Wall clock time and date at job start Tue Mar 31 2020 17:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35924 * 116.99863 * 2 1 4 4 C 1.38849 * 120.40851 * 359.97438 * 3 2 1 5 5 N 1.31872 * 121.00118 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.94344 * 0.03133 * 5 4 3 7 7 C 1.39526 * 120.68993 * 359.97438 * 6 5 4 8 8 C 1.47852 * 120.53283 * 180.02562 * 7 6 5 9 9 O 1.21552 * 120.00165 * 174.30204 * 8 7 6 10 10 N 1.34781 * 120.00141 * 354.29481 * 8 7 6 11 11 C 1.46495 * 120.00375 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47304 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.52672 * 54.91852 * 12 11 10 14 14 C 1.53035 * 109.49745 * 175.00070 * 12 11 10 15 15 C 1.53039 * 109.52904 * 181.30821 * 14 12 11 16 16 C 1.53192 * 109.31293 * 298.64394 * 15 14 12 17 17 N 1.46931 * 108.77523 * 54.63258 * 16 15 14 18 18 C 1.36934 * 120.62866 * 126.41512 * 17 16 15 19 19 H 1.08000 * 120.00288 * 333.85646 * 18 17 16 20 20 C 1.38818 * 119.99879 * 153.86259 * 18 17 16 21 21 N 1.31621 * 119.99983 * 157.44664 * 20 18 17 22 22 Si 1.86793 * 119.99868 * 337.44281 * 20 18 17 23 23 H 1.48503 * 109.47123 * 90.06574 * 22 20 18 24 24 H 1.48505 * 109.47340 * 210.06221 * 22 20 18 25 25 H 1.48505 * 109.47338 * 330.06559 * 22 20 18 26 26 C 1.46920 * 118.73829 * 306.38918 * 17 16 15 27 27 C 1.38847 * 120.40398 * 180.32637 * 3 2 1 28 28 C 1.50707 * 120.87880 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47191 * 300.00473 * 1 2 3 31 31 H 1.09004 * 109.46776 * 60.00019 * 1 2 3 32 32 H 1.07997 * 119.49823 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.65818 * 179.97438 * 6 5 4 34 34 H 0.97003 * 119.99662 * 0.02562 * 10 8 7 35 35 H 1.09006 * 109.46701 * 60.00293 * 11 10 8 36 36 H 1.08999 * 109.47118 * 300.00451 * 11 10 8 37 37 H 1.09004 * 109.46173 * 61.29942 * 14 12 11 38 38 H 1.09001 * 109.46643 * 301.32314 * 14 12 11 39 39 H 1.09003 * 109.49701 * 58.59054 * 15 14 12 40 40 H 1.08999 * 109.49972 * 178.69136 * 15 14 12 41 41 H 1.09001 * 109.58848 * 174.41754 * 16 15 14 42 42 H 1.09004 * 109.58851 * 294.69878 * 16 15 14 43 43 H 0.96997 * 119.99491 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.58581 * 173.39708 * 26 17 16 45 45 H 1.08999 * 109.58925 * 293.68429 * 26 17 16 46 46 H 1.08995 * 109.46822 * 262.90018 * 28 27 3 47 47 H 1.08999 * 109.46895 * 22.90079 * 28 27 3 48 48 H 1.08999 * 109.46618 * 142.89906 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5621 0.0000 6 6 3.1953 3.6891 0.0004 7 6 4.0199 2.5636 0.0008 8 6 5.4911 2.7103 0.0019 9 8 6.1997 1.7283 0.1068 10 7 6.0465 3.9329 -0.1137 11 6 7.5042 4.0784 -0.1121 12 6 7.8694 5.5573 -0.2546 13 1 7.3738 6.1320 0.5279 14 6 9.3854 5.7236 -0.1281 15 6 9.7483 7.2063 -0.2379 16 6 9.3166 7.7333 -1.6100 17 7 7.8881 7.4461 -1.7989 18 6 7.0132 8.4462 -2.1296 19 1 7.2316 9.4675 -1.8547 20 6 5.8454 8.1472 -2.8180 21 7 4.8173 8.9668 -2.7569 22 14 5.7332 6.5820 -3.8311 23 1 5.2189 5.4781 -2.9813 24 1 4.8103 6.7974 -4.9745 25 1 7.0809 6.2259 -4.3431 26 6 7.4164 6.0653 -1.6267 27 6 3.4321 1.2936 -0.0068 28 6 4.2810 0.0484 -0.0138 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.2197 2.3226 -0.0005 33 1 3.6366 4.6749 0.0004 34 1 5.4810 4.7166 -0.1971 35 1 7.9262 3.5176 -0.9462 36 1 7.9068 3.6938 0.8250 37 1 9.8794 5.1689 -0.9258 38 1 9.7135 5.3401 0.8380 39 1 9.2350 7.7654 0.5444 40 1 10.8257 7.3265 -0.1245 41 1 9.4822 8.8096 -1.6567 42 1 9.8969 7.2402 -2.3900 43 1 4.0012 8.7577 -3.2376 44 1 6.3282 6.0411 -1.6844 45 1 7.8379 5.4348 -2.4096 46 1 4.5957 -0.1824 1.0039 47 1 3.7014 -0.7842 -0.4125 48 1 5.1597 0.2113 -0.6378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602893984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:51 Heat of formation + Delta-G solvation = -38.422856 kcal Electronic energy + Delta-G solvation = -29326.569578 eV Core-core repulsion = 25381.594277 eV Total energy + Delta-G solvation = -3944.975301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.19057 -40.76090 -39.61376 -38.95458 -36.42859 -34.93297 -34.73395 -33.10869 -32.38801 -31.43921 -29.02308 -28.53038 -27.28175 -27.02154 -24.98532 -24.07308 -23.47242 -22.33673 -21.86234 -20.84690 -19.42603 -18.81823 -18.58826 -17.69986 -17.44716 -17.20106 -17.06050 -16.82848 -16.46021 -15.92337 -15.51327 -15.24634 -15.19759 -15.06466 -14.76810 -14.65655 -14.46151 -14.05605 -13.95299 -13.88029 -13.83121 -13.56944 -13.37362 -13.17545 -13.04912 -12.77517 -12.56415 -12.40811 -12.18515 -12.08374 -11.69575 -11.61940 -11.39180 -11.25796 -11.16710 -10.75816 -10.63119 -10.50017 -10.13476 -9.59501 -8.93502 -8.16994 -5.45173 -0.59208 0.01487 1.23682 1.38902 1.45617 1.64783 1.83297 2.26878 2.38034 2.59828 3.03004 3.18753 3.34205 3.35537 3.53656 3.57959 3.82200 3.93089 3.93877 3.99856 4.05071 4.32040 4.32858 4.37744 4.46346 4.48382 4.50398 4.57623 4.62668 4.70960 4.74357 4.74857 4.78913 4.88747 4.99561 4.99949 5.06343 5.11628 5.18774 5.25648 5.32244 5.33789 5.41395 5.61137 5.87281 6.07612 6.13309 6.30062 6.65995 6.92680 6.97430 7.63870 8.04352 9.02633 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013883 B = 0.003545 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.368661 B = 7895.549268 C = 9283.188145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.070 3.930 4 C 0.045 3.955 5 N -0.474 5.474 6 C 0.094 3.906 7 C -0.167 4.167 8 C 0.564 3.436 9 O -0.550 6.550 10 N -0.719 5.719 11 C 0.132 3.868 12 C -0.107 4.107 13 H 0.075 0.925 14 C -0.098 4.098 15 C -0.125 4.125 16 C 0.136 3.864 17 N -0.620 5.620 18 C -0.246 4.246 19 H 0.055 0.945 20 C -0.025 4.025 21 N -0.949 5.949 22 Si 0.932 3.068 23 H -0.268 1.268 24 H -0.316 1.316 25 H -0.273 1.273 26 C 0.129 3.871 27 C -0.029 4.029 28 C -0.102 4.102 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.195 0.805 33 H 0.163 0.837 34 H 0.405 0.595 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.052 0.948 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.051 0.949 45 H 0.023 0.977 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 -18.822 8.641 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.226 6.226 3 C 0.022 3.978 4 C -0.113 4.113 5 N -0.183 5.183 6 C -0.065 4.065 7 C -0.172 4.172 8 C 0.351 3.649 9 O -0.430 6.430 10 N -0.370 5.370 11 C 0.009 3.991 12 C -0.127 4.127 13 H 0.094 0.906 14 C -0.136 4.136 15 C -0.164 4.164 16 C 0.012 3.988 17 N -0.344 5.344 18 C -0.376 4.376 19 H 0.073 0.927 20 C -0.220 4.220 21 N -0.595 5.595 22 Si 0.762 3.238 23 H -0.194 1.194 24 H -0.245 1.245 25 H -0.199 1.199 26 C 0.004 3.996 27 C -0.038 4.038 28 C -0.158 4.158 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.212 0.788 33 H 0.180 0.820 34 H 0.241 0.759 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.271 -18.918 8.655 21.059 hybrid contribution -0.517 -0.169 -1.008 1.145 sum -3.788 -19.087 7.647 20.907 Atomic orbital electron populations 1.23530 0.75546 1.06471 1.02818 1.86090 1.23959 1.24398 1.88185 1.19734 0.91888 0.86930 0.99239 1.23628 1.02254 0.86270 0.99120 1.67587 1.11826 1.27245 1.11665 1.22988 0.89128 0.98435 0.95914 1.20691 0.94266 0.94422 1.07815 1.18015 0.87123 0.83262 0.76475 1.90705 1.63614 1.37760 1.50904 1.46099 1.09174 1.08469 1.73270 1.21488 0.78583 0.96178 1.02874 1.21806 0.98948 0.93854 0.98130 0.90612 1.21376 0.92587 0.96673 1.02958 1.21888 1.01359 0.96012 0.97096 1.21188 0.82794 0.98938 0.95880 1.44508 1.04455 1.04312 1.81148 1.18891 0.99876 0.89645 1.29176 0.92704 1.25709 0.96091 0.99880 1.00321 1.69962 1.03485 1.40706 1.45371 0.86182 0.76932 0.81456 0.79230 1.19399 1.24495 1.19866 1.21400 0.97783 0.85158 0.95276 1.20027 0.91888 0.95728 0.96150 1.20789 0.98744 0.92550 1.03689 0.85489 0.90957 0.91294 0.78816 0.81983 0.75909 0.91538 0.89442 0.91452 0.89528 0.92819 0.89262 0.92899 0.95055 0.92984 0.93087 0.95939 0.90089 0.90198 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.31 -5.68 9.56 -92.70 -0.89 -6.57 16 3 C 0.07 1.59 6.68 22.56 0.15 1.74 16 4 C 0.04 0.99 10.21 84.83 0.87 1.85 16 5 N -0.47 -13.36 10.34 -194.40 -2.01 -15.37 16 6 C 0.09 2.73 10.70 85.03 0.91 3.64 16 7 C -0.17 -4.82 5.89 -20.01 -0.12 -4.94 16 8 C 0.56 17.29 7.73 86.79 0.67 17.96 16 9 O -0.55 -18.34 13.53 -3.88 -0.05 -18.39 16 10 N -0.72 -21.18 5.28 -465.97 -2.46 -23.64 16 11 C 0.13 3.62 5.07 86.38 0.44 4.05 16 12 C -0.11 -3.23 2.37 -10.73 -0.03 -3.26 16 13 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.10 -2.46 5.17 30.62 0.16 -2.30 16 15 C -0.12 -3.46 6.08 30.67 0.19 -3.28 16 16 C 0.14 4.99 6.52 86.36 0.56 5.56 16 17 N -0.62 -28.11 2.78 -699.14 -1.94 -30.06 16 18 C -0.25 -13.64 10.03 84.04 0.84 -12.80 16 19 H 0.06 3.32 8.05 -2.91 -0.02 3.30 16 20 C -0.02 -1.41 5.20 84.86 0.44 -0.97 16 21 N -0.95 -58.52 13.97 21.65 0.30 -58.21 16 22 Si 0.93 46.28 24.38 68.60 1.67 47.95 16 23 H -0.27 -12.25 6.47 99.48 0.64 -11.60 16 24 H -0.32 -16.23 7.11 99.48 0.71 -15.52 16 25 H -0.27 -13.41 6.91 99.48 0.69 -12.72 16 26 C 0.13 5.15 3.31 86.36 0.29 5.44 16 27 C -0.03 -0.76 5.97 -19.30 -0.12 -0.88 16 28 C -0.10 -2.46 8.66 71.24 0.62 -1.84 16 29 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.47 7.67 -2.39 -0.02 0.45 16 31 H 0.07 0.50 7.67 -2.38 -0.02 0.48 16 32 H 0.20 2.78 6.30 -2.91 -0.02 2.76 16 33 H 0.16 4.53 6.46 -2.91 -0.02 4.51 16 34 H 0.40 12.02 5.80 -92.71 -0.54 11.49 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 42 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.05 2.24 3.60 -2.39 -0.01 2.23 16 45 H 0.02 0.92 7.27 -2.39 -0.02 0.90 16 46 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.08 1.67 7.42 -2.39 -0.02 1.65 16 48 H 0.08 2.22 6.04 -2.39 -0.01 2.21 16 Total: -1.00 -71.68 373.65 1.97 -69.71 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.36 Total: 23.40 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 6.98 Total: 11.17 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -6.11 Total: -127.27 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.94 Total: -24.96 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.67 Total: 47.95 kcal Total: -71.68 1.97 -69.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602893984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.292 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds