Wall clock time and date at job start Tue Mar 31 2020 17:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35919 * 117.00039 * 2 1 4 4 C 1.38852 * 120.40516 * 359.97438 * 3 2 1 5 5 N 1.31881 * 121.00125 * 179.72002 * 4 3 2 6 6 C 1.31681 * 121.93919 * 0.28236 * 5 4 3 7 7 C 1.39528 * 120.69420 * 359.97389 * 6 5 4 8 8 C 1.47858 * 120.53294 * 180.02562 * 7 6 5 9 9 O 1.21547 * 119.99929 * 175.39441 * 8 7 6 10 10 N 1.34785 * 119.99626 * 355.39863 * 8 7 6 11 11 C 1.46502 * 119.99344 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46522 * 179.97438 * 11 10 8 13 13 C 1.53041 * 109.46336 * 295.02272 * 12 11 10 14 14 C 1.53185 * 109.31769 * 178.60203 * 13 12 11 15 15 N 1.46929 * 108.76194 * 54.65726 * 14 13 12 16 16 C 1.36945 * 120.62856 * 126.40802 * 15 14 13 17 17 H 1.08000 * 119.99999 * 326.55280 * 16 15 14 18 18 C 1.38813 * 119.99782 * 146.55623 * 16 15 14 19 19 N 1.31619 * 120.00096 * 347.91250 * 18 16 15 20 20 Si 1.86801 * 119.99795 * 167.90856 * 18 16 15 21 21 H 1.48510 * 109.46645 * 90.00176 * 20 18 16 22 22 H 1.48504 * 109.47091 * 209.99724 * 20 18 16 23 23 H 1.48497 * 109.47291 * 330.00288 * 20 18 16 24 24 C 1.46926 * 118.74076 * 306.38072 * 15 14 13 25 25 C 1.53041 * 109.46060 * 174.97244 * 12 11 10 26 26 C 1.38844 * 120.40884 * 180.25226 * 3 2 1 27 27 C 1.50702 * 120.88009 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47223 * 300.00051 * 1 2 3 30 30 H 1.08999 * 109.47448 * 60.00669 * 1 2 3 31 31 H 1.07998 * 119.49806 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.65382 * 179.97438 * 6 5 4 33 33 H 0.96997 * 119.99799 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47259 * 299.99131 * 11 10 8 35 35 H 1.08992 * 109.47243 * 59.99648 * 11 10 8 36 36 H 1.08997 * 109.46375 * 54.99698 * 12 11 10 37 37 H 1.09002 * 109.49807 * 298.57228 * 13 12 11 38 38 H 1.09003 * 109.49446 * 58.66324 * 13 12 11 39 39 H 1.08998 * 109.60251 * 294.87276 * 14 13 12 40 40 H 1.09005 * 109.70701 * 174.50689 * 14 13 12 41 41 H 0.96999 * 119.99860 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.59078 * 293.82540 * 24 15 14 43 43 H 1.08998 * 109.70460 * 173.46562 * 24 15 14 44 44 H 1.09004 * 109.49451 * 301.33758 * 25 12 11 45 45 H 1.08997 * 109.49887 * 61.39333 * 25 12 11 46 46 H 1.08994 * 109.47967 * 263.53969 * 27 26 3 47 47 H 1.08998 * 109.46945 * 23.54403 * 27 26 3 48 48 H 1.09005 * 109.46891 * 143.53808 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8845 3.5621 0.0050 6 6 3.1952 3.6891 0.0057 7 6 4.0198 2.5636 0.0011 8 6 5.4911 2.7104 0.0025 9 8 6.1999 1.7263 0.0830 10 7 6.0462 3.9355 -0.0854 11 6 7.5040 4.0808 -0.0846 12 6 7.8687 5.5626 -0.1941 13 6 7.4081 6.1023 -1.5501 14 6 7.7436 7.5941 -1.6422 15 7 9.1776 7.7733 -1.3773 16 6 9.9717 8.4504 -2.2640 17 1 9.7682 8.3941 -3.3232 18 6 11.0381 9.2092 -1.8015 19 7 11.1488 9.4747 -0.5171 20 14 12.3161 9.8534 -3.0020 21 1 11.9010 11.1909 -3.4962 22 1 13.6283 9.9648 -2.3156 23 1 12.4349 8.9170 -4.1483 24 6 9.7434 7.2127 -0.1426 25 6 9.3851 5.7252 -0.0673 26 6 3.4320 1.2936 -0.0053 27 6 4.2810 0.0485 -0.0105 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 0.2197 2.3225 -0.0014 32 1 3.6365 4.6748 0.0099 33 1 5.4804 4.7207 -0.1500 34 1 7.9091 3.6741 0.8420 35 1 7.9235 3.5400 -0.9328 36 1 7.3760 6.1179 0.6040 37 1 7.9193 5.5643 -2.3485 38 1 6.3314 5.9649 -1.6496 39 1 7.1636 8.1457 -0.9023 40 1 7.5075 7.9630 -2.6404 41 1 11.8938 10.0052 -0.1940 42 1 9.3265 7.7331 0.7196 43 1 10.8273 7.3276 -0.1498 44 1 9.7158 5.3193 0.8888 45 1 9.8776 5.1902 -0.8793 46 1 4.5853 -0.1883 1.0090 47 1 3.7057 -0.7818 -0.4201 48 1 5.1662 0.2149 -0.6245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601231563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:17 Heat of formation + Delta-G solvation = -23.268787 kcal Electronic energy + Delta-G solvation = -28345.081951 eV Core-core repulsion = 24400.763780 eV Total energy + Delta-G solvation = -3944.318171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36196 -39.75967 -38.35238 -37.77049 -35.19312 -33.91065 -33.03752 -31.36059 -30.53633 -29.72978 -28.23366 -28.06222 -26.77048 -24.54700 -23.67479 -22.60398 -22.22220 -21.08129 -20.79732 -19.21113 -18.55346 -17.78859 -16.83223 -16.69618 -16.59506 -16.43163 -15.71808 -15.43552 -14.84990 -14.60650 -14.30809 -14.10786 -13.84563 -13.55544 -13.44981 -13.28488 -13.15632 -13.02710 -12.94810 -12.52456 -12.38353 -12.36969 -12.10728 -11.95014 -11.83763 -11.33107 -10.97297 -10.73874 -10.53926 -10.35406 -10.23838 -10.21701 -9.95751 -9.84284 -9.65045 -9.54474 -9.41620 -9.04463 -8.86335 -8.48326 -6.58528 -5.79363 -3.27938 0.26122 0.83953 2.57029 2.64541 3.12954 3.36719 3.43668 3.45827 3.47274 3.94789 4.10610 4.36878 4.39604 4.48799 4.58227 4.64021 4.78244 4.86289 5.01224 5.09384 5.20642 5.24632 5.36291 5.40910 5.42430 5.57723 5.59428 5.82278 5.83930 5.88179 5.90500 6.02601 6.09400 6.21667 6.31988 6.38793 6.44488 6.60005 6.67645 6.70181 6.75538 6.81756 6.98675 7.33728 7.39001 7.45665 7.64875 7.80003 8.05118 8.48976 9.22717 9.84013 10.43719 11.29083 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.002045 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.975013 B =13690.810731 C =14133.047690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.065 3.935 4 C 0.040 3.960 5 N -0.456 5.456 6 C 0.103 3.897 7 C -0.153 4.153 8 C 0.560 3.440 9 O -0.529 6.529 10 N -0.716 5.716 11 C 0.124 3.876 12 C -0.091 4.091 13 C -0.128 4.128 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.062 0.938 18 C 0.006 3.994 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.175 3.825 25 C -0.133 4.133 26 C -0.012 4.012 27 C -0.114 4.114 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.400 0.600 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 -17.523 2.891 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.017 3.983 4 C -0.117 4.117 5 N -0.165 5.165 6 C -0.057 4.057 7 C -0.159 4.159 8 C 0.346 3.654 9 O -0.407 6.407 10 N -0.367 5.367 11 C 0.001 3.999 12 C -0.110 4.110 13 C -0.167 4.167 14 C 0.019 3.981 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.080 0.920 18 C -0.193 4.193 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.049 3.951 25 C -0.173 4.173 26 C -0.021 4.021 27 C -0.170 4.170 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.236 0.764 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.101 0.899 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.368 -17.576 3.028 27.073 hybrid contribution 0.520 0.274 -0.537 0.796 sum -19.849 -17.303 2.491 26.449 Atomic orbital electron populations 1.23159 0.77851 1.04587 1.01640 1.86099 1.21613 1.25485 1.88583 1.19770 0.92338 0.86090 1.00086 1.23092 1.00751 0.87074 1.00822 1.67544 1.11871 1.25940 1.11102 1.22885 0.88749 0.98176 0.95864 1.20773 0.94941 0.93795 1.06346 1.17897 0.86611 0.83698 0.77151 1.90740 1.63078 1.37302 1.49551 1.46030 1.09012 1.07807 1.73881 1.21652 0.78077 0.98038 1.02154 1.21323 0.98530 0.92485 0.98623 1.22087 0.98482 0.99787 0.96354 1.20902 0.86916 0.91755 0.98571 1.43979 1.02148 1.62700 1.22607 1.19124 1.08752 1.22145 0.88454 0.92048 1.25205 1.00871 0.97242 0.95981 1.69988 1.31339 1.40709 1.12615 0.86307 0.81082 0.78917 0.80494 1.21339 1.21564 1.20432 1.20701 0.99911 0.86644 0.87859 1.22185 0.92932 1.01887 1.00267 1.19856 0.90792 0.95960 0.95473 1.20931 0.99567 0.92473 1.04034 0.87702 0.92296 0.92284 0.82076 0.82002 0.76398 0.91445 0.91288 0.91191 0.92135 0.93535 0.96583 0.92865 0.93609 0.96337 0.89947 0.93053 0.92374 0.90182 0.91446 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.56 9.57 -19.48 -0.19 -2.74 16 3 C 0.06 0.63 6.68 -39.13 -0.26 0.37 16 4 C 0.04 0.36 10.21 -17.30 -0.18 0.18 16 5 N -0.46 -4.86 10.34 -12.80 -0.13 -4.99 16 6 C 0.10 1.05 10.70 -17.14 -0.18 0.87 16 7 C -0.15 -1.74 5.89 -104.84 -0.62 -2.36 16 8 C 0.56 7.21 7.74 -12.32 -0.10 7.11 16 9 O -0.53 -8.17 13.48 5.32 0.07 -8.10 16 10 N -0.72 -8.37 5.22 -61.25 -0.32 -8.69 16 11 C 0.12 1.65 5.06 -4.04 -0.02 1.63 16 12 C -0.09 -1.37 2.19 -90.58 -0.20 -1.56 16 13 C -0.13 -2.03 5.25 -26.61 -0.14 -2.17 16 14 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 15 N -0.59 -14.45 2.97 -172.32 -0.51 -14.96 16 16 C -0.25 -6.91 9.55 -15.06 -0.14 -7.06 16 17 H 0.06 1.65 7.86 -52.49 -0.41 1.23 16 18 C 0.01 0.17 5.00 -17.43 -0.09 0.08 16 19 N -0.90 -25.96 11.30 55.49 0.63 -25.33 16 20 Si 0.90 21.54 29.57 -169.99 -5.03 16.51 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 C 0.17 4.02 5.24 -3.71 -0.02 4.00 16 25 C -0.13 -2.38 5.36 -26.61 -0.14 -2.52 16 26 C -0.01 -0.13 5.97 -103.76 -0.62 -0.75 16 27 C -0.11 -1.23 8.70 36.01 0.31 -0.92 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.18 7.68 -51.93 -0.40 -0.22 16 30 H 0.06 0.18 7.67 -51.93 -0.40 -0.21 16 31 H 0.16 0.96 6.30 -52.49 -0.33 0.63 16 32 H 0.16 1.28 6.44 -52.49 -0.34 0.94 16 33 H 0.40 3.86 5.73 -40.82 -0.23 3.63 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.61 7.15 -51.93 -0.37 0.23 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 2.15 6.33 -51.93 -0.33 1.82 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.65 7.44 -51.93 -0.39 0.26 16 48 H 0.10 1.23 5.94 -51.93 -0.31 0.92 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -32.21 379.84 -8.46 -40.66 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.28 Total: 1.04 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.42 Total: 0.87 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.34 Total: -53.96 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.11 Total: -10.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.21 -8.46 -40.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601231563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.396 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds