Wall clock time and date at job start Tue Mar 31 2020 17:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35919 * 117.00039 * 2 1 4 4 C 1.38852 * 120.40516 * 359.97438 * 3 2 1 5 5 N 1.31881 * 121.00125 * 179.72002 * 4 3 2 6 6 C 1.31681 * 121.93919 * 0.28236 * 5 4 3 7 7 C 1.39528 * 120.69420 * 359.97389 * 6 5 4 8 8 C 1.47858 * 120.53294 * 180.02562 * 7 6 5 9 9 O 1.21547 * 119.99929 * 175.39441 * 8 7 6 10 10 N 1.34785 * 119.99626 * 355.39863 * 8 7 6 11 11 C 1.46502 * 119.99344 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46522 * 179.97438 * 11 10 8 13 13 C 1.53041 * 109.46336 * 295.02272 * 12 11 10 14 14 C 1.53185 * 109.31769 * 178.60203 * 13 12 11 15 15 N 1.46929 * 108.76194 * 54.65726 * 14 13 12 16 16 C 1.36945 * 120.62856 * 126.40802 * 15 14 13 17 17 H 1.08000 * 119.99999 * 326.55280 * 16 15 14 18 18 C 1.38813 * 119.99782 * 146.55623 * 16 15 14 19 19 N 1.31619 * 120.00096 * 347.91250 * 18 16 15 20 20 Si 1.86801 * 119.99795 * 167.90856 * 18 16 15 21 21 H 1.48510 * 109.46645 * 90.00176 * 20 18 16 22 22 H 1.48504 * 109.47091 * 209.99724 * 20 18 16 23 23 H 1.48497 * 109.47291 * 330.00288 * 20 18 16 24 24 C 1.46926 * 118.74076 * 306.38072 * 15 14 13 25 25 C 1.53041 * 109.46060 * 174.97244 * 12 11 10 26 26 C 1.38844 * 120.40884 * 180.25226 * 3 2 1 27 27 C 1.50702 * 120.88009 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47223 * 300.00051 * 1 2 3 30 30 H 1.08999 * 109.47448 * 60.00669 * 1 2 3 31 31 H 1.07998 * 119.49806 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.65382 * 179.97438 * 6 5 4 33 33 H 0.96997 * 119.99799 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47259 * 299.99131 * 11 10 8 35 35 H 1.08992 * 109.47243 * 59.99648 * 11 10 8 36 36 H 1.08997 * 109.46375 * 54.99698 * 12 11 10 37 37 H 1.09002 * 109.49807 * 298.57228 * 13 12 11 38 38 H 1.09003 * 109.49446 * 58.66324 * 13 12 11 39 39 H 1.08998 * 109.60251 * 294.87276 * 14 13 12 40 40 H 1.09005 * 109.70701 * 174.50689 * 14 13 12 41 41 H 0.96999 * 119.99860 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.59078 * 293.82540 * 24 15 14 43 43 H 1.08998 * 109.70460 * 173.46562 * 24 15 14 44 44 H 1.09004 * 109.49451 * 301.33758 * 25 12 11 45 45 H 1.08997 * 109.49887 * 61.39333 * 25 12 11 46 46 H 1.08994 * 109.47967 * 263.53969 * 27 26 3 47 47 H 1.08998 * 109.46945 * 23.54403 * 27 26 3 48 48 H 1.09005 * 109.46891 * 143.53808 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8845 3.5621 0.0050 6 6 3.1952 3.6891 0.0057 7 6 4.0198 2.5636 0.0011 8 6 5.4911 2.7104 0.0025 9 8 6.1999 1.7263 0.0830 10 7 6.0462 3.9355 -0.0854 11 6 7.5040 4.0808 -0.0846 12 6 7.8687 5.5626 -0.1941 13 6 7.4081 6.1023 -1.5501 14 6 7.7436 7.5941 -1.6422 15 7 9.1776 7.7733 -1.3773 16 6 9.9717 8.4504 -2.2640 17 1 9.7682 8.3941 -3.3232 18 6 11.0381 9.2092 -1.8015 19 7 11.1488 9.4747 -0.5171 20 14 12.3161 9.8534 -3.0020 21 1 11.9010 11.1909 -3.4962 22 1 13.6283 9.9648 -2.3156 23 1 12.4349 8.9170 -4.1483 24 6 9.7434 7.2127 -0.1426 25 6 9.3851 5.7252 -0.0673 26 6 3.4320 1.2936 -0.0053 27 6 4.2810 0.0485 -0.0105 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 0.2197 2.3225 -0.0014 32 1 3.6365 4.6748 0.0099 33 1 5.4804 4.7207 -0.1500 34 1 7.9091 3.6741 0.8420 35 1 7.9235 3.5400 -0.9328 36 1 7.3760 6.1179 0.6040 37 1 7.9193 5.5643 -2.3485 38 1 6.3314 5.9649 -1.6496 39 1 7.1636 8.1457 -0.9023 40 1 7.5075 7.9630 -2.6404 41 1 11.8938 10.0052 -0.1940 42 1 9.3265 7.7331 0.7196 43 1 10.8273 7.3276 -0.1498 44 1 9.7158 5.3193 0.8888 45 1 9.8776 5.1902 -0.8793 46 1 4.5853 -0.1883 1.0090 47 1 3.7057 -0.7818 -0.4201 48 1 5.1662 0.2149 -0.6245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601231563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:16 Heat of formation + Delta-G solvation = -44.110203 kcal Electronic energy + Delta-G solvation = -28345.985703 eV Core-core repulsion = 24400.763780 eV Total energy + Delta-G solvation = -3945.221923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12042 -40.67928 -39.39496 -38.87449 -36.52980 -34.78914 -34.53991 -32.75833 -31.75426 -31.28658 -29.11797 -28.51149 -28.15519 -25.96871 -24.77218 -23.77807 -23.43204 -22.51795 -21.76984 -20.69990 -19.40303 -18.63851 -18.49366 -17.53215 -17.36966 -17.02839 -16.83598 -16.69222 -16.37411 -15.70280 -15.31759 -15.27474 -15.15551 -14.93062 -14.80713 -14.47405 -14.10297 -13.91977 -13.86727 -13.79772 -13.75305 -13.37796 -13.13686 -12.95292 -12.78022 -12.71933 -12.57639 -12.36444 -12.27540 -12.00421 -11.83138 -11.59683 -11.28269 -11.10451 -11.06825 -10.68184 -10.54868 -10.43293 -10.05589 -9.53155 -8.56661 -7.85978 -5.37354 -0.51904 0.09148 1.46286 1.47626 1.56996 1.73843 1.88156 2.32776 2.51417 2.68130 3.27459 3.29560 3.41768 3.62034 3.65106 3.74532 3.84516 3.95867 4.02794 4.09440 4.13078 4.36383 4.40925 4.54428 4.54815 4.57389 4.63920 4.71852 4.72637 4.76737 4.78127 4.83715 4.96751 5.04918 5.04933 5.12806 5.17396 5.30752 5.31974 5.35829 5.43266 5.48056 5.56756 5.67955 5.81249 6.13828 6.43878 6.45000 6.72483 7.10488 7.18943 7.89416 8.42380 9.19614 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.002045 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.975013 B =13690.810731 C =14133.047690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.067 3.933 4 C 0.045 3.955 5 N -0.470 5.470 6 C 0.103 3.897 7 C -0.164 4.164 8 C 0.562 3.438 9 O -0.559 6.559 10 N -0.706 5.706 11 C 0.137 3.863 12 C -0.079 4.079 13 C -0.115 4.115 14 C 0.139 3.861 15 N -0.612 5.612 16 C -0.264 4.264 17 H 0.061 0.939 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.271 1.271 24 C 0.180 3.820 25 C -0.122 4.122 26 C -0.032 4.032 27 C -0.106 4.106 28 H 0.123 0.877 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.193 0.807 32 H 0.183 0.817 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.018 0.982 40 H 0.050 0.950 41 H 0.250 0.750 42 H -0.001 1.001 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.081 -18.465 2.505 29.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.019 3.981 4 C -0.112 4.112 5 N -0.180 5.180 6 C -0.056 4.056 7 C -0.169 4.169 8 C 0.349 3.651 9 O -0.440 6.440 10 N -0.358 5.358 11 C 0.014 3.986 12 C -0.098 4.098 13 C -0.154 4.154 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.394 4.394 17 H 0.079 0.921 18 C -0.244 4.244 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.196 1.196 24 C 0.055 3.945 25 C -0.162 4.162 26 C -0.041 4.041 27 C -0.162 4.162 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.209 0.791 32 H 0.200 0.800 33 H 0.250 0.750 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.895 -18.520 2.629 29.565 hybrid contribution 1.148 0.522 -0.414 1.328 sum -21.747 -17.998 2.215 28.315 Atomic orbital electron populations 1.23507 0.75583 1.06333 1.02865 1.86093 1.23951 1.24879 1.88271 1.19775 0.91876 0.86956 0.99513 1.23575 1.02139 0.86339 0.99160 1.67623 1.11972 1.26681 1.11696 1.23162 0.88685 0.98607 0.95182 1.20655 0.93950 0.94451 1.07831 1.18117 0.87215 0.83369 0.76391 1.90734 1.63905 1.38312 1.51008 1.45858 1.08342 1.08131 1.73516 1.21343 0.79120 0.96199 1.01955 1.21155 0.96269 0.93854 0.98488 1.21940 1.00750 0.96299 0.96425 1.21081 0.84465 0.94690 0.98353 1.44265 1.03972 1.62885 1.22434 1.19435 1.09245 1.21731 0.89036 0.92147 1.25933 1.02892 0.98053 0.97480 1.70139 1.31821 1.41757 1.14221 0.85317 0.78417 0.78331 0.78608 1.21041 1.21899 1.19612 1.20507 0.97485 0.89704 0.86837 1.21979 0.95287 0.97818 1.01082 1.20022 0.91841 0.95925 0.96358 1.20801 0.99002 0.93033 1.03397 0.85888 0.91008 0.91014 0.79079 0.80025 0.74984 0.91339 0.92040 0.90300 0.93071 0.89758 0.96408 0.93180 0.94126 0.98268 0.93716 0.91158 0.93067 0.90673 0.90547 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.69 9.57 -92.64 -0.89 -5.57 16 3 C 0.07 1.17 6.68 22.56 0.15 1.32 16 4 C 0.04 0.69 10.21 84.83 0.87 1.56 16 5 N -0.47 -8.83 10.34 -194.39 -2.01 -10.84 16 6 C 0.10 1.86 10.70 85.03 0.91 2.77 16 7 C -0.16 -3.49 5.89 -20.01 -0.12 -3.61 16 8 C 0.56 13.75 7.74 86.79 0.67 14.42 16 9 O -0.56 -17.07 13.48 -3.86 -0.05 -17.12 16 10 N -0.71 -14.93 5.22 -465.96 -2.43 -17.36 16 11 C 0.14 3.40 5.06 86.38 0.44 3.84 16 12 C -0.08 -2.22 2.19 -10.77 -0.02 -2.24 16 13 C -0.12 -3.42 5.25 30.67 0.16 -3.25 16 14 C 0.14 5.46 6.52 86.36 0.56 6.03 16 15 N -0.61 -30.18 2.97 -699.09 -2.08 -32.26 16 16 C -0.26 -14.50 9.55 84.03 0.80 -13.70 16 17 H 0.06 3.26 7.86 -2.91 -0.02 3.24 16 18 C -0.05 -2.68 5.00 84.86 0.42 -2.25 16 19 N -0.93 -55.24 11.30 21.65 0.24 -54.99 16 20 Si 0.97 44.97 29.57 68.60 2.03 47.00 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 C 0.18 8.48 5.24 86.36 0.45 8.94 16 25 C -0.12 -4.30 5.36 30.67 0.16 -4.14 16 26 C -0.03 -0.70 5.97 -19.30 -0.12 -0.81 16 27 C -0.11 -2.28 8.70 71.24 0.62 -1.66 16 28 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.21 7.68 -2.39 -0.02 0.19 16 30 H 0.07 0.22 7.67 -2.39 -0.02 0.20 16 31 H 0.19 1.59 6.30 -2.91 -0.02 1.57 16 32 H 0.18 2.34 6.44 -2.91 -0.02 2.32 16 33 H 0.41 6.66 5.73 -92.71 -0.53 6.13 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.89 7.15 -2.39 -0.02 1.88 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 1.96 7.93 -2.38 -0.02 1.94 16 41 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.04 2.42 6.33 -2.39 -0.02 2.40 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.08 1.43 7.44 -2.39 -0.02 1.41 16 48 H 0.08 2.06 5.94 -2.38 -0.01 2.04 16 Total: -1.00 -71.35 379.84 2.34 -69.01 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.44 Total: 13.76 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 7.08 Total: 8.37 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -6.28 Total: -115.45 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.94 Total: -22.69 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.35 2.34 -69.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601231563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.904 kcal (2) G-P(sol) polarization free energy of solvation -71.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds