 16 18 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 19 C -0.03 -1.79 5.21 84.86 0.44 -1.35 16 20 N -0.95 -59.65 13.97 21.65 0.30 -59.35 16 21 Si 0.93 47.61 24.38 68.60 1.67 49.28 16 22 H -0.28 -13.98 6.66 99.48 0.66 -13.32 16 23 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 24 H -0.26 -12.98 6.69 99.48 0.67 -12.31 16 25 C 0.14 5.00 6.52 86.36 0.56 5.56 16 26 C -0.12 -3.21 5.55 30.67 0.17 -3.04 16 27 C -0.05 -1.18 6.22 -19.51 -0.12 -1.30 16 28 C -0.09 -2.20 9.63 71.24 0.69 -1.52 16 29 H 0.10 0.58 7.99 -2.39 -0.02 0.56 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.08 0.54 8.07 -2.39 -0.02 0.52 16 35 H 0.41 5.96 7.68 -92.71 -0.71 5.25 16 36 H 0.07 2.37 7.58 -2.38 -0.02 2.35 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 2.35 4.64 -2.39 -0.01 2.34 16 40 H 0.03 1.16 7.10 -2.39 -0.02 1.14 16 41 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.07 2.43 7.93 -2.39 -0.02 2.42 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.06 1.40 8.05 -2.39 -0.02 1.38 16 48 H 0.07 1.88 6.41 -2.39 -0.02 1.87 16 Total: -1.00 -80.47 386.24 2.11 -78.36 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -0.56 Total: 9.77 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 6.01 Total: 10.64 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.90 Total: -115.37 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.12 Total: -32.68 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.67 Total: 49.28 kcal Total: -80.47 2.11 -78.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593092141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.944 kcal (2) G-P(sol) polarization free energy of solvation -80.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds