Wall clock time and date at job start Tue Mar 31 2020 17:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35924 * 116.99863 * 2 1 4 4 C 1.38849 * 120.40851 * 359.97438 * 3 2 1 5 5 N 1.31872 * 121.00118 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.94344 * 0.03133 * 5 4 3 7 7 C 1.39526 * 120.68993 * 359.97438 * 6 5 4 8 8 C 1.47852 * 120.53283 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00165 * 174.30204 * 8 7 6 10 10 N 1.34781 * 120.00141 * 354.29481 * 8 7 6 11 11 C 1.46495 * 120.00375 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47304 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.52672 * 54.91852 * 12 11 10 14 14 C 1.53035 * 109.49745 * 175.00070 * 12 11 10 15 15 C 1.53039 * 109.52904 * 181.30821 * 14 12 11 16 16 C 1.53192 * 109.31293 * 298.64394 * 15 14 12 17 17 N 1.46931 * 108.77523 * 54.63258 * 16 15 14 18 18 C 1.36934 * 120.62866 * 126.41512 * 17 16 15 19 19 H 1.08000 * 120.00288 * 333.85646 * 18 17 16 20 20 C 1.38818 * 119.99879 * 153.86259 * 18 17 16 21 21 N 1.31621 * 119.99983 * 157.44664 * 20 18 17 22 22 Si 1.86793 * 119.99868 * 337.44281 * 20 18 17 23 23 H 1.48503 * 109.47123 * 90.06574 * 22 20 18 24 24 H 1.48505 * 109.47340 * 210.06221 * 22 20 18 25 25 H 1.48505 * 109.47338 * 330.06559 * 22 20 18 26 26 C 1.46920 * 118.73829 * 306.38918 * 17 16 15 27 27 C 1.38847 * 120.40398 * 180.32637 * 3 2 1 28 28 C 1.50707 * 120.87880 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47191 * 300.00473 * 1 2 3 31 31 H 1.09004 * 109.46776 * 60.00019 * 1 2 3 32 32 H 1.07997 * 119.49823 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.65818 * 179.97438 * 6 5 4 34 34 H 0.97003 * 119.99662 * 0.02562 * 10 8 7 35 35 H 1.09006 * 109.46701 * 60.00293 * 11 10 8 36 36 H 1.08999 * 109.47118 * 300.00451 * 11 10 8 37 37 H 1.09004 * 109.46173 * 61.29942 * 14 12 11 38 38 H 1.09001 * 109.46643 * 301.32314 * 14 12 11 39 39 H 1.09003 * 109.49701 * 58.59054 * 15 14 12 40 40 H 1.08999 * 109.49972 * 178.69136 * 15 14 12 41 41 H 1.09001 * 109.58848 * 174.41754 * 16 15 14 42 42 H 1.09004 * 109.58851 * 294.69878 * 16 15 14 43 43 H 0.96997 * 119.99491 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.58581 * 173.39708 * 26 17 16 45 45 H 1.08999 * 109.58925 * 293.68429 * 26 17 16 46 46 H 1.08995 * 109.46822 * 262.90018 * 28 27 3 47 47 H 1.08999 * 109.46895 * 22.90079 * 28 27 3 48 48 H 1.08999 * 109.46618 * 142.89906 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5621 0.0000 6 6 3.1953 3.6891 0.0004 7 6 4.0199 2.5636 0.0008 8 6 5.4911 2.7103 0.0019 9 8 6.1997 1.7283 0.1068 10 7 6.0465 3.9329 -0.1137 11 6 7.5042 4.0784 -0.1121 12 6 7.8694 5.5573 -0.2546 13 1 7.3738 6.1320 0.5279 14 6 9.3854 5.7236 -0.1281 15 6 9.7483 7.2063 -0.2379 16 6 9.3166 7.7333 -1.6100 17 7 7.8881 7.4461 -1.7989 18 6 7.0132 8.4462 -2.1296 19 1 7.2316 9.4675 -1.8547 20 6 5.8454 8.1472 -2.8180 21 7 4.8173 8.9668 -2.7569 22 14 5.7332 6.5820 -3.8311 23 1 5.2189 5.4781 -2.9813 24 1 4.8103 6.7974 -4.9745 25 1 7.0809 6.2259 -4.3431 26 6 7.4164 6.0653 -1.6267 27 6 3.4321 1.2936 -0.0068 28 6 4.2810 0.0484 -0.0138 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.2197 2.3226 -0.0005 33 1 3.6366 4.6749 0.0004 34 1 5.4810 4.7166 -0.1971 35 1 7.9262 3.5176 -0.9462 36 1 7.9068 3.6938 0.8250 37 1 9.8794 5.1689 -0.9258 38 1 9.7135 5.3401 0.8380 39 1 9.2350 7.7654 0.5444 40 1 10.8257 7.3265 -0.1245 41 1 9.4822 8.8096 -1.6567 42 1 9.8969 7.2402 -2.3900 43 1 4.0012 8.7577 -3.2376 44 1 6.3282 6.0411 -1.6844 45 1 7.8379 5.4348 -2.4096 46 1 4.5957 -0.1824 1.0039 47 1 3.7014 -0.7842 -0.4125 48 1 5.1597 0.2113 -0.6378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602893984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:52 Heat of formation + Delta-G solvation = -16.041848 kcal Electronic energy + Delta-G solvation = -29325.599065 eV Core-core repulsion = 25381.594277 eV Total energy + Delta-G solvation = -3944.004788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19469 -39.64992 -38.33167 -37.89746 -35.08848 -33.74880 -33.17775 -31.67484 -30.76832 -30.25558 -28.05720 -27.88909 -25.89722 -25.32164 -23.90910 -22.62323 -22.33438 -20.95302 -20.70111 -19.43519 -18.42908 -17.62210 -16.92544 -16.55896 -16.46874 -16.28481 -15.70209 -15.59285 -15.14592 -14.46037 -14.35492 -14.07839 -13.90874 -13.72869 -13.33872 -13.29532 -13.10831 -12.90363 -12.86376 -12.82453 -12.46822 -12.35804 -12.11559 -11.97958 -11.77089 -11.65171 -11.48250 -10.79337 -10.62912 -10.56250 -10.18024 -10.17280 -9.93921 -9.73955 -9.68053 -9.49191 -9.40157 -8.95003 -8.69177 -8.63265 -7.03447 -5.99666 -3.33157 0.43666 1.02199 2.70897 2.79349 3.23463 3.27369 3.46389 3.48471 3.64712 4.14323 4.27588 4.47567 4.55282 4.56074 4.72872 4.77187 4.77745 4.96637 5.02221 5.13275 5.14432 5.21360 5.27979 5.40363 5.42171 5.56872 5.58494 5.68654 5.75497 5.81235 5.95856 6.00101 6.05121 6.08337 6.09368 6.26058 6.30473 6.32502 6.47918 6.52880 6.56261 6.66151 6.68342 6.85429 6.94030 7.49561 7.66678 7.90865 8.16473 8.28604 8.90090 9.67872 10.05835 11.16067 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.003545 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.368661 B = 7895.549268 C = 9283.188145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.061 3.939 4 C 0.042 3.958 5 N -0.453 5.453 6 C 0.107 3.893 7 C -0.156 4.156 8 C 0.564 3.436 9 O -0.532 6.532 10 N -0.717 5.717 11 C 0.127 3.873 12 C -0.120 4.120 13 H 0.081 0.919 14 C -0.100 4.100 15 C -0.134 4.134 16 C 0.146 3.854 17 N -0.605 5.605 18 C -0.260 4.260 19 H 0.087 0.913 20 C 0.025 3.975 21 N -0.903 5.903 22 Si 0.876 3.124 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.274 1.274 26 C 0.132 3.868 27 C -0.012 4.012 28 C -0.110 4.110 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.405 0.595 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.022 0.978 43 H 0.263 0.737 44 H 0.072 0.928 45 H 0.025 0.975 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 -16.257 7.710 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C 0.014 3.986 4 C -0.115 4.115 5 N -0.161 5.161 6 C -0.052 4.052 7 C -0.161 4.161 8 C 0.350 3.650 9 O -0.411 6.411 10 N -0.368 5.368 11 C 0.003 3.997 12 C -0.141 4.141 13 H 0.100 0.900 14 C -0.139 4.139 15 C -0.174 4.174 16 C 0.020 3.980 17 N -0.328 5.328 18 C -0.388 4.388 19 H 0.104 0.896 20 C -0.174 4.174 21 N -0.546 5.546 22 Si 0.706 3.294 23 H -0.215 1.215 24 H -0.231 1.231 25 H -0.199 1.199 26 C 0.006 3.994 27 C -0.021 4.021 28 C -0.166 4.166 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.241 0.759 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.636 -16.321 7.702 18.410 hybrid contribution -0.383 -0.966 -0.749 1.281 sum -4.019 -17.287 6.953 19.062 Atomic orbital electron populations 1.23146 0.77966 1.04436 1.01666 1.86083 1.21524 1.25514 1.88736 1.19747 0.92314 0.86049 1.00505 1.23120 1.00763 0.87082 1.00580 1.67572 1.11873 1.25834 1.10867 1.22980 0.88780 0.98382 0.95058 1.20753 0.94876 0.93838 1.06631 1.17870 0.86693 0.83506 0.76945 1.90719 1.63127 1.37338 1.49925 1.46036 1.08879 1.08503 1.73430 1.21508 0.78765 0.97424 1.02006 1.21984 0.97370 0.93246 1.01465 0.90024 1.21341 0.94375 0.97318 1.00830 1.21988 0.99501 0.95619 1.00245 1.20958 0.84915 0.98969 0.93167 1.44350 1.03237 1.04288 1.80951 1.18937 0.99553 0.89654 1.30693 0.89565 1.25234 0.96184 0.97039 0.98947 1.69850 1.02778 1.38353 1.43628 0.87112 0.77443 0.83796 0.81028 1.21544 1.23111 1.19875 1.21385 0.98911 0.86394 0.92667 1.19810 0.90787 0.95816 0.95733 1.20882 0.99366 0.92476 1.03909 0.87803 0.92321 0.92312 0.82067 0.81839 0.75864 0.91369 0.91295 0.92305 0.92703 0.91896 0.92563 0.91932 0.96032 0.92693 0.91048 0.95753 0.90233 0.91505 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.16 9.56 -19.50 -0.19 -3.34 16 3 C 0.06 0.75 6.68 -39.13 -0.26 0.49 16 4 C 0.04 0.50 10.21 -17.31 -0.18 0.32 16 5 N -0.45 -6.55 10.34 -12.80 -0.13 -6.68 16 6 C 0.11 1.56 10.70 -17.14 -0.18 1.37 16 7 C -0.16 -2.28 5.89 -104.84 -0.62 -2.90 16 8 C 0.56 8.80 7.73 -12.32 -0.10 8.70 16 9 O -0.53 -9.09 13.53 5.32 0.07 -9.02 16 10 N -0.72 -10.86 5.28 -61.25 -0.32 -11.18 16 11 C 0.13 1.86 5.07 -4.05 -0.02 1.84 16 12 C -0.12 -1.93 2.37 -90.52 -0.21 -2.15 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.10 -1.44 5.17 -26.69 -0.14 -1.58 16 15 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 16 C 0.15 2.75 6.52 -3.71 -0.02 2.73 16 17 N -0.61 -13.79 2.78 -172.33 -0.48 -14.27 16 18 C -0.26 -7.04 10.03 -15.06 -0.15 -7.19 16 19 H 0.09 2.49 8.05 -52.49 -0.42 2.07 16 20 C 0.03 0.70 5.20 -17.43 -0.09 0.61 16 21 N -0.90 -26.92 13.97 55.49 0.78 -26.14 16 22 Si 0.88 21.95 24.38 -169.99 -4.14 17.81 16 23 H -0.29 -6.76 6.47 56.52 0.37 -6.40 16 24 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 25 H -0.27 -6.89 6.91 56.52 0.39 -6.50 16 26 C 0.13 2.71 3.31 -3.73 -0.01 2.70 16 27 C -0.01 -0.17 5.97 -103.75 -0.62 -0.79 16 28 C -0.11 -1.39 8.66 36.01 0.31 -1.07 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 31 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 32 H 0.16 1.40 6.30 -52.49 -0.33 1.06 16 33 H 0.16 2.22 6.46 -52.49 -0.34 1.89 16 34 H 0.40 6.05 5.80 -40.82 -0.24 5.81 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 1.58 3.60 -51.93 -0.19 1.39 16 45 H 0.02 0.52 7.27 -51.93 -0.38 0.14 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 0.75 7.42 -51.93 -0.39 0.36 16 48 H 0.10 1.36 6.04 -51.93 -0.31 1.04 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -32.45 373.65 -7.46 -39.91 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.21 Total: 5.28 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.46 Total: 2.01 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.16 Total: -58.28 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.11 Total: -12.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.45 -7.46 -39.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602893984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.865 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds